Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24865 and EX31_RS24870 are separated by 257 nucleotides EX31_RS24870 and EX31_RS24875 are separated by 95 nucleotides EX31_RS24875 and EX31_RS24880 are separated by 19 nucleotides
EX31_RS24865: EX31_RS24865 - membrane integrity lipid transport subunit YebS, at 751,960 to 753,207
_RS24865
EX31_RS24870: EX31_RS24870 - GAF domain-containing protein, at 753,465 to 753,962
_RS24870
EX31_RS24875: EX31_RS24875 - RNA chaperone ProQ, at 754,058 to 754,747
_RS24875
EX31_RS24880: EX31_RS24880 - carboxy terminal-processing peptidase, at 754,767 to 756,839
_RS24880
Position (kb) 753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 752.472 kb on - strand, within EX31_RS24865 at 752.620 kb on - strand, within EX31_RS24865 at 752.623 kb on - strand, within EX31_RS24865 at 752.623 kb on - strand, within EX31_RS24865 at 752.628 kb on + strand, within EX31_RS24865 at 752.703 kb on - strand, within EX31_RS24865 at 752.744 kb on + strand, within EX31_RS24865 at 752.744 kb on + strand, within EX31_RS24865 at 752.744 kb on + strand, within EX31_RS24865 at 752.745 kb on - strand, within EX31_RS24865 at 752.745 kb on - strand, within EX31_RS24865 at 752.748 kb on + strand, within EX31_RS24865 at 752.791 kb on + strand, within EX31_RS24865 at 752.791 kb on + strand, within EX31_RS24865 at 752.792 kb on - strand, within EX31_RS24865 at 752.799 kb on + strand, within EX31_RS24865 at 752.800 kb on - strand, within EX31_RS24865 at 752.800 kb on - strand, within EX31_RS24865 at 752.889 kb on + strand, within EX31_RS24865 at 752.889 kb on + strand, within EX31_RS24865 at 752.889 kb on + strand, within EX31_RS24865 at 752.889 kb on + strand, within EX31_RS24865 at 752.889 kb on + strand, within EX31_RS24865 at 752.890 kb on - strand, within EX31_RS24865 at 752.890 kb on - strand, within EX31_RS24865 at 752.994 kb on + strand, within EX31_RS24865 at 752.997 kb on - strand, within EX31_RS24865 at 752.997 kb on - strand, within EX31_RS24865 at 753.141 kb on - strand at 753.179 kb on - strand at 753.190 kb on + strand at 753.210 kb on + strand at 753.211 kb on - strand at 753.220 kb on - strand at 753.239 kb on + strand at 753.240 kb on - strand at 753.245 kb on + strand at 753.245 kb on + strand at 753.245 kb on + strand at 753.245 kb on + strand at 753.245 kb on + strand at 753.245 kb on + strand at 753.246 kb on - strand at 753.246 kb on - strand at 753.246 kb on - strand at 753.246 kb on - strand at 753.246 kb on - strand at 753.246 kb on - strand at 753.316 kb on + strand at 753.316 kb on + strand at 753.316 kb on + strand at 753.316 kb on + strand at 753.316 kb on + strand at 753.316 kb on + strand at 753.316 kb on + strand at 753.317 kb on - strand at 753.317 kb on - strand at 753.319 kb on + strand at 753.319 kb on + strand at 753.320 kb on - strand at 753.338 kb on + strand at 753.338 kb on + strand at 753.338 kb on + strand at 753.338 kb on + strand at 753.339 kb on - strand at 753.339 kb on - strand at 753.339 kb on - strand at 753.339 kb on - strand at 753.339 kb on - strand at 753.339 kb on - strand at 753.339 kb on - strand at 753.343 kb on + strand at 753.344 kb on - strand at 753.373 kb on + strand at 753.395 kb on + strand at 753.395 kb on + strand at 753.395 kb on + strand at 753.395 kb on + strand at 753.396 kb on - strand at 753.396 