Strain Fitness in Rahnella sp. WP5 around EX31_RS21340

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21335 and EX31_RS21340 are separated by 88 nucleotidesEX31_RS21340 and EX31_RS21345 are separated by 80 nucleotides EX31_RS21335: EX31_RS21335 - fimbrial protein, at 1,123 to 3,816 _RS21335 EX31_RS21340: EX31_RS21340 - Cro/Cl family transcriptional regulator, at 3,905 to 4,408 _RS21340 EX31_RS21345: EX31_RS21345 - fimbria/pilus periplasmic chaperone, at 4,489 to 5,232 _RS21345 Position (kb) 3 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3.002 kb on + strand, within EX31_RS21335at 3.003 kb on - strand, within EX31_RS21335at 3.003 kb on - strand, within EX31_RS21335at 3.066 kb on + strand, within EX31_RS21335at 3.066 kb on + strand, within EX31_RS21335at 3.070 kb on - strand, within EX31_RS21335at 3.122 kb on + strand, within EX31_RS21335at 3.122 kb on + strand, within EX31_RS21335at 3.122 kb on + strand, within EX31_RS21335at 3.122 kb on + strand, within EX31_RS21335at 3.122 kb on + strand, within EX31_RS21335at 3.122 kb on + strand, within EX31_RS21335at 3.122 kb on + strand, within EX31_RS21335at 3.123 kb on - strand, within EX31_RS21335at 3.123 kb on - strand, within EX31_RS21335at 3.132 kb on + strand, within EX31_RS21335at 3.133 kb on - strand, within EX31_RS21335at 3.136 kb on + strand, within EX31_RS21335at 3.136 kb on + strand, within EX31_RS21335at 3.136 kb on + strand, within EX31_RS21335at 3.137 kb on - strand, within EX31_RS21335at 3.137 kb on - strand, within EX31_RS21335at 3.137 kb on - strand, within EX31_RS21335at 3.137 kb on - strand, within EX31_RS21335at 3.137 kb on - strand, within EX31_RS21335at 3.153 kb on - strand, within EX31_RS21335at 3.169 kb on + strand, within EX31_RS21335at 3.169 kb on + strand, within EX31_RS21335at 3.169 kb on + strand, within EX31_RS21335at 3.169 kb on + strand, within EX31_RS21335at 3.170 kb on - strand, within EX31_RS21335at 3.230 kb on + strand, within EX31_RS21335at 3.231 kb on - strand, within EX31_RS21335at 3.268 kb on + strand, within EX31_RS21335at 3.268 kb on + strand, within EX31_RS21335at 3.268 kb on + strand, within EX31_RS21335at 3.268 kb on + strand, within EX31_RS21335at 3.268 kb on + strand, within EX31_RS21335at 3.269 kb on - strand, within EX31_RS21335at 3.269 kb on - strand, within EX31_RS21335at 3.269 kb on - strand, within EX31_RS21335at 3.269 kb on - strand, within EX31_RS21335at 3.325 kb on + strand, within EX31_RS21335at 3.356 kb on + strand, within EX31_RS21335at 3.356 kb on + strand, within EX31_RS21335at 3.356 kb on + strand, within EX31_RS21335at 3.356 kb on + strand, within EX31_RS21335at 3.356 kb on + strand, within EX31_RS21335at 3.357 kb on - strand, within EX31_RS21335at 3.357 kb on - strand, within EX31_RS21335at 3.357 kb on - strand, within EX31_RS21335at 3.357 kb on - strand, within EX31_RS21335at 3.357 kb on - strand, within EX31_RS21335at 3.357 kb on - strand, within EX31_RS21335at 3.357 kb on - strand, within EX31_RS21335at 3.359 kb on + strand, within EX31_RS21335at 3.359 kb on + strand, within EX31_RS21335at 3.359 kb on + strand, within EX31_RS21335at 3.360 kb on - strand, within EX31_RS21335at 3.434 kb on + strand, within EX31_RS21335at 3.435 kb on - strand, within EX31_RS21335at 3.435 kb on - strand, within EX31_RS21335at 3.594 kb on + strandat 3.594 kb on + strandat 3.595 kb on - strandat 3.595 kb on - strandat 3.599 kb on - strandat 3.616 kb on - strandat 3.616 kb on - strandat 3.652 kb on + strandat 3.745 kb on + strandat 3.746 kb on - strandat 3.746 kb on - strandat 3.763 kb on + strandat 3.808 kb on - strandat 3.808 kb on - strandat 3.808 kb on - strandat 3.808 kb on - strandat 3.808 kb on - strandat 3.817 kb on + strandat 3.932 kb on + strandat 3.954 kb on + strandat 3.954 kb on + strandat 3.954 kb on + strandat 3.954 kb on + strandat 3.954 kb on + strandat 3.954 kb on + strandat 3.954 kb on + strandat 3.955 kb on - strandat 3.955 kb on - strandat 3.955 kb on - strandat 3.955 kb on - strandat 3.955 kb on - strandat 3.959 kb on - strand, within EX31_RS21340at 4.027 kb on + strand, within EX31_RS21340at 4.048 kb on + strand, within EX31_RS21340at 4.049 kb on - strand, within EX31_RS21340at 4.049 kb on - strand, within EX31_RS21340at 4.049 kb on - strand, within EX31_RS21340at 4.049 kb on - strand, within EX31_RS21340at 4.099 kb on + strand, within EX31_RS21340at 4.100 kb on - strand, within EX31_RS21340at 4.100 kb on - strand, within EX31_RS21340at 4.114 kb on + strand, within EX31_RS21340at 4.243 kb on + strand, within EX31_RS21340at 4.245 kb on + strand, within EX31_RS21340at 4.245 kb on + strand, within EX31_RS21340at 4.245 kb on + strand, within EX31_RS21340at 4.246 kb on - strand, within EX31_RS21340at 4.246 kb on - strand, within EX31_RS21340at 4.246 kb on - strand, within EX31_RS21340at 4.268 kb on + strand, within EX31_RS21340at 4.269 kb on - strand, within EX31_RS21340at 4.269 kb on - strand, within EX31_RS21340at 4.271 kb on + strand, within EX31_RS21340at 4.272 kb on - strand, within EX31_RS21340at 4.272 kb on - strand, within EX31_RS21340at 4.435 kb on + strandat 4.613 kb on + strand, within EX31_RS21345at 4.613 kb on + strand, within EX31_RS21345at 4.613 kb on + strand, within EX31_RS21345at 4.644 kb on + strand, within EX31_RS21345at 4.644 kb on + strand, within EX31_RS21345at 4.675 kb on + strand, within EX31_RS21345at 4.849 kb on - strand, within EX31_RS21345at 4.878 kb on - strand, within EX31_RS21345at 4.929 kb on + strand, within EX31_RS21345at 5.093 kb on - strand, within EX31_RS21345at 5.149 kb on + strand, within EX31_RS21345at 5.255 kb on - strandat 5.375 kb on - strandat 5.395 kb on + strandat 5.397 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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3,002 + EX31_RS21335 0.70 +0.7
3,003 - EX31_RS21335 0.70 -0.0
3,003 - EX31_RS21335 0.70 +0.7
3,066 + EX31_RS21335 0.72 -1.2
3,066 + EX31_RS21335 0.72 +0.2
3,070 - EX31_RS21335 0.72 +0.3
3,122 + EX31_RS21335 0.74 +0.3
3,122 + EX31_RS21335 0.74 -0.4
3,122 + EX31_RS21335 0.74 -0.4
3,122 + EX31_RS21335 0.74 -1.5
3,122 + EX31_RS21335 0.74 +0.8
3,122 + EX31_RS21335 0.74 -1.0
3,122 + EX31_RS21335 0.74 -0.2
3,123 - EX31_RS21335 0.74 -2.0
