Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01420 and EX31_RS01425 are separated by 192 nucleotides EX31_RS01425 and EX31_RS01430 are separated by 64 nucleotides EX31_RS01430 and EX31_RS01435 are separated by 113 nucleotides
EX31_RS01420: EX31_RS01420 - virulence factor, at 318,137 to 320,512
_RS01420
EX31_RS01425: EX31_RS01425 - class I fructose-bisphosphate aldolase, at 320,705 to 321,754
_RS01425
EX31_RS01430: EX31_RS01430 - type 1 glutamine amidotransferase domain-containing protein, at 321,819 to 322,499
_RS01430
EX31_RS01435: EX31_RS01435 - TetR/AcrR family transcriptional regulator, at 322,613 to 323,224
_RS01435
Position (kb) 320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2 at 319.804 kb on + strand, within EX31_RS01420 at 319.804 kb on + strand, within EX31_RS01420 at 319.805 kb on - strand, within EX31_RS01420 at 319.805 kb on - strand, within EX31_RS01420 at 319.805 kb on - strand, within EX31_RS01420 at 319.882 kb on + strand, within EX31_RS01420 at 319.896 kb on + strand, within EX31_RS01420 at 320.132 kb on - strand, within EX31_RS01420 at 320.272 kb on + strand, within EX31_RS01420 at 320.273 kb on - strand, within EX31_RS01420 at 320.379 kb on - strand at 320.492 kb on - strand at 320.492 kb on - strand at 320.510 kb on + strand at 320.510 kb on + strand at 320.511 kb on - strand at 320.514 kb on - strand at 320.554 kb on + strand at 320.596 kb on - strand at 320.636 kb on - strand at 320.637 kb on + strand at 320.637 kb on + strand at 320.637 kb on + strand at 320.638 kb on - strand at 320.638 kb on - strand at 320.638 kb on - strand at 320.641 kb on + strand at 320.641 kb on + strand at 320.642 kb on - strand at 320.658 kb on - strand at 320.658 kb on - strand at 320.704 kb on + strand at 320.705 kb on - strand at 320.714 kb on - strand at 320.719 kb on + strand at 320.720 kb on - strand at 320.787 kb on + strand at 320.787 kb on + strand at 320.787 kb on + strand at 320.788 kb on - strand at 320.788 kb on - strand at 320.789 kb on + strand at 320.789 kb on + strand at 320.789 kb on + strand at 320.789 kb on + strand at 320.789 kb on + strand at 320.790 kb on - strand at 320.790 kb on - strand at 320.790 kb on - strand at 320.873 kb on + strand, within EX31_RS01425 at 320.874 kb on - strand, within EX31_RS01425 at 320.975 kb on + strand, within EX31_RS01425 at 321.126 kb on - strand, within EX31_RS01425 at 321.126 kb on - strand, within EX31_RS01425 at 321.137 kb on + strand, within EX31_RS01425 at 321.137 kb on + strand, within EX31_RS01425 at 321.137 kb on + strand, within EX31_RS01425 at 321.138 kb on - strand, within EX31_RS01425 at 321.138 kb on - strand, within EX31_RS01425 at 321.153 kb on - strand, within EX31_RS01425 at 321.153 kb on - strand, within EX31_RS01425 at 321.240 kb on + strand, within EX31_RS01425 at 321.241 kb on - strand, within EX31_RS01425 at 321.241 kb on - strand, within EX31_RS01425 at 321.241 kb on - strand, within EX31_RS01425 at 321.305 kb on + strand, within EX31_RS01425 at 321.434 kb on - strand, within EX31_RS01425 at 321.434 kb on - strand, within EX31_RS01425 at 321.542 kb on + strand, within EX31_RS01425 at 321.542 kb on + strand, within EX31_RS01425 at 321.543 kb on - strand, within EX31_RS01425 at 321.543 kb on - strand, within EX31_RS01425 at 321.543 kb on - strand, within EX31_RS01425 at 321.565 kb on + strand, within EX31_RS01425 at 321.614 kb on - strand, within EX31_RS01425 at 321.726 kb on - strand at 321.726 kb on - strand at 321.771 kb on + strand at 321.807 kb on + strand at 321.840 kb on + strand at 321.841 kb on - strand at 321.906 kb on + strand, within EX31_RS01430 at 321.907 kb on - strand, within