Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18670 and EX31_RS18675 are separated by 136 nucleotides EX31_RS18675 and EX31_RS18680 are separated by 18 nucleotides
EX31_RS18670: EX31_RS18670 - outer membrane permeability protein SanA, at 313,056 to 313,979
_RS18670
EX31_RS18675: EX31_RS18675 - galactose/methyl galactoside ABC transporter permease MglC, at 314,116 to 315,126
_RS18675
EX31_RS18680: EX31_RS18680 - galactose/methyl galactoside ABC transporter ATP-binding protein MglA, at 315,145 to 316,677
_RS18680
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 313.116 kb on - strand at 313.116 kb on - strand at 313.135 kb on + strand at 313.141 kb on + strand at 313.141 kb on + strand at 313.141 kb on + strand at 313.141 kb on + strand at 313.141 kb on + strand at 313.141 kb on + strand at 313.141 kb on + strand at 313.141 kb on + strand at 313.142 kb on - strand at 313.142 kb on - strand at 313.142 kb on - strand at 313.142 kb on - strand at 313.142 kb on - strand at 313.161 kb on + strand, within EX31_RS18670 at 313.162 kb on - strand, within EX31_RS18670 at 313.172 kb on - strand, within EX31_RS18670 at 313.221 kb on + strand, within EX31_RS18670 at 313.221 kb on + strand, within EX31_RS18670 at 313.222 kb on - strand, within EX31_RS18670 at 313.222 kb on - strand, within EX31_RS18670 at 313.222 kb on - strand, within EX31_RS18670 at 313.222 kb on - strand, within EX31_RS18670 at 313.248 kb on + strand, within EX31_RS18670 at 313.248 kb on + strand, within EX31_RS18670 at 313.249 kb on - strand, within EX31_RS18670 at 313.251 kb on + strand, within EX31_RS18670 at 313.251 kb on + strand, within EX31_RS18670 at 313.251 kb on + strand, within EX31_RS18670 at 313.284 kb on + strand, within EX31_RS18670 at 313.284 kb on + strand, within EX31_RS18670 at 313.300 kb on + strand, within EX31_RS18670 at 313.305 kb on + strand, within EX31_RS18670 at 313.305 kb on + strand, within EX31_RS18670 at 313.306 kb on - strand, within EX31_RS18670 at 313.341 kb on + strand, within EX31_RS18670 at 313.342 kb on - strand, within EX31_RS18670 at 313.343 kb on + strand, within EX31_RS18670 at 313.344 kb on - strand, within EX31_RS18670 at 313.344 kb on - strand, within EX31_RS18670 at 313.485 kb on - strand, within EX31_RS18670 at 313.578 kb on - strand, within EX31_RS18670 at 313.636 kb on - strand, within EX31_RS18670 at 313.636 kb on - strand, within EX31_RS18670 at 313.636 kb on - strand, within EX31_RS18670 at 313.644 kb on - strand, within EX31_RS18670 at 313.679 kb on + strand, within EX31_RS18670 at 313.753 kb on + strand, within EX31_RS18670 at 313.753 kb on + strand, within EX31_RS18670 at 313.753 kb on + strand, within EX31_RS18670 at 313.754 kb on - strand, within EX31_RS18670 at 314.019 kb on + strand at 314.063 kb on + strand at 314.084 kb on + strand at 314.085 kb on - strand at 314.117 kb on + strand at 314.117 kb on + strand at 314.132 kb on + strand at 314.133 kb on - strand at 314.182 kb on - strand at 314.187 kb on - strand at 314.187 kb on - strand at 314.187 kb on - strand at 314.196 kb on - strand at 314.213 kb on + strand at 314.213 kb on + strand at 314.213 kb on + strand at 314.214 kb on - strand at 314.214 kb on - strand at 314.336 kb on + strand, within EX31_RS18675 at 314.336 kb on + strand, within EX31_RS18675 at 314.336 kb on + strand, within EX31_RS18675 at 314.336 kb on + strand, within EX31_RS18675 at 314.337 kb on - strand, within EX31_RS18675 at 314.337 kb on - strand, within EX31_RS18675 at 314.337 kb on - strand, within EX31_RS18675 at 314.337 kb on - strand, within EX31_RS18675 at 314.337 kb on - strand, within EX31_RS18675 at 314.340 kb on + strand, within EX31_RS18675 at 314.340 kb on + strand, within EX31_RS18675 at 314.341 kb on - strand, within EX31_RS18675 at 314.341 kb on - strand, within EX31_RS18675 at 314.341 kb on - strand, within EX31_RS18675 at 314.341 kb on - strand, within EX31_RS18675 at 314.341 kb on - strand, within EX31_RS18675 at 314.341 kb on - strand, within EX31_RS18675 at 314.402 kb on + strand, within EX31_RS18675 at 314.402 kb on + strand, within EX31_RS18675 at 314.403 kb on - strand, within EX31_RS18675 at 314.423 kb on + strand, within EX31_RS18675 at 314.424 kb on - strand, within EX31_RS18675 at 314.424 kb on - strand, within EX31_RS18675 at 314.562 kb on - strand, within EX31_RS18675 at 314.562 kb on - strand, within EX31_RS18675 at 314.569 kb on - strand, within EX31_RS18675 at 314.569 kb on - strand, within EX31_RS18675 at 314.573 kb on + strand, within EX31_RS18675 at 314.573 kb on + strand, within EX31_RS18675 at 314.573 kb on + strand, within EX31_RS18675 at 314.574 kb on - strand, within EX31_RS18675 at 314.574 kb on - strand, within EX31_RS18675 at 314.574 kb on - strand, within EX31_RS18675 at 314.574 kb on - strand, within EX31_RS18675 at 314.574 kb on - strand, within EX31_RS18675 at 314.663 kb on + strand, within EX31_RS18675 at 314.670 kb on - strand, within EX31_RS18675 at 314.741 kb on + strand, within EX31_RS18675 at 314.751 kb on + strand, within EX31_RS18675 at 314.752 kb on - strand, within EX31_RS18675 at 314.752 kb on - strand, within EX31_RS18675 at 314.752 kb on - strand, within EX31_RS18675 at 314.754 kb on + strand, within EX31_RS18675 at 314.774 kb on - strand, within EX31_RS18675 at 314.787 kb on + strand, within EX31_RS18675 at 314.788 kb on - strand, within EX31_RS18675 at 314.968 kb on - strand, within EX31_RS18675 at 314.997 kb on + strand, within EX31_RS18675 at 314.998 kb on - strand, within EX31_RS18675 at 315.001 kb on + strand, within EX31_RS18675 at 315.001 kb on + strand, within EX31_RS18675 at 315.002 kb on - strand, within EX31_RS18675 at 315.089 kb on - strand at 315.130 kb on - strand at 315.173 kb on - strand at 315.283 kb on - strand at 315.323 kb on - strand, within EX31_RS18680 at 315.330 kb on - strand, within EX31_RS18680 at 315.385 kb on + strand, within EX31_RS18680 at 315.465 kb on + strand, within EX31_RS18680 at 315.466 kb on - strand, within EX31_RS18680 at 315.550 kb on - strand, within EX31_RS18680 at 315.555 kb on + strand, within EX31_RS18680 at 315.602 kb on + strand, within EX31_RS18680 at 315.608 kb on + strand, within EX31_RS18680 at 315.608 kb on + strand, within EX31_RS18680 at 315.608 kb on + strand, within EX31_RS18680 at 315.608 kb on + strand, within EX31_RS18680 at 315.681 kb on + strand, within EX31_RS18680 at 315.701 kb on - strand, within EX31_RS18680 at 315.753 kb on + strand, within EX31_RS18680 at 315.759 kb on + strand, within EX31_RS18680 at 315.982 kb on - strand, within EX31_RS18680 at 315.982 kb on - strand, within EX31_RS18680 at 316.045 kb on - strand, within EX31_RS18680 at 316.053 kb on + strand, within EX31_RS18680 at 316.054 kb on - strand, within EX31_RS18680 at 316.054 kb on - strand, within EX31_RS18680 at 316.055 kb on + strand, within EX31_RS18680 at 316.055 kb on + strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.087 kb on - strand, within EX31_RS18680