3,123 - EX31_RS21335 0.74 +0.7
3,132 + EX31_RS21335 0.75 -0.9
3,133 - EX31_RS21335 0.75 +0.9
3,136 + EX31_RS21335 0.75 +0.1
3,136 + EX31_RS21335 0.75 +0.7
3,136 + EX31_RS21335 0.75 -1.8
3,137 - EX31_RS21335 0.75 -0.0
3,137 - EX31_RS21335 0.75 +0.3
3,137 - EX31_RS21335 0.75 -1.5
3,137 - EX31_RS21335 0.75 -0.4
3,137 - EX31_RS21335 0.75 -0.6
3,153 - EX31_RS21335 0.75 +0.8
3,169 + EX31_RS21335 0.76 +0.5
3,169 + EX31_RS21335 0.76 +0.2
3,169 + EX31_RS21335 0.76 +0.4
3,169 + EX31_RS21335 0.76 -0.4
3,170 - EX31_RS21335 0.76 +0.3
3,230 + EX31_RS21335 0.78 -1.2
3,231 - EX31_RS21335 0.78 -0.0
3,268 + EX31_RS21335 0.80 -3.4
3,268 + EX31_RS21335 0.80 -0.4
3,268 + EX31_RS21335 0.80 -1.5
3,268 + EX31_RS21335 0.80 -0.9
3,268 + EX31_RS21335 0.80 -0.3
3,269 - EX31_RS21335 0.80 +0.3
3,269 - EX31_RS21335 0.80 -0.3
3,269 - EX31_RS21335 0.80 -3.2
3,269 - EX31_RS21335 0.80 +0.3
3,325 + EX31_RS21335 0.82 +0.7
3,356 + EX31_RS21335 0.83 +0.3
3,356 + EX31_RS21335 0.83 +0.4
3,356 + EX31_RS21335 0.83 +0.7
3,356 + EX31_RS21335 0.83 -0.0
3,356 + EX31_RS21335 0.83 +0.6
3,357 - EX31_RS21335 0.83 -0.2
3,357 - EX31_RS21335 0.83 +0.4
3,357 - EX31_RS21335 0.83 +0.2
3,357 - EX31_RS21335 0.83 +0.7
3,357 - EX31_RS21335 0.83 -1.2
3,357 - EX31_RS21335 0.83 +0.5
3,357 - EX31_RS21335 0.83 +0.4
3,359 + EX31_RS21335 0.83 +0.7
3,359 + EX31_RS21335 0.83 -1.0
3,359 + EX31_RS21335 0.83 -0.4
3,360 - EX31_RS21335 0.83 -1.5
3,434 + EX31_RS21335 0.86 -0.9
3,435 - EX31_RS21335 0.86 +0.5
3,435 - EX31_RS21335 0.86 +0.4
3,594 + -0.8
3,594 + +0.5
3,595 - +0.3
3,595 - +0.0
3,599 - +1.1
3,616 - +0.5
3,616 - +0.2
3,652 + -0.4
3,745 + +1.5
3,746 - -0.8
3,746 - -0.1
3,763 + +1.2
3,808 - -0.9
3,808 - -0.5
3,808 - -1.2
3,808 - +0.7
3,808 - +0.0
3,817 + -0.3
3,932 + -0.2
3,954 + -0.5
3,954 + +0.9
3,954 + -0.1
3,954 + -0.4
3,954 + +0.3
3,954 + +0.5
3,954 + +0.3
3,955 - +0.1
3,955 - +0.9
3,955 - -0.2
3,955 - -0.1
3,955 - +0.2
3,959 - EX31_RS21340 0.11 +0.0
4,027 + EX31_RS21340 0.24 +0.7
4,048 + EX31_RS21340 0.28 -0.5
4,049 - EX31_RS21340 0.29 +0.3
4,049 - EX31_RS21340 0.29 -0.0
4,049 - EX31_RS21340 0.29 +0.4
4,049 - EX31_RS21340 0.29 +0.8
4,099 + EX31_RS21340 0.38 -0.1
4,100 - EX31_RS21340 0.39 +2.0
4,100 - EX31_RS21340 0.39 +0.6
4,114 + EX31_RS21340 0.41 +1.9
4,243 + EX31_RS21340 0.67 -0.5
4,245 + EX31_RS21340 0.67 +0.2
4,245 + EX31_RS21340 0.67 +1.5
4,245 + EX31_RS21340 0.67 +0.5
4,246 - EX31_RS21340 0.68 -0.7
4,246 - EX31_RS21340 0.68 -1.0
4,246 - EX31_RS21340 0.68 +0.6
4,268 + EX31_RS21340 0.72 +0.8
4,269 - EX31_RS21340 0.72 +0.7
4,269 - EX31_RS21340 0.72 -1.0
4,271 + EX31_RS21340 0.73 +0.5
4,272 - EX31_RS21340 0.73 -0.3
4,272 - EX31_RS21340 0.73 -1.1
4,435 + +1.1
4,613 + EX31_RS21345 0.17 -1.5
4,613 + EX31_RS21345 0.17 -0.5
4,613 + EX31_RS21345 0.17 -0.1
4,644 + EX31_RS21345 0.21 +0.5
4,644 + EX31_RS21345 0.21 -1.5
4,675 + EX31_RS21345 0.25 +0.4
4,849 - EX31_RS21345 0.48 +0.6
4,878 - EX31_RS21345 0.52 +1.1
4,929 + EX31_RS21345 0.59 +0.9
5,093 - EX31_RS21345 0.81 +0.4
5,149 + EX31_RS21345 0.89 +0.1
5,255 - +0.1
5,375 - -0.2
5,395 + -0.4
5,397 + +0.5

Or see this region's nucleotide sequence