Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18900 and EX31_RS18905 are separated by 65 nucleotides EX31_RS18905 and EX31_RS18910 overlap by 4 nucleotides EX31_RS18910 and EX31_RS18915 are separated by 414 nucleotides
EX31_RS18900: EX31_RS18900 - fasciclin domain-containing protein, at 366,363 to 366,926
_RS18900
EX31_RS18905: EX31_RS18905 - sigma-70 family RNA polymerase sigma factor, at 366,992 to 367,573
_RS18905
EX31_RS18910: EX31_RS18910 - hypothetical protein, at 367,570 to 368,247
_RS18910
EX31_RS18915: EX31_RS18915 - DNA starvation/stationary phase protection protein Dps, at 368,662 to 369,165
_RS18915
Position (kb) 367
368
369 Strain fitness (log2 ratio) -2
-1
0
1
2 at 366.642 kb on - strand, within EX31_RS18900 at 366.690 kb on + strand, within EX31_RS18900 at 366.690 kb on + strand, within EX31_RS18900 at 366.690 kb on + strand, within EX31_RS18900 at 366.691 kb on - strand, within EX31_RS18900 at 366.691 kb on - strand, within EX31_RS18900 at 366.691 kb on - strand, within EX31_RS18900 at 366.711 kb on + strand, within EX31_RS18900 at 366.712 kb on - strand, within EX31_RS18900 at 366.712 kb on - strand, within EX31_RS18900 at 366.860 kb on + strand, within EX31_RS18900 at 366.860 kb on + strand, within EX31_RS18900 at 366.860 kb on + strand, within EX31_RS18900 at 366.860 kb on + strand, within EX31_RS18900 at 366.860 kb on + strand, within EX31_RS18900 at 366.861 kb on - strand, within EX31_RS18900 at 366.861 kb on - strand, within EX31_RS18900 at 366.861 kb on - strand, within EX31_RS18900 at 366.861 kb on - strand, within EX31_RS18900 at 366.861 kb on - strand, within EX31_RS18900 at 366.864 kb on + strand, within EX31_RS18900 at 366.864 kb on + strand, within EX31_RS18900 at 366.864 kb on + strand, within EX31_RS18900 at 366.864 kb on + strand, within EX31_RS18900 at 366.864 kb on + strand, within EX31_RS18900 at 366.864 kb on + strand, within EX31_RS18900 at 366.865 kb on - strand, within EX31_RS18900 at 366.865 kb on - strand, within EX31_RS18900 at 366.865 kb on - strand, within EX31_RS18900 at 366.865 kb on - strand, within EX31_RS18900 at 366.865 kb on - strand, within EX31_RS18900 at 366.924 kb on + strand at 366.924 kb on + strand at 366.925 kb on - strand at 366.934 kb on + strand at 366.936 kb on + strand at 366.957 kb on + strand at 366.957 kb on + strand at 366.957 kb on + strand at 366.957 kb on + strand at 366.958 kb on - strand at 366.976 kb on - strand at 367.042 kb on - strand at 367.098 kb on + strand, within EX31_RS18905 at 367.098 kb on + strand, within EX31_RS18905 at 367.098 kb on + strand, within EX31_RS18905 at 367.098 kb on + strand, within EX31_RS18905 at 367.098 kb on + strand, within EX31_RS18905 at 367.098 kb on + strand, within EX31_RS18905 at 367.098 kb on + strand, within EX31_RS18905 at 367.099 kb on - strand, within EX31_RS18905 at 367.099 kb on - strand, within EX31_RS18905 at 367.099 kb on - strand, within EX31_RS18905 at 367.099 kb on - strand, within