kb on - strand at 753.403 kb on - strand at 753.408 kb on - strand at 753.444 kb on + strand at 753.444 kb on + strand at 753.445 kb on - strand at 753.459 kb on + strand at 753.460 kb on - strand at 753.460 kb on - strand at 753.462 kb on + strand at 753.462 kb on + strand at 753.462 kb on + strand at 753.462 kb on + strand at 753.462 kb on + strand at 753.462 kb on + strand at 753.462 kb on + strand at 753.462 kb on + strand at 753.462 kb on + strand at 753.463 kb on - strand at 753.463 kb on - strand at 753.463 kb on - strand at 753.463 kb on - strand at 753.463 kb on - strand at 753.463 kb on - strand at 753.463 kb on - strand at 753.470 kb on + strand at 753.483 kb on + strand at 753.493 kb on + strand at 753.536 kb on + strand, within EX31_RS24870 at 753.536 kb on + strand, within EX31_RS24870 at 753.536 kb on + strand, within EX31_RS24870 at 753.537 kb on - strand, within EX31_RS24870 at 753.542 kb on + strand, within EX31_RS24870 at 753.668 kb on + strand, within EX31_RS24870 at 753.718 kb on + strand, within EX31_RS24870 at 753.719 kb on - strand, within EX31_RS24870 at 753.755 kb on + strand, within EX31_RS24870 at 753.776 kb on + strand, within EX31_RS24870 at 753.776 kb on + strand, within EX31_RS24870 at 753.777 kb on - strand, within EX31_RS24870 at 753.826 kb on + strand, within EX31_RS24870 at 753.827 kb on - strand, within EX31_RS24870 at 753.827 kb on - strand, within EX31_RS24870 at 753.827 kb on - strand, within EX31_RS24870 at 753.829 kb on + strand, within EX31_RS24870 at 753.829 kb on + strand, within EX31_RS24870 at 753.829 kb on + strand, within EX31_RS24870 at 753.829 kb on + strand, within EX31_RS24870 at 753.829 kb on + strand, within EX31_RS24870 at 753.829 kb on + strand, within EX31_RS24870 at 753.829 kb on + strand, within EX31_RS24870 at 753.830 kb on - strand, within EX31_RS24870 at 753.830 kb on - strand, within EX31_RS24870 at 753.830 kb on - strand, within EX31_RS24870 at 753.830 kb on - strand, within EX31_RS24870 at 753.839 kb on + strand, within EX31_RS24870 at 753.839 kb on + strand, within EX31_RS24870 at 753.839 kb on + strand, within EX31_RS24870 at 753.840 kb on - strand, within EX31_RS24870 at 753.840 kb on - strand, within EX31_RS24870 at 753.892 kb on + strand, within EX31_RS24870 at 753.892 kb on + strand, within EX31_RS24870 at 753.893 kb on - strand, within EX31_RS24870 at 753.955 kb on + strand at 753.983 kb on + strand at 753.983 kb on + strand at 753.983 kb on + strand at 753.983 kb on + strand at 753.983 kb on + strand at 753.984 kb on - strand at 753.984 kb on - strand at 753.984 kb on - strand at 753.986 kb on + strand at 753.998 kb on + strand at 753.998 kb on + strand at 753.998 kb on + strand at 753.998 kb on + strand at 753.998 kb on + strand at 753.999 kb on - strand at 753.999 kb on - strand at 753.999 kb on - strand at 753.999 kb on - strand at 753.999 kb on - strand at 754.000 kb on + strand at 754.000 kb on + strand at 754.043 kb on + strand at 754.044 kb on - strand at 754.044 kb on - strand at 754.073 kb on - strand at 754.073 kb on - strand at 754.073 kb on - strand at 754.084 kb on + strand at 754.085 kb on - strand at 754.087 kb on + strand at 754.087 kb on + strand at 754.087 kb on + strand at 754.088 kb on - strand at 754.227 kb on + strand, within EX31_RS24875 at 754.227 kb on + strand, within