EX31_RS01430 at 321.910 kb on + strand, within EX31_RS01430 at 321.911 kb on - strand, within EX31_RS01430 at 321.911 kb on - strand, within EX31_RS01430 at 321.911 kb on - strand, within EX31_RS01430 at 321.911 kb on - strand, within EX31_RS01430 at 321.911 kb on - strand, within EX31_RS01430 at 321.911 kb on - strand, within EX31_RS01430 at 321.984 kb on + strand, within EX31_RS01430 at 322.047 kb on + strand, within EX31_RS01430 at 322.163 kb on + strand, within EX31_RS01430 at 322.164 kb on - strand, within EX31_RS01430 at 322.398 kb on - strand, within EX31_RS01430 at 322.406 kb on - strand, within EX31_RS01430 at 322.409 kb on - strand, within EX31_RS01430 at 322.409 kb on - strand, within EX31_RS01430 at 322.506 kb on + strand at 322.614 kb on + strand at 322.615 kb on - strand at 322.631 kb on - strand at 322.673 kb on - strand at 322.673 kb on - strand at 322.673 kb on - strand at 322.673 kb on - strand at 322.676 kb on - strand, within EX31_RS01435
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 319,804 + EX31_RS01420 0.70 -0.3 319,804 + EX31_RS01420 0.70 +0.7 319,805 - EX31_RS01420 0.70 +1.3 319,805 - EX31_RS01420 0.70 -0.1 319,805 - EX31_RS01420 0.70 +0.1 319,882 + EX31_RS01420 0.73 -2.0 319,896 + EX31_RS01420 0.74 +0.4 320,132 - EX31_RS01420 0.84 +1.7 320,272 + EX31_RS01420 0.90 -1.1 320,273 - EX31_RS01420 0.90 -0.5 320,379 - +0.5 320,492 - +0.0 320,492 - +0.2 320,510 + +1.8 320,510 + -1.6 320,511 - +0.3 320,514 - -0.8 320,554 + -1.2 320,596 - -1.4 320,636 - +0.1 320,637 + -0.3 320,637 + +0.7 320,637 + -0.8 320,638 - +0.4 320,638 - +0.3 320,638 - -0.1 320,641 + -0.4 320,641 + -0.4 320,642 - -1.2 320,658 - +0.3 320,658 - -0.8 320,704 + -0.4 320,705 - -0.2 320,714 - -0.9 320,719 + -1.6 320,720 - +0.0 320,787 + -0.4 320,787 + -0.3 320,787 + +0.7 320,788 - -0.1 320,788 - -1.3 320,789 + -0.5 320,789 + +0.6 320,789 + -1.8 320,789 + -0.8 320,789 + +0.0 320,790 - +1.4 320,790 - +0.6 320,790 - -0.4 320,873 + EX31_RS01425 0.16 -0.3 320,874 - EX31_RS01425 0.16 +1.0 320,975 + EX31_RS01425 0.26 +1.4 321,126 - EX31_RS01425 0.40 -0.0 321,126 - EX31_RS01425 0.40 +1.0 321,137 + EX31_RS01425 0.41 +0.9 321,137 + EX31_RS01425 0.41 -0.5 321,137 + EX31_RS01425 0.41 +0.9 321,138 - EX31_RS01425 0.41 -0.1 321,138 - EX31_RS01425 0.41 -0.8 321,153 - EX31_RS01425 0.43 +0.5 321,153 - EX31_RS01425 0.43 +0.3 321,240 + EX31_RS01425 0.51 -0.3 321,241 - EX31_RS01425 0.51 +1.0 321,241 - EX31_RS01425 0.51 +0.1 321,241 - EX31_RS01425 0.51 -0.1 321,305 + EX31_RS01425 0.57 -0.5 321,434 - EX31_RS01425 0.69 +0.2 321,434 - EX31_RS01425 0.69 -2.3 321,542 + EX31_RS01425 0.80 -0.4 321,542 + EX31_RS01425 0.80 -0.2 321,543 - EX31_RS01425 0.80 +0.7 321,543 - EX31_RS01425 0.80 -0.8 321,543 - EX31_RS01425 0.80 +0.1 321,565 + EX31_RS01425 0.82 +0.7 321,614 - EX31_RS01425 0.87 +0.5 321,726 - -1.1 321,726 - -2.6 321,771 + +0.5 321,807 + +0.4 321,840 + -0.1 321,841 - -2.1 321,906 + EX31_RS01430 0.13 +0.9 321,907 - EX31_RS01430 0.13 +0.1 321,910 + EX31_RS01430 0.13 -0.2 321,911 - EX31_RS01430 0.14 -0.2 321,911 - EX31_RS01430 0.14 +0.6 321,911 - EX31_RS01430 0.14 +1.6 321,911 - EX31_RS01430 0.14 +0.2 321,911 - EX31_RS01430 0.14 -0.2 321,911 - EX31_RS01430 0.14 -0.6 321,984 + EX31_RS01430 0.24 +1.4 322,047 + EX31_RS01430 0.33 +0.1 322,163 + EX31_RS01430 0.51 -1.8 322,164 - EX31_RS01430 0.51 +0.1 322,398 - EX31_RS01430 0.85 +1.0 322,406 - EX31_RS01430 0.86 -0.5 322,409 - EX31_RS01430 0.87 -0.2 322,409 - EX31_RS01430 0.87 -0.2 322,506 + +0.9 322,614 + +1.2 322,615 - -0.6 322,631 - -0.8 322,673 - -0.1 322,673 - -0.4 322,673 - +0.2 322,673 - +0.0 322,676 - EX31_RS01435 0.10 -2.4
Or see this region's nucleotide sequence