EX31_RS18905 at 367.099 kb on - strand, within EX31_RS18905 at 367.100 kb on + strand, within EX31_RS18905 at 367.100 kb on + strand, within EX31_RS18905 at 367.101 kb on - strand, within EX31_RS18905 at 367.101 kb on - strand, within EX31_RS18905 at 367.123 kb on - strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.187 kb on + strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.188 kb on - strand, within EX31_RS18905 at 367.189 kb on + strand, within EX31_RS18905 at 367.190 kb on - strand, within EX31_RS18905 at 367.190 kb on - strand, within EX31_RS18905 at 367.218 kb on - strand, within EX31_RS18905 at 367.220 kb on - strand, within EX31_RS18905 at 367.220 kb on - strand, within EX31_RS18905 at 367.258 kb on + strand, within EX31_RS18905 at 367.259 kb on - strand, within EX31_RS18905 at 367.308 kb on + strand, within EX31_RS18905 at 367.308 kb on + strand, within EX31_RS18905 at 367.309 kb on - strand, within EX31_RS18905 at 367.309 kb on - strand, within EX31_RS18905 at 367.353 kb on - strand, within EX31_RS18905 at 367.353 kb on - strand, within EX31_RS18905 at 367.458 kb on - strand, within EX31_RS18905 at 367.458 kb on - strand, within EX31_RS18905 at 367.460 kb on + strand, within EX31_RS18905 at 367.460 kb on + strand, within EX31_RS18905 at 367.460 kb on + strand, within EX31_RS18905 at 367.461 kb on - strand, within EX31_RS18905 at 367.461 kb on - strand, within EX31_RS18905 at 367.530 kb on + strand at 367.531 kb on - strand at 367.531 kb on - strand at 367.531 kb on - strand at 367.531 kb on - strand at 367.551 kb on + strand at 367.551 kb on + strand at 367.551 kb on + strand at 367.551 kb on + strand at 367.551 kb on + strand at 367.552 kb on - strand at 367.552 kb on - strand at 367.552 kb on - strand at 367.552 kb on - strand at 367.552 kb on - strand at 367.563 kb on + strand at 367.564 kb on - strand at 367.569 kb on + strand at 367.569 kb on + strand at 367.782 kb on + strand, within EX31_RS18910 at 367.782 kb on + strand, within EX31_RS18910 at 367.805 kb on + strand, within EX31_RS18910 at 367.806 kb on - strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.841 kb on - strand, within EX31_RS18910 at 367.841 kb on - strand, within EX31_RS18910 at 367.841 kb on - strand, within EX31_RS18910 at 367.841 kb on - strand, within EX31_RS18910 at 367.841 kb on - strand, within EX31_RS18910 at 367.841 kb on - strand, within EX31_RS18910 at 367.842 kb on + strand, within EX31_RS18910 at 367.842 kb on + strand, within EX31_RS18910 at 367.843 kb on - strand, within EX31_RS18910 at 367.843 kb on - strand, within EX31_RS18910 at 367.843 kb on - strand, within EX31_RS18910 at 367.843 kb on - strand, within EX31_RS18910 at 368.157 kb on + strand, within EX31_RS18910 at 368.158 kb on - strand, within EX31_RS18910 at 368.169 kb on - strand, within EX31_RS18910 at 368.224 kb on + strand at 368.224 kb on + strand at 368.225 kb on - strand at 368.225 kb on - strand at 368.292 kb on + strand