Strain Fitness in Rahnella sp. WP5 around EX31_RS05555

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05545 and EX31_RS05550 overlap by 1 nucleotidesEX31_RS05550 and EX31_RS05555 are separated by 19 nucleotidesEX31_RS05555 and EX31_RS05560 are separated by 211 nucleotidesEX31_RS05560 and EX31_RS05565 overlap by 32 nucleotidesEX31_RS05565 and EX31_RS05570 are separated by 81 nucleotides EX31_RS05545: EX31_RS05545 - ABC transporter ATP-binding protein, at 264,143 to 265,009 _RS05545 EX31_RS05550: EX31_RS05550 - ABC transporter ATP-binding protein, at 265,009 to 265,791 _RS05550 EX31_RS05555: EX31_RS05555 - MmgE/PrpD family protein, at 265,811 to 267,190 _RS05555 EX31_RS05560: EX31_RS05560 - ParD-like family protein, at 267,402 to 267,638 _RS05560 EX31_RS05565: EX31_RS05565 - type II toxin-antitoxin system RelE/ParE family toxin, at 267,607 to 267,936 _RS05565 EX31_RS05570: EX31_RS05570 - type II toxin-antitoxin system PrlF family antitoxin, at 268,018 to 268,362 _RS05570 Position (kb) 265 266 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 264.827 kb on + strand, within EX31_RS05545at 264.827 kb on + strand, within EX31_RS05545at 264.828 kb on - strand, within EX31_RS05545at 264.828 kb on - strand, within EX31_RS05545at 264.838 kb on + strand, within EX31_RS05545at 264.838 kb on + strand, within EX31_RS05545at 264.839 kb on - strand, within EX31_RS05545at 264.839 kb on - strand, within EX31_RS05545at 264.871 kb on + strand, within EX31_RS05545at 264.887 kb on + strand, within EX31_RS05545at 264.887 kb on + strand, within EX31_RS05545at 264.888 kb on - strand, within EX31_RS05545at 264.947 kb on - strandat 264.984 kb on + strandat 264.985 kb on - strandat 264.986 kb on + strandat 265.153 kb on + strand, within EX31_RS05550at 265.276 kb on - strand, within EX31_RS05550at 265.282 kb on + strand, within EX31_RS05550at 265.282 kb on + strand, within EX31_RS05550at 265.282 kb on + strand, within EX31_RS05550at 265.282 kb on + strand, within EX31_RS05550at 265.282 kb on + strand, within EX31_RS05550at 265.282 kb on + strand, within EX31_RS05550at 265.283 kb on - strand, within EX31_RS05550at 265.283 kb on - strand, within EX31_RS05550at 265.295 kb on + strand, within EX31_RS05550at 265.296 kb on - strand, within EX31_RS05550at 265.296 kb on - strand, within EX31_RS05550at 265.318 kb on + strand, within EX31_RS05550at 265.318 kb on + strand, within EX31_RS05550at 265.318 kb on + strand, within EX31_RS05550at 265.319 kb on - strand, within EX31_RS05550at 265.319 kb on - strand, within EX31_RS05550at 265.348 kb on + strand, within EX31_RS05550at 265.529 kb on + strand, within EX31_RS05550at 265.627 kb on + strand, within EX31_RS05550at 265.628 kb on - strand, within EX31_RS05550at 265.756 kb on + strandat 265.757 kb on - strandat 265.757 kb on - strandat 265.919 kb on + strandat 265.919 kb on + strandat 265.919 kb on + strandat 265.919 kb on + strandat 265.920 kb on - strandat 265.920 kb on - strandat 265.973 kb on + strand, within EX31_RS05555at 265.973 kb on + strand, within EX31_RS05555at 265.974 kb on - strand, within EX31_RS05555at 265.974 kb on - strand, within EX31_RS05555at 265.978 kb on + strand, within EX31_RS05555at 265.979 kb on - strand, within EX31_RS05555at 266.072 kb on + strand, within EX31_RS05555at 266.184 kb on - strand, within EX31_RS05555at 266.184 kb on - strand, within EX31_RS05555at 266.240 kb on + strand, within EX31_RS05555at 266.240 kb on + strand, within EX31_RS05555at 266.240 kb on + strand, within EX31_RS05555at 266.241 kb on - strand, within EX31_RS05555at 266.241 kb on - strand, within EX31_RS05555at 266.241 kb on - strand, within EX31_RS05555at 266.241 kb on - strand, within EX31_RS05555at 266.241 kb on - strand, within EX31_RS05555at 266.316 kb on + strand, within EX31_RS05555at 266.316 kb on + strand, within EX31_RS05555at 266.316 kb on + strand, within EX31_RS05555at 266.316 kb on + strand, within EX31_RS05555at 266.317 kb on - strand, within EX31_RS05555at 266.317 kb on - strand, within EX31_RS05555at 266.317 kb on - strand, within EX31_RS05555at 266.317 kb on - strand, within EX31_RS05555at 266.317 kb on - strand, within EX31_RS05555at 266.317 kb on - strand, within EX31_RS05555at 266.329 kb on + strand, within EX31_RS05555at 266.482 kb on + strand, within EX31_RS05555at 266.482 kb on + strand, within EX31_RS05555at 266.482 kb on + strand, within EX31_RS05555at 266.482 kb on + strand, within EX31_RS05555at 266.482 kb on + strand, within EX31_RS05555at 266.483 kb on - strand, within EX31_RS05555at 266.581 kb on - strand, within EX31_RS05555at 266.581 kb on - strand, within EX31_RS05555at 266.581 kb on - strand, within EX31_RS05555at 266.581 kb on - strand, within EX31_RS05555at 266.581 kb on - strand, within EX31_RS05555at 266.581 kb on - strand, within EX31_RS05555at 266.581 kb on - strand, within EX31_RS05555at 266.704 kb on + strand, within EX31_RS05555at 266.704 kb on + strand, within EX31_RS05555at 266.704 kb on + strand, within EX31_RS05555at 266.705 kb on - strand, within EX31_RS05555at 266.705 kb on - strand, within EX31_RS05555at 266.705 kb on - strand, within EX31_RS05555at 266.705 kb on - strand, within EX31_RS05555at 266.786 kb on + strand, within EX31_RS05555at 266.786 kb on + strand, within EX31_RS05555at 266.787 kb on - strand, within EX31_RS05555at 266.887 kb on - strand, within EX31_RS05555at 266.901 kb on - strand, within EX31_RS05555at 266.901 kb on - strand, within EX31_RS05555at 266.901 kb on - strand, within EX31_RS05555at 266.901 kb on - strand, within EX31_RS05555at 266.902 kb on + strand, within EX31_RS05555at 266.903 kb on - strand, within EX31_RS05555at 266.962 kb on + strand, within EX31_RS05555at 266.963 kb on - strand, within EX31_RS05555at 266.963 kb on - strand, within EX31_RS05555at 266.963 kb on - strand, within EX31_RS05555at 266.963 kb on - strand, within EX31_RS05555at 266.985 kb on + strand, within EX31_RS05555at 266.986 kb on - strand, within EX31_RS05555at 266.986 kb on - strand, within EX31_RS05555at 266.986 kb on - strand, within EX31_RS05555at 267.135 kb on + strandat 267.144 kb on + strandat 267.269 kb on + strandat 267.269 kb on + strandat 267.270 kb on - strandat 267.270 kb on - strandat 267.270 kb on - strandat 267.270 kb on - strandat 267.270 kb on - strandat 267.270 kb on - strandat 267.273 kb on + strandat 267.273 kb on + strandat 267.273 kb on + strandat 267.273 kb on + strandat 267.273 kb on + strandat 267.274 kb on - strandat 267.288 kb on - strandat 267.345 kb on + strandat 267.346 kb on - strandat 267.355 kb on + strandat 267.379 kb on + strandat 267.413 kb on + strandat 267.413 kb on + strandat 267.414 kb on - strandat 267.421 kb on + strandat 267.421 kb on + strandat 267.422 kb on - strandat 267.422 kb on - strandat 267.446 kb on - strand, within EX31_RS05560at 267.446 kb on - strand, within EX31_RS05560at 267.446 kb on - strand, within EX31_RS05560at 267.451 kb on + strand, within EX31_RS05560at 267.451 kb on + strand, within EX31_RS05560at 267.452 kb on - strand, within EX31_RS05560at 267.452 kb on - strand, within EX31_RS05560at 267.452 kb on - strand, within EX31_RS05560at 267.551 kb on + strand, within EX31_RS05560at 267.552 kb on - strand, within EX31_RS05560at 267.552 kb on - strand, within EX31_RS05560at 267.587 kb on + strand, within EX31_RS05560at 267.588 kb on - strand, within EX31_RS05560at 267.588 kb on - strand, within EX31_RS05560at 267.599 kb on - strand, within EX31_RS05560at 267.606 kb on + strand, within EX31_RS05560at 267.606 kb on + strand, within EX31_RS05560at 267.639 kb on + strandat 267.639 kb on + strandat 267.639 kb on + strandat 267.640 kb on - strand, within EX31_RS05565at 267.640 kb on - strand, within EX31_RS05565at 267.640 kb on - strand, within EX31_RS05565at 267.640 kb on - strand, within EX31_RS05565at 267.640 kb on - strand, within EX31_RS05565at 267.725 kb on + strand, within EX31_RS05565at 267.725 kb on + strand, within EX31_RS05565at 267.725 kb on + strand, within EX31_RS05565at 267.753 kb on + strand, within EX31_RS05565at 267.753 kb on + strand, within EX31_RS05565at 267.753 kb on + strand, within EX31_RS05565at 267.753 kb on + strand, within EX31_RS05565at 267.753 kb on + strand, within EX31_RS05565at 267.754 kb on - strand, within EX31_RS05565at 267.754 kb on - strand, within EX31_RS05565at 267.772 kb on + strand, within EX31_RS05565at 267.772 kb on + strand, within EX31_RS05565at 267.773 kb on - strand, within EX31_RS05565at 267.773 kb on - strand, within EX31_RS05565at 267.786 kb on + strand, within EX31_RS05565at 267.823 kb on + strand, within EX31_RS05565at 267.823 kb on + strand, within EX31_RS05565at 267.824 kb on - strand, within EX31_RS05565at 267.824 kb on - strand, within EX31_RS05565at 267.853 kb on + strand, within EX31_RS05565at 267.853 kb on + strand, within EX31_RS05565at 267.853 kb on + strand, within EX31_RS05565at 267.853 kb on + strand, within EX31_RS05565at 267.853 kb on + strand, within EX31_RS05565at 267.854 kb on - strand, within EX31_RS05565at 267.854 kb on - strand, within EX31_RS05565at 267.854 kb on - strand, within EX31_RS05565at 267.854 kb on - strand, within EX31_RS05565at 267.854 kb on - strand, within EX31_RS05565at 267.886 kb on + strand, within EX31_RS05565at 267.887 kb on - strand, within EX31_RS05565at 267.897 kb on + strand, within EX31_RS05565at 267.898 kb on - strand, within EX31_RS05565at 267.898 kb on - strand, within EX31_RS05565at 267.934 kb on + strandat 267.972 kb on + strandat 267.994 kb on + strandat 267.994 kb on + strandat 267.994 kb on + strandat 267.994 kb on + strandat 267.994 kb on + strandat 267.994 kb on + strandat 267.994 kb on + strandat 267.995 kb on - strandat 267.995 kb on - strandat 268.004 kb on + strandat 268.005 kb on - strandat 268.018 kb on - strandat 268.018 kb on - strandat 268.018 kb on - strandat 268.018 kb on - strandat 268.018 kb on - strandat 268.018 kb on - strandat 268.018 kb on - strandat 268.018 kb on - strandat 268.018 kb on - strandat 268.034 kb on + strandat 268.174 kb on - strand, within EX31_RS05570at 268.174 kb on - strand, within EX31_RS05570

