Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22170 and EX31_RS22175 are separated by 66 nucleotides EX31_RS22175 and EX31_RS22180 overlap by 38 nucleotides
EX31_RS22170: EX31_RS22170 - tRNA 4-thiouridine(8) synthase ThiI, at 181,984 to 183,432
_RS22170
EX31_RS22175: EX31_RS22175 - protein deglycase YajL, at 183,499 to 184,107
_RS22175
EX31_RS22180: EX31_RS22180 - 2-dehydropantoate 2-reductase, at 184,070 to 184,981
_RS22180
Position (kb) 183
184
185 Strain fitness (log2 ratio) -2
-1
0
1
2 at 182.566 kb on + strand, within EX31_RS22170 at 182.566 kb on + strand, within EX31_RS22170 at 182.566 kb on + strand, within EX31_RS22170 at 182.566 kb on + strand, within EX31_RS22170 at 182.567 kb on - strand, within EX31_RS22170 at 182.568 kb on + strand, within EX31_RS22170 at 182.568 kb on + strand, within EX31_RS22170 at 182.568 kb on + strand, within EX31_RS22170 at 182.568 kb on + strand, within EX31_RS22170 at 182.568 kb on + strand, within EX31_RS22170 at 182.569 kb on - strand, within EX31_RS22170 at 182.599 kb on + strand, within EX31_RS22170 at 182.659 kb on + strand, within EX31_RS22170 at 182.659 kb on + strand, within EX31_RS22170 at 182.700 kb on + strand, within EX31_RS22170 at 182.781 kb on + strand, within EX31_RS22170 at 182.781 kb on + strand, within EX31_RS22170 at 182.781 kb on + strand, within EX31_RS22170 at 182.782 kb on - strand, within EX31_RS22170 at 182.782 kb on - strand, within EX31_RS22170 at 182.916 kb on + strand, within EX31_RS22170 at 182.916 kb on + strand, within EX31_RS22170 at 182.916 kb on + strand, within EX31_RS22170 at 182.917 kb on - strand, within EX31_RS22170 at 182.943 kb on + strand, within EX31_RS22170 at 183.147 kb on + strand, within EX31_RS22170 at 183.148 kb on - strand, within EX31_RS22170 at 183.292 kb on + strand at 183.337 kb on + strand at 183.337 kb on + strand at 183.337 kb on + strand at 183.346 kb on + strand at 183.346 kb on + strand at 183.346 kb on + strand at 183.385 kb on + strand at 183.386 kb on - strand at 183.386 kb on - strand at 183.406 kb on - strand at 183.430 kb on + strand at 183.448 kb on + strand at 183.448 kb on + strand at 183.448 kb on + strand at 183.449 kb on - strand at 183.527 kb on + strand at 183.527 kb on + strand at 183.528 kb on - strand at 183.528 kb on - strand at 183.528 kb on - strand at 183.528 kb on - strand at 183.528 kb on - strand at 183.531 kb on + strand at 183.531 kb on + strand at 183.531 kb on + strand at 183.532 kb on - strand at 183.532 kb on - strand at 183.532 kb on - strand at 183.532 kb on - strand at 183.532 kb on - strand at 183.533 kb on + strand at 183.533 kb on + strand at 183.533 kb on + strand at 183.534 kb on - strand at 183.534 kb on - strand at 183.534 kb on - strand at 183.534 kb on - strand at 183.534 kb on - strand at 183.696 kb on + strand, within EX31_RS22175 at 183.697 kb on - strand, within EX31_RS22175 at 183.719 kb on - strand, within EX31_RS22175 at 183.738 kb on + strand, within EX31_RS22175 at 183.754 kb on + strand, within EX31_RS22175 at 183.764 kb on + strand, within EX31_RS22175 at 183.764 kb on + strand, within EX31_RS22175 at 183.796 kb on - strand, within EX31_RS22175 at 183.796 kb on - strand, within EX31_RS22175 at 183.796 kb on - strand, within EX31_RS22175 at 183.929 kb on - strand, within EX31_RS22175 at 183.929 kb on - strand, within EX31_RS22175 at 183.929 kb on - strand, within EX31_RS22175 at 183.929 kb on - strand, within EX31_RS22175 at 183.929 kb on - strand, within EX31_RS22175 at 183.929 kb on - strand, within EX31_RS22175 at 183.929 kb on - strand, within EX31_RS22175 at 183.929 kb on - strand, within EX31_RS22175 at 183.929 