at 368.292 kb on + strand at 368.303 kb on + strand at 368.304 kb on - strand at 368.304 kb on - strand at 368.388 kb on - strand at 368.388 kb on - strand at 368.388 kb on - strand at 368.388 kb on - strand at 368.399 kb on + strand at 368.426 kb on + strand at 368.435 kb on + strand at 368.435 kb on + strand at 368.494 kb on - strand at 368.507 kb on - strand at 368.507 kb on - strand at 368.507 kb on - strand at 368.535 kb on + strand at 368.537 kb on + strand at 368.537 kb on + strand at 368.538 kb on - strand at 368.590 kb on + strand at 368.597 kb on - strand at 368.611 kb on + strand at 368.619 kb on - strand at 368.623 kb on + strand at 368.623 kb on + strand at 368.655 kb on + strand at 368.655 kb on + strand at 368.655 kb on + strand at 368.655 kb on + strand at 368.656 kb on - strand at 368.659 kb on + strand at 368.659 kb on + strand at 368.659 kb on + strand at 368.659 kb on + strand at 368.659 kb on + strand at 368.659 kb on + strand at 368.660 kb on - strand at 368.660 kb on - strand at 368.660 kb on - strand at 368.661 kb on + strand at 368.662 kb on - strand at 368.708 kb on - strand at 368.708 kb on - strand at 368.723 kb on + strand, within EX31_RS18915 at 368.745 kb on + strand, within EX31_RS18915 at 368.748 kb on + strand, within EX31_RS18915 at 368.748 kb on + strand, within EX31_RS18915 at 368.748 kb on + strand, within EX31_RS18915 at 368.748 kb on + strand, within EX31_RS18915 at 368.749 kb on - strand, within EX31_RS18915 at 368.779 kb on + strand, within EX31_RS18915 at 368.779 kb on + strand, within EX31_RS18915 at 368.839 kb on - strand, within EX31_RS18915 at 368.921 kb on + strand, within EX31_RS18915 at 368.921 kb on + strand, within EX31_RS18915 at 368.921 kb on + strand, within EX31_RS18915 at 368.922 kb on - strand, within EX31_RS18915 at 368.922 kb on - strand, within EX31_RS18915 at 368.922 kb on - strand, within EX31_RS18915 at 368.962 kb on - strand, within EX31_RS18915 at 369.034 kb on + strand, within EX31_RS18915 at 369.035 kb on - strand, within EX31_RS18915 at 369.078 kb on - strand, within EX31_RS18915 at 369.099 kb on + strand, within EX31_RS18915 at 369.156 kb on + strand at 369.156 kb on + strand at 369.157 kb on - strand at 369.164 kb on - strand at 369.190 kb on + strand at 369.190 kb on + strand at 369.191 kb on - strand at 369.211 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 366,642 - EX31_RS18900 0.49 +0.3 366,690 + EX31_RS18900 0.58 +0.9 366,690 + EX31_RS18900 0.58 +0.8 366,690 + EX31_RS18900 0.58 +0.1 366,691 - EX31_RS18900 0.58 +0.3 366,691 - EX31_RS18900 0.58 +0.5 366,691 - EX31_RS18900 0.58 +0.1 366,711 + EX31_RS18900 0.62 -2.4 366,712 - EX31_RS18900 0.62 +0.3 366,712 - EX31_RS18900 0.62 -1.7 366,860 + EX31_RS18900 0.88 +1.0 366,860 + EX31_RS18900 0.88 +0.2 366,860 + EX31_RS18900 0.88 -2.0 366,860 + EX31_RS18900 0.88 -0.4 366,860 + EX31_RS18900 0.88 -1.1 366,861 - EX31_RS18900 0.88 -0.9 366,861 - EX31_RS18900 0.88 +0.5 366,861 - EX31_RS18900 