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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264,827 + EX31_RS05545 0.79 -0.3
264,827 + EX31_RS05545 0.79 -1.4
264,828 - EX31_RS05545 0.79 -0.2
264,828 - EX31_RS05545 0.79 -0.2
264,838 + EX31_RS05545 0.80 +0.1
264,838 + EX31_RS05545 0.80 +0.3
264,839 - EX31_RS05545 0.80 +1.2
264,839 - EX31_RS05545 0.80 -0.6
264,871 + EX31_RS05545 0.84 -0.4
264,887 + EX31_RS05545 0.86 +0.4
264,887 + EX31_RS05545 0.86 +0.1
264,888 - EX31_RS05545 0.86 +0.0
264,947 - -0.6
264,984 + +0.4
264,985 - -0.3
264,986 + +1.0
265,153 + EX31_RS05550 0.18 +0.0
265,276 - EX31_RS05550 0.34 +0.9
265,282 + EX31_RS05550 0.35 +0.4
265,282 + EX31_RS05550 0.35 +0.6
265,282 + EX31_RS05550 0.35 -0.5
265,282 + EX31_RS05550 0.35 +0.0
265,282 + EX31_RS05550 0.35 +0.5
265,282 + EX31_RS05550 0.35 +0.5
265,283 - EX31_RS05550 0.35 +0.3
265,283 - EX31_RS05550 0.35 +0.7
265,295 + EX31_RS05550 0.37 +0.2
265,296 - EX31_RS05550 0.37 +0.4
265,296 - EX31_RS05550 0.37 +0.2
265,318 + EX31_RS05550 0.39 -0.4
265,318 + EX31_RS05550 0.39 +0.8
265,318 + EX31_RS05550 0.39 -0.1
265,319 - EX31_RS05550 0.40 -0.7
265,319 - EX31_RS05550 0.40 +0.0
265,348 + EX31_RS05550 0.43 -0.9
265,529 + EX31_RS05550 0.66 +0.2
265,627 + EX31_RS05550 0.79 +0.8
265,628 - EX31_RS05550 0.79 -0.1
265,756 + +0.3
265,757 - +0.1
265,757 - -0.1
265,919 + +0.4
265,919 + +0.4
265,919 + -0.0
265,919 + +0.5
265,920 - -0.2
265,920 - +0.0
265,973 + EX31_RS05555 0.12 -0.8
265,973 + EX31_RS05555 0.12 -0.9
265,974 - EX31_RS05555 0.12 -0.6
265,974 - EX31_RS05555 0.12 -0.0
265,978 + EX31_RS05555 0.12 -2.2
265,979 - EX31_RS05555 0.12 +0.4
266,072 + EX31_RS05555 0.19 +0.6
266,184 - EX31_RS05555 0.27 +0.1
266,184 - EX31_RS05555 0.27 +0.2
266,240 + EX31_RS05555 0.31 -0.6
266,240 + EX31_RS05555 0.31 +0.6
266,240 + EX31_RS05555 0.31 -0.2
266,241 - EX31_RS05555 0.31 +0.3
266,241 - EX31_RS05555 0.31 +0.1
266,241 - EX31_RS05555 0.31 +0.6
266,241 - EX31_RS05555 0.31 +0.6
266,241 - EX31_RS05555 0.31 +0.6
266,316 + EX31_RS05555 0.37 -0.1
266,316 + EX31_RS05555 0.37 -1.3
266,316 + EX31_RS05555 0.37 -0.5
266,316 + EX31_RS05555 0.37 -1.1
266,317 - EX31_RS05555 0.37 -0.1
266,317 - EX31_RS05555 0.37 -0.2
266,317 - EX31_RS05555 0.37 -0.1
266,317 - EX31_RS05555 0.37 +0.4
266,317 - EX31_RS05555 0.37 -0.8
266,317 - EX31_RS05555 0.37 +0.2
266,329 + EX31_RS05555 0.38 -0.0
266,482 + EX31_RS05555 0.49 -0.7
266,482 + EX31_RS05555 0.49 -0.2
266,482 + EX31_RS05555 0.49 -0.0
266,482 + EX31_RS05555 0.49 -0.5
266,482 + EX31_RS05555 0.49 -2.0
266,483 - EX31_RS05555 0.49 +1.7
266,581 - EX31_RS05555 0.56 +0.5
266,581 - EX31_RS05555 0.56 +0.4
266,581 - EX31_RS05555 0.56 +0.3
266,581 - EX31_RS05555 0.56 -0.8
266,581 - EX31_RS05555 0.56 +1.0
266,581 - EX31_RS05555 0.56 +0.2
266,581 - EX31_RS05555 0.56 -0.7
266,704 + EX31_RS05555 0.65 -0.7
266,704 + EX31_RS05555 0.65 +0.2
266,704 + EX31_RS05555 0.65 +0.3
266,705 - EX31_RS05555 0.65 -1.7
266,705 - EX31_RS05555 0.65 +0.0
266,705 - EX31_RS05555 0.65 -0.1
266,705 - EX31_RS05555 0.65 -1.5
266,786 + EX31_RS05555 0.71 +0.2
266,786 + EX31_RS05555 0.71 +0.0
266,787 - EX31_RS05555 0.71 -3.1
