Strain Fitness in Rahnella sp. WP5 around EX31_RS02410

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02405 and EX31_RS02410 are separated by 319 nucleotidesEX31_RS02410 and EX31_RS02415 are separated by 285 nucleotidesEX31_RS02415 and EX31_RS02420 overlap by 20 nucleotides EX31_RS02405: EX31_RS02405 - MFS transporter, at 511,273 to 512,484 _RS02405 EX31_RS02410: EX31_RS02410 - multidrug DMT transporter, at 512,804 to 513,139 _RS02410 EX31_RS02415: EX31_RS02415 - hypothetical protein, at 513,425 to 513,727 _RS02415 EX31_RS02420: EX31_RS02420 - type III PLP-dependent enzyme, at 513,708 to 515,015 _RS02420 Position (kb) 512 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 511.804 kb on - strand, within EX31_RS02405at 511.807 kb on + strand, within EX31_RS02405at 511.808 kb on - strand, within EX31_RS02405at 511.948 kb on - strand, within EX31_RS02405at 511.953 kb on + strand, within EX31_RS02405at 511.954 kb on - strand, within EX31_RS02405at 511.954 kb on - strand, within EX31_RS02405at 511.954 kb on - strand, within EX31_RS02405at 511.987 kb on - strand, within EX31_RS02405at 512.138 kb on - strand, within EX31_RS02405at 512.221 kb on + strand, within EX31_RS02405at 512.221 kb on + strand, within EX31_RS02405at 512.221 kb on + strand, within EX31_RS02405at 512.222 kb on - strand, within EX31_RS02405at 512.222 kb on - strand, within EX31_RS02405at 512.224 kb on + strand, within EX31_RS02405at 512.224 kb on + strand, within EX31_RS02405at 512.224 kb on + strand, within EX31_RS02405at 512.225 kb on - strand, within EX31_RS02405at 512.225 kb on - strand, within EX31_RS02405at 512.225 kb on - strand, within EX31_RS02405at 512.225 kb on - strand, within EX31_RS02405at 512.287 kb on + strand, within EX31_RS02405at 512.287 kb on + strand, within EX31_RS02405at 512.288 kb on - strand, within EX31_RS02405at 512.385 kb on + strandat 512.532 kb on - strandat 512.597 kb on - strandat 512.604 kb on - strandat 512.619 kb on - strandat 512.619 kb on - strandat 512.683 kb on + strandat 512.683 kb on + strandat 512.684 kb on - strandat 512.684 kb on - strandat 512.684 kb on - strandat 512.689 kb on + strandat 512.690 kb on - strandat 512.717 kb on + strandat 512.728 kb on + strandat 512.821 kb on + strandat 512.821 kb on + strandat 512.822 kb on - strandat 512.827 kb on - strandat 512.827 kb on - strandat 512.842 kb on + strand, within EX31_RS02410at 512.843 kb on - strand, within EX31_RS02410at 512.843 kb on - strand, within EX31_RS02410at 512.901 kb on + strand, within EX31_RS02410at 512.901 kb on + strand, within EX31_RS02410at 513.128 kb on + strandat 513.140 kb on - strandat 513.140 kb on - strandat 513.140 kb on - strandat 513.140 kb on - strandat 513.140 kb on - strandat 513.140 kb on - strandat 513.140 kb on - strandat 513.162 kb on + strandat 513.193 kb on + strandat 513.199 kb on - strandat 513.285 kb on - strandat 513.344 kb on - strandat 513.388 kb on - strandat 513.430 kb on + strandat 513.455 kb on - strandat 513.457 kb on - strand, within EX31_RS02415at 513.457 kb on - strand, within EX31_RS02415at 513.491 kb on - strand, within EX31_RS02415at 513.982 kb on + strand, within EX31_RS02420at 514.007 kb on + strand, within EX31_RS02420at 514.007 kb on + strand, within EX31_RS02420at 514.008 kb on - strand, within EX31_RS02420at 514.033 kb on - strand, within EX31_RS02420at 514.118 kb on + strand, within EX31_RS02420at 514.119 kb on - strand, within EX31_RS02420

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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511,804 - EX31_RS02405 0.44 -0.4
511,807 + EX31_RS02405 0.44 +0.4
511,808 - EX31_RS02405 0.44 +1.4
511,948 - EX31_RS02405 0.56 -0.4
511,953 + EX31_RS02405 0.56 +1.3
511,954 - EX31_RS02405 0.56 -3.3
511,954 - EX31_RS02405 0.56 -1.6
511,954 - EX31_RS02405 0.56 +0.1
511,987 - EX31_RS02405 0.59 -0.2
512,138 - EX31_RS02405 0.71 +0.7
512,221 + EX31_RS02405 0.78 -0.3
512,221 + EX31_RS02405 0.78 -0.3
512,221 + EX31_RS02405 0.78 -1.6
512,222 - EX31_RS02405 0.78 -1.7
512,222 - EX31_RS02405 0.78 +2.0
512,224 + EX31_RS02405 0.78 +1.3
512,224 + EX31_RS02405 0.78 +0.1
512,224 + EX31_RS02405 0.78 +1.0
512,225 - EX31_RS02405 0.79 +0.8
512,225 - EX31_RS02405 0.79 -0.2
512,225 - EX31_RS02405 0.79 -0.0
512,225 - EX31_RS02405 0.79 -0.9
512,287 + EX31_RS02405 0.84 -0.6
512,287 + EX31_RS02405 0.84 -1.0
512,288 - EX31_RS02405 0.84 -1.2
512,385 + -0.2
512,532 - -0.8
512,597 - -2.2
512,604 - +1.1
512,619 - -0.0
512,619 - +0.2
512,683 + -0.3
512,683 + -0.6
512,684 - -0.8
512,684 - -0.4
512,684 - -2.3
512,689 + -1.8
512,690 - -0.5
512,717 + +0.1
512,728 + -0.4
512,821 + -0.1
512,821 + -0.8
512,822 - +0.1
512,827 - +0.1
512,827 - +0.3
512,842 + EX31_RS02410 0.11 +0.0
512,843 - EX31_RS02410 0.12 -1.0
512,843 - EX31_RS02410 0.12 +0.8
512,901 + EX31_RS02410 0.29 -1.1
512,901 + EX31_RS02410 0.29 -2.0
513,128 + -0.0
513,140 - +0.6
513,140 - -0.8
513,140 - +1.9
513,140 - -0.1
513,140 - +0.1
513,140 - +0.3
513,140 - -0.3
513,162 + -0.7
513,193 + +0.3
513,199 - -0.2
513,285 - +0.5
513,344 - -0.4
513,388 - +0.1
513,430 + +0.6
513,455 - +1.2
513,457 - EX31_RS02415 0.11 +1.1
513,457 - EX31_RS02415 0.11 -1.1
513,491 - EX31_RS02415 0.22 -0.9
513,982 + EX31_RS02420 0.21 +0.1
514,007 + EX31_RS02420 0.23 -0.4
514,007 + EX31_RS02420 0.23 +0.6
514,008 - EX31_RS02420 0.23 -0.9
514,033 - EX31_RS02420 0.25 -0.8
514,118 + EX31_RS02420 0.31 +0.1
514,119 - EX31_RS02420 0.31 -0.8

Or see this region's nucleotide sequence