0.88 +0.8 366,861 - EX31_RS18900 0.88 -0.2 366,861 - EX31_RS18900 0.88 +0.1 366,864 + EX31_RS18900 0.89 +0.8 366,864 + EX31_RS18900 0.89 +0.4 366,864 + EX31_RS18900 0.89 -0.5 366,864 + EX31_RS18900 0.89 +0.6 366,864 + EX31_RS18900 0.89 -0.2 366,864 + EX31_RS18900 0.89 +0.0 366,865 - EX31_RS18900 0.89 +1.1 366,865 - EX31_RS18900 0.89 -1.3 366,865 - EX31_RS18900 0.89 -2.1 366,865 - EX31_RS18900 0.89 -1.0 366,865 - EX31_RS18900 0.89 +1.4 366,924 + -0.7 366,924 + +0.2 366,925 - -0.1 366,934 + +0.2 366,936 + +0.2 366,957 + -0.0 366,957 + +0.8 366,957 + +0.6 366,957 + -0.5 366,958 - -0.0 366,976 - +0.6 367,042 - -0.5 367,098 + EX31_RS18905 0.18 -0.2 367,098 + EX31_RS18905 0.18 -0.9 367,098 + EX31_RS18905 0.18 +0.5 367,098 + EX31_RS18905 0.18 +1.8 367,098 + EX31_RS18905 0.18 +0.0 367,098 + EX31_RS18905 0.18 -0.2 367,098 + EX31_RS18905 0.18 +0.5 367,099 - EX31_RS18905 0.18 +0.1 367,099 - EX31_RS18905 0.18 -1.7 367,099 - EX31_RS18905 0.18 +0.8 367,099 - EX31_RS18905 0.18 +0.7 367,099 - EX31_RS18905 0.18 -0.6 367,100 + EX31_RS18905 0.19 -0.3 367,100 + EX31_RS18905 0.19 -0.4 367,101 - EX31_RS18905 0.19 +0.5 367,101 - EX31_RS18905 0.19 -1.8 367,123 - EX31_RS18905 0.23 -0.4 367,187 + EX31_RS18905 0.34 -1.3 367,187 + EX31_RS18905 0.34 -0.6 367,187 + EX31_RS18905 0.34 +0.7 367,187 + EX31_RS18905 0.34 -0.8 367,187 + EX31_RS18905 0.34 -0.4 367,187 + EX31_RS18905 0.34 +0.5 367,187 + EX31_RS18905 0.34 +0.0 367,187 + EX31_RS18905 0.34 -1.3 367,187 + EX31_RS18905 0.34 +0.8 367,187 + EX31_RS18905 0.34 -0.7 367,187 + EX31_RS18905 0.34 +0.7 367,187 + EX31_RS18905 0.34 -1.7 367,187 + EX31_RS18905 0.34 +0.0 367,187 + EX31_RS18905 0.34 +0.4 367,187 + EX31_RS18905 0.34 -1.6 367,187 + EX31_RS18905 0.34 -0.4 367,187 + EX31_RS18905 0.34 -0.2 367,187 + EX31_RS18905 0.34 -0.9 367,187 + EX31_RS18905 0.34 +0.4 367,188 - EX31_RS18905 0.34 +0.5 367,188 - EX31_RS18905 0.34 +0.4 367,188 - EX31_RS18905 0.34 +0.6 367,188 - EX31_RS18905 0.34 +0.5 367,188 - EX31_RS18905 0.34 +1.0 367,188 - EX31_RS18905 0.34 +0.4 367,188 - EX31_RS18905 0.34 -1.4 367,188 - EX31_RS18905 0.34 +0.3 367,188 - EX31_RS18905 0.34 -0.0 367,188 - EX31_RS18905 0.34 -0.4 367,188 - EX31_RS18905 0.34 +0.6 367,188 - EX31_RS18905 0.34 -0.3 367,188 - EX31_RS18905 0.34 +1.0 367,188 - EX31_RS18905 0.34 +0.7 367,188 - EX31_RS18905 0.34 -0.2 367,188 - EX31_RS18905 0.34 +0.4 367,189 + EX31_RS18905 0.34 +0.6 367,190 - EX31_RS18905 0.34 +0.2 367,190 - EX31_RS18905 0.34 -1.8 367,218 - EX31_RS18905 0.39 -0.2 367,220 - EX31_RS18905 0.39 +1.6 367,220 - EX31_RS18905 0.39 -0.9 367,258 + EX31_RS18905 0.46 -1.1 367,259 - EX31_RS18905 0.46 -1.2 367,308 + EX31_RS18905 0.54 -0.4 367,308 + EX31_RS18905 0.54 -0.4 367,309 - EX31_RS18905 0.54 +0.5 367,309 - EX31_RS18905 0.54 -0.9 367,353 - EX31_RS18905 0.62 +0.9 367,353 - EX31_RS18905 0.62 +0.2 367,458 - EX31_RS18905 0.80 +1.4 367,458 - EX31_RS18905 0.80 -0.1 367,460 + EX31_RS18905 0.80 -0.7 367,460 + EX31_RS18905 0.80 -0.0 367,460 + EX31_RS18905 0.80 -0.1 