266,887 - EX31_RS05555 0.78 -0.5
266,901 - EX31_RS05555 0.79 +2.3
266,901 - EX31_RS05555 0.79 +0.8
266,901 - EX31_RS05555 0.79 -0.9
266,901 - EX31_RS05555 0.79 -2.1
266,902 + EX31_RS05555 0.79 +0.1
266,903 - EX31_RS05555 0.79 -0.8
266,962 + EX31_RS05555 0.83 -0.1
266,963 - EX31_RS05555 0.83 +0.2
266,963 - EX31_RS05555 0.83 +0.6
266,963 - EX31_RS05555 0.83 +0.7
266,963 - EX31_RS05555 0.83 -0.1
266,985 + EX31_RS05555 0.85 +0.5
266,986 - EX31_RS05555 0.85 -0.0
266,986 - EX31_RS05555 0.85 -1.4
266,986 - EX31_RS05555 0.85 -0.9
267,135 + -0.6
267,144 + +0.1
267,269 + -0.3
267,269 + -0.2
267,270 - -0.1
267,270 - -0.4
267,270 - -1.9
267,270 - -0.6
267,270 - +0.2
267,270 - +0.4
267,273 + +0.5
267,273 + -0.5
267,273 + -0.3
267,273 + +0.3
267,273 + +0.1
267,274 - +0.2
267,288 - -1.4
267,345 + -0.1
267,346 - -0.2
267,355 + -1.4
267,379 + +0.1
267,413 + -0.1
267,413 + -0.5
267,414 - +0.1
267,421 + -0.0
267,421 + +0.5
267,422 - +0.2
267,422 - -0.6
267,446 - EX31_RS05560 0.19 -1.2
267,446 - EX31_RS05560 0.19 -1.2
267,446 - EX31_RS05560 0.19 -0.2
267,451 + EX31_RS05560 0.21 +0.5
267,451 + EX31_RS05560 0.21 -0.6
267,452 - EX31_RS05560 0.21 -0.6
267,452 - EX31_RS05560 0.21 -1.2
267,452 - EX31_RS05560 0.21 -1.4
267,551 + EX31_RS05560 0.63 -0.1
267,552 - EX31_RS05560 0.63 +0.2
267,552 - EX31_RS05560 0.63 +0.1
267,587 + EX31_RS05560 0.78 +0.2
267,588 - EX31_RS05560 0.78 +0.4
267,588 - EX31_RS05560 0.78 -1.2
267,599 - EX31_RS05560 0.83 -1.2
267,606 + EX31_RS05560 0.86 -0.2
267,606 + EX31_RS05560 0.86 +1.0
267,639 + -0.5
267,639 + +0.6
267,639 + +0.5
267,640 - EX31_RS05565 0.10 -1.1
267,640 - EX31_RS05565 0.10 +0.8
267,640 - EX31_RS05565 0.10 +0.0
267,640 - EX31_RS05565 0.10 -0.5
267,640 - EX31_RS05565 0.10 +0.7
267,725 + EX31_RS05565 0.36 +0.0
267,725 + EX31_RS05565 0.36 +0.4
267,725 + EX31_RS05565 0.36 -0.1
267,753 + EX31_RS05565 0.44 -0.7
267,753 + EX31_RS05565 0.44 -0.0
267,753 + EX31_RS05565 0.44 -0.5
267,753 + EX31_RS05565 0.44 -0.6
267,753 + EX31_RS05565 0.44 -0.9
267,754 - EX31_RS05565 0.45 -0.1
267,754 - EX31_RS05565 0.45 -2.7
267,772 + EX31_RS05565 0.50 -0.1
267,772 + EX31_RS05565 0.50 +0.4
267,773 - EX31_RS05565 0.50 +0.0
267,773 - EX31_RS05565 0.50 -0.2
267,786 + EX31_RS05565 0.54 +0.2
267,823 + EX31_RS05565 0.65 -0.7
267,823 + EX31_RS05565 0.65 -0.4
267,824 - EX31_RS05565 0.66 +0.4
267,824 - EX31_RS05565 0.66 -1.1
267,853 + EX31_RS05565 0.75 +0.1
267,853 + EX31_RS05565 0.75 +1.6
267,853 + EX31_RS05565 0.75 +0.6
267,853 + EX31_RS05565 0.75 +1.2
267,853 + EX31_RS05565 0.75 -0.3
267,854 - EX31_RS05565 0.75 +0.2
267,854 - EX31_RS05565 0.75 +1.0
267,854 - EX31_RS05565 0.75 +0.8
267,854 - EX31_RS05565 0.75 +0.1
267,854 - EX31_RS05565 0.75 +1.2
267,886 + EX31_RS05565 0.85 -1.0
267,887 - EX31_RS05565 0.85 +0.0
267,897 + EX31_RS05565 0.88 +0.0
267,898 - EX31_RS05565 0.88 +0.3
267,898 - EX31_RS05565 0.88 -0.3
267,934 + +0.1
267,972 + +0.6
267,994 + -1.3
267,994 + +0.2
267,994 + +0.6
267,994 + +0.7
267,994 + -0.0
267,994 + +0.4
267,994 + +0.8
267,995 - -0.4
267,995 - -0.0
268,004 + -0.6
268,005 - +0.6
268,018 - +1.6
268,018 - +0.3
268,018 - +0.3
268,018 - +0.4
268,018 - -0.0
268,018 - -0.1
268,018 - -0.3
268,018 - +0.3
268,018 - -0.8
268,034 + -0.7
268,174 - EX31_RS05570 0.45 +0.3
268,174 - EX31_RS05570 0.45 -0.1

Or see this region's nucleotide sequence