EX31_RS24875 at 754.227 kb on + strand, within EX31_RS24875 at 754.228 kb on - strand, within EX31_RS24875 at 754.247 kb on + strand, within EX31_RS24875 at 754.247 kb on + strand, within EX31_RS24875 at 754.247 kb on + strand, within EX31_RS24875 at 754.248 kb on - strand, within EX31_RS24875 at 754.248 kb on - strand, within EX31_RS24875 at 754.249 kb on + strand, within EX31_RS24875 at 754.249 kb on + strand, within EX31_RS24875 at 754.249 kb on + strand, within EX31_RS24875 at 754.249 kb on + strand, within EX31_RS24875 at 754.250 kb on - strand, within EX31_RS24875 at 754.250 kb on - strand, within EX31_RS24875 at 754.250 kb on - strand, within EX31_RS24875 at 754.271 kb on + strand, within EX31_RS24875 at 754.279 kb on + strand, within EX31_RS24875 at 754.312 kb on + strand, within EX31_RS24875 at 754.312 kb on + strand, within EX31_RS24875 at 754.344 kb on + strand, within EX31_RS24875 at 754.344 kb on + strand, within EX31_RS24875 at 754.344 kb on + strand, within EX31_RS24875 at 754.344 kb on + strand, within EX31_RS24875 at 754.344 kb on + strand, within EX31_RS24875 at 754.344 kb on + strand, within EX31_RS24875 at 754.357 kb on + strand, within EX31_RS24875 at 754.358 kb on - strand, within EX31_RS24875 at 754.414 kb on + strand, within EX31_RS24875 at 754.537 kb on + strand, within EX31_RS24875 at 754.537 kb on + strand, within EX31_RS24875 at 754.537 kb on + strand, within EX31_RS24875 at 754.538 kb on - strand, within EX31_RS24875 at 754.856 kb on + strand at 754.856 kb on + strand at 754.856 kb on + strand at 754.856 kb on + strand at 754.856 kb on + strand at 754.883 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 752,472 - EX31_RS24865 0.41 +0.4 752,620 - EX31_RS24865 0.53 -0.2 752,623 - EX31_RS24865 0.53 -0.2 752,623 - EX31_RS24865 0.53 +0.6 752,628 + EX31_RS24865 0.54 -1.6 752,703 - EX31_RS24865 0.60 +0.4 752,744 + EX31_RS24865 0.63 +0.2 752,744 + EX31_RS24865 0.63 +1.0 752,744 + EX31_RS24865 0.63 -0.1 752,745 - EX31_RS24865 0.63 +0.1 752,745 - EX31_RS24865 0.63 -0.6 752,748 + EX31_RS24865 0.63 +1.1 752,791 + EX31_RS24865 0.67 +0.4 752,791 + EX31_RS24865 0.67 -3.1 752,792 - EX31_RS24865 0.67 -1.0 752,799 + EX31_RS24865 0.67 +0.6 752,800 - EX31_RS24865 0.67 -1.4 752,800 - EX31_RS24865 0.67 -2.1 752,889 + EX31_RS24865 0.74 +0.5 752,889 + EX31_RS24865 0.74 +0.0 752,889 + EX31_RS24865 0.74 -1.0 752,889 + EX31_RS24865 0.74 +0.4 752,889 + EX31_RS24865 0.74 +0.8 752,890 - EX31_RS24865 0.75 +0.3 752,890 - EX31_RS24865 0.75 -2.0 752,994 + EX31_RS24865 0.83 -0.4 752,997 - EX31_RS24865 0.83 -0.1 752,997 - EX31_RS24865 0.83 -0.3 753,141 - -1.0 753,179 - -0.6 753,190 + -0.2 753,210 + -0.0 753,211 - +0.9 753,220 - +0.1 753,239 + +0.8 753,240 - -0.7 753,245 + -2.1 753,245 + +0.3 753,245 + +0.7 753,245 + +1.8 753,245 + +0.6 753,245 + +0.3 753,246 - +0.7 753,246 - -2.4 753,246 - -0.0 753,246 - +0.7 753,246 - -0.6 753,246 - -0.8 753,316 + -0.7 753,316 + -0.0 753,316 + -0.6 753,316 + -0.3 753,316 + +1.1 753,316 + +0.5 753,316 + +0.1 753,317 - +0.1 753,317 - -0.3 753,319 + +0.6 753,319 + +2.6 753,320 - +0.4 753,338 + +2.2 753,338 + -0.6 753,338 + -1.4 753,338 + -0.5 753,339 - -1.7 753,339 - -0.6 753,339 - +1.4 753,339 - +0.1 753,339 - -0.5 753,339 - -0.4 753,339 - -1.1 753,343 + -1.1 753,344 - -0.1 753,373 + +0.3 753,395 + -0.3 753,395 + +0.6 753,395 + -0.4 753,395 + -0.2 753,396 - +0.1 753,396 - +0.4 753,403 - +0.6 753,408 - +0.2 753,444 + +0.0 753,444 + -0.1 753,445 - +0.2 753,459 + -0.9 753,460 - +1.0 753,460 - -0.0 753,462 + +0.0 753,462 + -0.2 753,462 + -0.0 753,462 + +0.4 753,462 + +0.5 753,462 + +0.6 753,462 + +0.4 753,462 + -0.5 753,462 + +0.8 753,463 - +1.2 753,463 - +0.3 753,463 - +1.0 753,463 - -1.6 753,463 - +0.4 753,463 - -1.6 753,463 - +0.4 753,470 + -0.4 753,483 + -1.1 753,493 + +0.4 753,536 + EX31_RS24870 0.14 -0.2 753,536 + EX31_RS24870 0.14 -0.8 753,536 + EX31_RS24870 0.14 -0.3 753,537 - EX31_RS24870 0.14 -2.4 753,542 + EX31_RS24870 0.15 +0.9 753,668 + EX31_RS24870 0.41 -0.8 753,718 + EX31_RS24870 0.51 +0.0 753,719 - EX31_RS24870 0.51 -0.7 753,755 + EX31_RS24870 0.58 -0.1 753,776 + EX31_RS24870 0.62 -1.0 753,776 + EX31_RS24870 0.62 -0.9 753,777 - EX31_RS24870 0.63 -0.3 753,826 + EX31_RS24870 0.72 +0.6 753,827 - EX31_RS24870 0.73 +0.6 753,827 - EX31_RS24870 0.73 -0.2 753,827 - EX31_RS24870 0.73 -0.7 753,829 + EX31_RS24870 0.73 -1.0 753,829 + EX31_RS24870 0.73 -2.8 753,829 + EX31_RS24870 0.73 -0.5 753,829 + EX31_RS24870 0.73 -0.3 753,829 + EX31_RS24870 0.73 -0.4 753,829 + EX31_RS24870 0.73 -1.6 753,829 + EX31_RS24870 0.73 -1.7 753,830 - EX31_RS24870 0.73 -0.0 753,830 - EX31_RS24870 0.73 -0.0 753,830 - EX31_RS24870 0.73 +1.0 753,830 - EX31_RS24870 0.73 +0.6 753,839 + EX31_RS24870 0.75 +0.1 753,839 + EX31_RS24870 0.75 -0.9 753,839 + EX31_RS24870 0.75 +1.2 753,840 - EX31_RS24870 0.75 -0.1 753,840 - EX31_RS24870 0.75 +0.4 753,892 + EX31_RS24870 0.86 -0.1 753,892 + EX31_RS24870 0.86 -0.3 753,893 - EX31_RS24870 0.86 +2.4 753,955 + +0.1 753,983 + +0.8 753,983 + -0.6 753,983 + -0.1 753,983 + -0.5 753,983 + +0.7 753,984 - +0.0 753,984 - -0.7 753,984 - +0.3 753,986 + +0.9 753,998 + +0.4 753,998 + +0.6 753,998 + -0.3 753,998 + -0.1 753,998 + +0.5 753,999 - -0.2 753,999 - +0.0 753,999 - -2.5 753,999 - -0.5 753,999 - -0.4 754,000 + +0.1 754,000 + +0.4 754,043 + +0.3 754,044 - +2.2 754,044 - +0.1 754,073 - +0.6 754,073 - -0.9 754,073 - -1.2 754,084 + -2.5 754,085 - -1.1 754,087 + +0.3 754,087 + +0.4 754,087 + -1.6 754,088 - -3.0 754,227 + EX31_RS24875 0.24 +0.1 754,227 + EX31_RS24875 0.24 +1.0 754,227 + EX31_RS24875 0.24 -0.8 754,228 - EX31_RS24875 0.25 +1.1 754,247 + EX31_RS24875 0.27 +0.3 754,247 + EX31_RS24875 0.27 -0.9 754,247 + EX31_RS24875 0.27 -1.3 754,248 - EX31_RS24875 0.28 -1.3 754,248 - EX31_RS24875 0.28 -0.6 754,249 + EX31_RS24875 0.28 +0.6 754,249 + EX31_RS24875 0.28 +0.3 754,249 + EX31_RS24875 0.28 -0.4 754,249 + EX31_RS24875 0.28 +0.5 754,250 - EX31_RS24875 0.28 -1.9 754,250 - EX31_RS24875 0.28 +0.3 754,250 - EX31_RS24875 0.28 -1.7 754,271 + EX31_RS24875 0.31 -0.0 754,279 + EX31_RS24875 0.32 +0.5 754,312 + EX31_RS24875 0.37 +0.6 754,312 + EX31_RS24875 0.37 -0.6 754,344 + EX31_RS24875 0.41 -0.8 754,344 + EX31_RS24875 0.41 +0.2 754,344 + EX31_RS24875 0.41 -0.6 754,344 + EX31_RS24875 0.41 +0.0 754,344 + EX31_RS24875 0.41 -0.4 754,344 + EX31_RS24875 0.41 -0.2 754,357 + EX31_RS24875 0.43 -1.1 754,358 - EX31_RS24875 0.43 -0.7 754,414 + EX31_RS24875 0.52 -1.9 754,537 + EX31_RS24875 0.69 +0.5 754,537 + EX31_RS24875 0.69 +0.5 754,537 + EX31_RS24875 0.69 -1.2 754,538 - EX31_RS24875 0.70 -2.4 754,856 + -0.2 754,856 + +0.4 754,856 + +0.1 754,856 + -0.6 754,856 + +0.1 754,883 + -0.5
Or see this region's nucleotide sequence