367,461 - EX31_RS18905 0.81 -0.0 367,461 - EX31_RS18905 0.81 +0.4 367,530 + +0.2 367,531 - -0.3 367,531 - -0.5 367,531 - +1.0 367,531 - -2.4 367,551 + -0.3 367,551 + -1.3 367,551 + +1.0 367,551 + +0.1 367,551 + -0.7 367,552 - +0.4 367,552 - -0.1 367,552 - -0.2 367,552 - +0.1 367,552 - +0.0 367,563 + +0.1 367,564 - -0.2 367,569 + +1.1 367,569 + +0.4 367,782 + EX31_RS18910 0.31 +0.5 367,782 + EX31_RS18910 0.31 -1.1 367,805 + EX31_RS18910 0.35 +0.0 367,806 - EX31_RS18910 0.35 +0.3 367,840 + EX31_RS18910 0.40 +0.6 367,840 + EX31_RS18910 0.40 +0.3 367,840 + EX31_RS18910 0.40 -0.0 367,840 + EX31_RS18910 0.40 -0.1 367,840 + EX31_RS18910 0.40 +0.4 367,840 + EX31_RS18910 0.40 +0.4 367,840 + EX31_RS18910 0.40 -0.4 367,840 + EX31_RS18910 0.40 +1.5 367,840 + EX31_RS18910 0.40 -1.8 367,840 + EX31_RS18910 0.40 -2.1 367,840 + EX31_RS18910 0.40 +0.7 367,840 + EX31_RS18910 0.40 +1.5 367,841 - EX31_RS18910 0.40 +0.7 367,841 - EX31_RS18910 0.40 +0.4 367,841 - EX31_RS18910 0.40 -1.5 367,841 - EX31_RS18910 0.40 +0.8 367,841 - EX31_RS18910 0.40 +0.4 367,841 - EX31_RS18910 0.40 -0.1 367,842 + EX31_RS18910 0.40 +0.6 367,842 + EX31_RS18910 0.40 +0.3 367,843 - EX31_RS18910 0.40 +1.1 367,843 - EX31_RS18910 0.40 -0.1 367,843 - EX31_RS18910 0.40 +0.2 367,843 - EX31_RS18910 0.40 +0.4 368,157 + EX31_RS18910 0.87 +1.1 368,158 - EX31_RS18910 0.87 +0.3 368,169 - EX31_RS18910 0.88 +1.9 368,224 + -0.1 368,224 + +0.7 368,225 - -0.2 368,225 - -0.2 368,292 + +0.1 368,292 + +0.8 368,303 + +0.5 368,304 - +0.1 368,304 - +0.4 368,388 - +0.2 368,388 - -0.1 368,388 - -0.2 368,388 - -0.4 368,399 + -1.1 368,426 + +0.1 368,435 + -0.7 368,435 + -0.8 368,494 - +0.6 368,507 - -0.6 368,507 - -0.1 368,507 - +0.7 368,535 + +0.5 368,537 + +1.1 368,537 + +0.1 368,538 - +0.3 368,590 + +0.0 368,597 - +0.4 368,611 + -0.3 368,619 - +0.9 368,623 + +0.4 368,623 + +0.8 368,655 + -1.0 368,655 + -0.3 368,655 + -0.8 368,655 + -0.5 368,656 - +0.7 368,659 + -2.6 368,659 + -0.0 368,659 + +0.7 368,659 + -0.7 368,659 + -0.2 368,659 + -0.6 368,660 - -1.0 368,660 - +0.1 368,660 - -0.0 368,661 + +0.3 368,662 - -0.2 368,708 - +0.5 368,708 - +0.4 368,723 + EX31_RS18915 0.12 -1.0 368,745 + EX31_RS18915 0.16 +0.3 368,748 + EX31_RS18915 0.17 -0.8 368,748 + EX31_RS18915 0.17 -0.0 368,748 + EX31_RS18915 0.17 +0.3 368,748 + EX31_RS18915 0.17 -0.1 368,749 - EX31_RS18915 0.17 -0.5 368,779 + EX31_RS18915 0.23 +0.3 368,779 + EX31_RS18915 0.23 -1.1 368,839 - EX31_RS18915 0.35 -0.5 368,921 + EX31_RS18915 0.51 +0.4 368,921 + EX31_RS18915 0.51 +1.1 368,921 + EX31_RS18915 0.51 +0.5 368,922 - EX31_RS18915 0.52 +0.9 368,922 - EX31_RS18915 0.52 -1.1 368,922 - EX31_RS18915 0.52 +0.3 368,962 - EX31_RS18915 0.60 +0.1 369,034 + EX31_RS18915 0.74 -0.1 369,035 - EX31_RS18915 0.74 +0.9 369,078 - EX31_RS18915 0.83 -0.8 369,099 + EX31_RS18915 0.87 -1.6 369,156 + +0.5 369,156 + -0.9 369,157 - -0.5 369,164 - +0.7 369,190 + +1.1 369,190 + +0.9 369,191 - -0.2 369,211 + +2.7
Or see this region's nucleotide sequence