kb on - strand, within EX31_RS22175 at 183.952 kb on - strand, within EX31_RS22175 at 184.060 kb on + strand at 184.060 kb on + strand at 184.061 kb on - strand at 184.126 kb on + strand at 184.127 kb on - strand at 184.139 kb on + strand at 184.139 kb on + strand at 184.151 kb on - strand at 184.175 kb on - strand, within EX31_RS22180 at 184.194 kb on + strand, within EX31_RS22180 at 184.195 kb on - strand, within EX31_RS22180 at 184.195 kb on - strand, within EX31_RS22180 at 184.204 kb on + strand, within EX31_RS22180 at 184.204 kb on + strand, within EX31_RS22180 at 184.205 kb on - strand, within EX31_RS22180 at 184.205 kb on - strand, within EX31_RS22180 at 184.205 kb on - strand, within EX31_RS22180 at 184.205 kb on - strand, within EX31_RS22180 at 184.205 kb on - strand, within EX31_RS22180 at 184.205 kb on - strand, within EX31_RS22180 at 184.205 kb on - strand, within EX31_RS22180 at 184.206 kb on + strand, within EX31_RS22180 at 184.207 kb on - strand, within EX31_RS22180 at 184.207 kb on - strand, within EX31_RS22180 at 184.207 kb on - strand, within EX31_RS22180 at 184.207 kb on - strand, within EX31_RS22180 at 184.287 kb on + strand, within EX31_RS22180 at 184.383 kb on + strand, within EX31_RS22180 at 184.384 kb on - strand, within EX31_RS22180 at 184.413 kb on + strand, within EX31_RS22180 at 184.413 kb on + strand, within EX31_RS22180 at 184.510 kb on + strand, within EX31_RS22180 at 184.664 kb on + strand, within EX31_RS22180 at 184.665 kb on - strand, within EX31_RS22180 at 184.665 kb on - strand, within EX31_RS22180 at 184.701 kb on - strand, within EX31_RS22180 at 184.701 kb on - strand, within EX31_RS22180 at 184.701 kb on - strand, within EX31_RS22180 at 184.714 kb on + strand, within EX31_RS22180 at 184.715 kb on - strand, within EX31_RS22180 at 184.720 kb on + strand, within EX31_RS22180 at 184.720 kb on + strand, within EX31_RS22180 at 184.720 kb on + strand, within EX31_RS22180 at 184.720 kb on + strand, within EX31_RS22180 at 184.721 kb on - strand, within EX31_RS22180 at 184.743 kb on - strand, within EX31_RS22180 at 184.784 kb on + strand, within EX31_RS22180 at 184.785 kb on - strand, within EX31_RS22180 at 184.785 kb on - strand, within EX31_RS22180 at 184.817 kb on - strand, within EX31_RS22180 at 184.819 kb on + strand, within EX31_RS22180 at 184.819 kb on + strand, within EX31_RS22180 at 184.819 kb on + strand, within EX31_RS22180 at 184.819 kb on + strand, within EX31_RS22180 at 184.825 kb on + strand, within EX31_RS22180 at 184.834 kb on + strand, within EX31_RS22180 at 184.835 kb on - strand, within EX31_RS22180 at 184.924 kb on - strand at 184.924 kb on - strand at 184.968 kb on - strand at 185.021 kb on + strand at 185.022 kb on - strand at 185.037 kb on + strand at 185.037 kb on + strand at 185.061 kb on + strand at 185.061 kb on + strand at 185.061 kb on + strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.081 kb on + strand at 185.082 kb on - strand at 185.082 kb on - strand at 185.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 182,566 + EX31_RS22170 0.40 -0.4 182,566 + EX31_RS22170 0.40 -0.3 182,566 + EX31_RS22170 0.40 +1.4 182,566 + EX31_RS22170 0.40 -0.4 182,567 - EX31_RS22170 0.40 +0.1 182,568 + EX31_RS22170 0.40 -0.1 182,568 + EX31_RS22170 0.40 +0.9 182,568 + EX31_RS22170 0.40 -0.0 182,568 + EX31_RS22170 0.40 -0.3 182,568 + EX31_RS22170 0.40 +0.4 182,569 - EX31_RS22170 0.40 +0.3 182,599 + EX31_RS22170 0.42 -1.4 182,659 + EX31_RS22170 0.47 -1.4 182,659 + EX31_RS22170 0.47 -0.1 182,700 + EX31_RS22170 0.49 +0.5 182,781 + EX31_RS22170 0.55 +0.1 182,781 + EX31_RS22170 0.55 +1.7 182,781 + EX31_RS22170 0.55 +0.4 182,782 - EX31_RS22170 0.55 -0.0 182,782 - EX31_RS22170 0.55 -0.3 182,916 + EX31_RS22170 0.64 -1.2 182,916 + EX31_RS22170 0.64 +0.0 182,916 + EX31_RS22170 0.64 -0.0 182,917 - EX31_RS22170 0.64 +1.2 182,943 + EX31_RS22170 0.66 +0.8 183,147 + EX31_RS22170 0.80 -0.2 183,148 - EX31_RS22170 0.80 -0.3 183,292 + +1.0 183,337 + -0.0 183,337 + -0.3 183,337 + -0.1 183,346 + +0.9 183,346 + -0.1 183,346 + -0.7 183,385 + +0.0 183,386 - +2.4 183,386 - -0.6 183,406 - +0.5 183,430 + -0.4 183,448 + -2.1 183,448 + -0.5 183,448 + -1.6 183,449 - -0.2 183,527 + +0.3 183,527 + +0.4 183,528 - -0.3 183,528 - -0.3 183,528 - +1.5 183,528 - +1.6 183,528 - +0.1 183,531 + +1.4 183,531 + +1.0 183,531 + +0.4 183,532 - +0.1 183,532 - +0.3 183,532 - +0.7 183,532 - -0.1 183,532 - -0.9 183,533 + -0.9 183,533 + -1.0 183,533 + +0.4 183,534 - -2.0 183,534 - -2.5 183,534 - +0.9 183,534 - -0.1 183,534 - +1.3 183,696 + EX31_RS22175 0.32 -1.1 183,697 - EX31_RS22175 0.33 -0.4 183,719 - EX31_RS22175 0.36 +0.5 183,738 + EX31_RS22175 0.39 +0.4 183,754 + EX31_RS22175 0.42 +0.8 183,764 + EX31_RS22175 0.44 -1.9 183,764 + EX31_RS22175 0.44 -0.4 183,796 - EX31_RS22175 0.49 -0.2 183,796 - EX31_RS22175 0.49 -0.2 183,796 - EX31_RS22175 0.49 -0.5 183,929 - EX31_RS22175 0.71 -1.1 183,929 - EX31_RS22175 0.71 -0.1 183,929 - EX31_RS22175 0.71 -1.1 183,929 - EX31_RS22175 0.71 +0.0 183,929 - EX31_RS22175 0.71 -0.2 183,929 - EX31_RS22175 0.71 +0.1 183,929 - EX31_RS22175 0.71 -0.6 183,929 - EX31_RS22175 0.71 -0.7 183,929 - EX31_RS22175 0.71 -2.3 183,952 - EX31_RS22175 0.74 -0.3 184,060 + -1.2 184,060 + -0.3 184,061 - -1.2 184,126 + +0.3 184,127 - -0.6 184,139 + -0.7 184,139 + -1.1 184,151 - +0.2 184,175 - EX31_RS22180 0.12 +0.0 184,194 + EX31_RS22180 0.14 +0.7 184,195 - EX31_RS22180 0.14 +0.5 184,195 - EX31_RS22180 0.14 -0.2 184,204 + EX31_RS22180 0.15 -0.8 184,204 + EX31_RS22180 0.15 -0.7 184,205 - EX31_RS22180 0.15 -0.4 184,205 - EX31_RS22180 0.15 -2.2 184,205 - EX31_RS22180 0.15 -0.1 184,205 - EX31_RS22180 0.15 +0.7 184,205 - EX31_RS22180 0.15 +0.3 184,205 - EX31_RS22180 0.15 -0.7 184,205 - EX31_RS22180 0.15 +0.5 184,206 + EX31_RS22180 0.15 -1.1 184,207 - EX31_RS22180 0.15 -2.7 184,207 - EX31_RS22180 0.15 -0.1 184,207 - EX31_RS22180 0.15 +0.5 184,207 - EX31_RS22180 0.15 -1.5 184,287 + EX31_RS22180 0.24 -2.4 184,383 + EX31_RS22180 0.34 -0.3 184,384 - EX31_RS22180 0.34 +0.8 184,413 + EX31_RS22180 0.38 -0.9 184,413 + EX31_RS22180 0.38 +0.9 184,510 + EX31_RS22180 0.48 -0.6 184,664 + EX31_RS22180 0.65 +0.3 184,665 - EX31_RS22180 0.65 +1.3 184,665 - EX31_RS22180 0.65 -0.4 184,701 - EX31_RS22180 0.69 -0.2 184,701 - EX31_RS22180 0.69 -1.0 184,701 - EX31_RS22180 0.69 -0.1 184,714 + EX31_RS22180 0.71 +0.2 184,715 - EX31_RS22180 0.71 -0.6 184,720 + EX31_RS22180 0.71 +0.2 184,720 + EX31_RS22180 0.71 +0.6 184,720 + EX31_RS22180 0.71 +0.3 184,720 + EX31_RS22180 0.71 +0.1 184,721 - EX31_RS22180 0.71 +0.7 184,743 - EX31_RS22180 0.74 -1.9 184,784 + EX31_RS22180 0.78 +0.5 184,785 - EX31_RS22180 0.78 +0.5 184,785 - EX31_RS22180 0.78 +0.0 184,817 - EX31_RS22180 0.82 -1.9 184,819 + EX31_RS22180 0.82 +1.2 184,819 + EX31_RS22180 0.82 -1.7 184,819 + EX31_RS22180 0.82 +0.0 184,819 + EX31_RS22180 0.82 +1.3 184,825 + EX31_RS22180 0.83 -0.8 184,834 + EX31_RS22180 0.84 +1.7 184,835 - EX31_RS22180 0.84 +0.1 184,924 - +0.2 184,924 - +1.0 184,968 - -0.3 185,021 + +1.1 185,022 - -0.6 185,037 + -1.2 185,037 + -1.0 185,061 + +0.1 185,061 + -0.5 185,061 + -1.2 185,062 - +0.5 185,062 - +0.0 185,062 - +0.9 185,062 - -1.5 185,062 - +0.5 185,062 - +0.8 185,062 - +0.4 185,062 - +0.4 185,081 + +1.0 185,082 - -0.6 185,082 - -0.1 185,082 - -2.4
Or see this region's nucleotide sequence