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 313,116 - +1.7 313,116 - +0.9 313,135 + +1.6 313,141 + +0.6 313,141 + +1.2 313,141 + +0.4 313,141 + -0.4 313,141 + +0.5 313,141 + +0.6 313,141 + -2.3 313,141 + +1.4 313,142 - -1.5 313,142 - +2.0 313,142 - +0.2 313,142 - +1.4 313,142 - -0.1 313,161 + EX31_RS18670 0.11 +0.1 313,162 - EX31_RS18670 0.11 +1.5 313,172 - EX31_RS18670 0.13 +0.1 313,221 + EX31_RS18670 0.18 -0.1 313,221 + EX31_RS18670 0.18 -0.5 313,222 - EX31_RS18670 0.18 -0.5 313,222 - EX31_RS18670 0.18 +0.8 313,222 - EX31_RS18670 0.18 -0.0 313,222 - EX31_RS18670 0.18 +0.5 313,248 + EX31_RS18670 0.21 +1.5 313,248 + EX31_RS18670 0.21 +1.1 313,249 - EX31_RS18670 0.21 +2.5 313,251 + EX31_RS18670 0.21 -0.7 313,251 + EX31_RS18670 0.21 +0.3 313,251 + EX31_RS18670 0.21 +1.0 313,284 + EX31_RS18670 0.25 +1.2 313,284 + EX31_RS18670 0.25 +1.3 313,300 + EX31_RS18670 0.26 +0.8 313,305 + EX31_RS18670 0.27 +0.8 313,305 + EX31_RS18670 0.27 +1.5 313,306 - EX31_RS18670 0.27 +1.7 313,341 + EX31_RS18670 0.31 +2.1 313,342 - EX31_RS18670 0.31 -2.0 313,343 + EX31_RS18670 0.31 +0.5 313,344 - EX31_RS18670 0.31 +0.8 313,344 - EX31_RS18670 0.31 +1.2 313,485 - EX31_RS18670 0.46 -0.0 313,578 - EX31_RS18670 0.56 +1.1 313,636 - EX31_RS18670 0.63 +0.5 313,636 - EX31_RS18670 0.63 +1.1 313,636 - EX31_RS18670 0.63 -0.7 313,644 - EX31_RS18670 0.64 +0.1 313,679 + EX31_RS18670 0.67 +0.6 313,753 + EX31_RS18670 0.75 +0.5 313,753 + EX31_RS18670 0.75 +0.8 313,753 + EX31_RS18670 0.75 +0.0 313,754 - EX31_RS18670 0.76 +0.2 314,019 + -0.4 314,063 + +0.1 314,084 + -2.0 314,085 - +0.0 314,117 + -0.5 314,117 + +1.9 314,132 + +0.1 314,133 - -1.2 314,182 - -0.2 314,187 - +0.7 314,187 - -0.9 314,187 - -1.5 314,196 - +0.2 314,213 + -2.1 314,213 + -0.2 314,213 + +0.0 314,214 - -1.7 314,214 - +0.8 314,336 + EX31_RS18675 0.22 -0.9 314,336 + EX31_RS18675 0.22 -0.2 314,336 + EX31_RS18675 0.22 -3.1 314,336 + EX31_RS18675 0.22 +0.6 314,337 - EX31_RS18675 0.22 -1.8 314,337 - EX31_RS18675 0.22 -0.6 314,337 - EX31_RS18675 0.22 +1.5 314,337 - EX31_RS18675 0.22 -0.5 314,337 - EX31_RS18675 0.22 -2.5 314,340 + EX31_RS18675 0.22 +0.2 314,340 + EX31_RS18675 0.22 -0.5 314,341 - EX31_RS18675 0.22 -1.9 314,341 - EX31_RS18675 0.22 +0.1 314,341 - EX31_RS18675 0.22 -0.2 314,341 - EX31_RS18675 0.22 +0.0 314,341 - EX31_RS18675 0.22 -0.7 314,341 - EX31_RS18675 0.22 +0.1 314,402 + EX31_RS18675 0.28 -2.1 314,402 + EX31_RS18675 0.28 +1.1 314,403 - EX31_RS18675 0.28 +1.3 314,423 + EX31_RS18675 0.30 +0.6 314,424 - EX31_RS18675 0.30 -0.3 314,424 - EX31_RS18675 0.30 +0.5 314,562 - EX31_RS18675 0.44 -0.6 314,562 - EX31_RS18675 0.44 +0.5 314,569 - EX31_RS18675 0.45 -1.0 314,569 - EX31_RS18675 0.45 -0.6 314,573 + EX31_RS18675 0.45 +2.7 314,573 + EX31_RS18675 0.45 -1.0 314,573 + EX31_RS18675 0.45 -0.4 314,574 - EX31_RS18675 0.45 -1.3 314,574 - EX31_RS18675 0.45 +1.6 314,574 - EX31_RS18675 0.45 +0.4 314,574 - EX31_RS18675 0.45 -0.2 314,574 - EX31_RS18675 0.45 -0.1 314,663 + EX31_RS18675 0.54 -1.7 314,670 - EX31_RS18675 0.55 +0.5 314,741 + EX31_RS18675 0.62 +0.3 314,751 + EX31_RS18675 0.63 -0.3 314,752 - EX31_RS18675 0.63 -1.6 314,752 - EX31_RS18675 0.63 -1.2 314,752 - EX31_RS18675 0.63 -0.1 314,754 + EX31_RS18675 0.63 +3.0 314,774 - EX31_RS18675 0.65 +0.9 314,787 + EX31_RS18675 0.66 +1.2 314,788 - EX31_RS18675 0.66 -0.0 314,968 - EX31_RS18675 0.84 +0.4 314,997 + EX31_RS18675 0.87 -0.6 314,998 - EX31_RS18675 0.87 +0.3 315,001 + EX31_RS18675 0.88 -1.3 315,001 + EX31_RS18675 0.88 +0.2 315,002 - EX31_RS18675 0.88 +0.7 315,089 - +0.6 315,130 - +0.7 315,173 - -0.6 315,283 - +1.1 315,323 - EX31_RS18680 0.12 -0.5 315,330 - EX31_RS18680 0.12 -0.3 315,385 + EX31_RS18680 0.16 -1.0 315,465 + EX31_RS18680 0.21 +0.0 315,466 - EX31_RS18680 0.21 -2.4 315,550 - EX31_RS18680 0.26 -0.4 315,555 + EX31_RS18680 0.27 -0.9 315,602 + EX31_RS18680 0.30 +0.0 315,608 + EX31_RS18680 0.30 -2.1 315,608 + EX31_RS18680 0.30 +0.2 315,608 + EX31_RS18680 0.30 +0.5 315,608 + EX31_RS18680 0.30 +0.0 315,681 + EX31_RS18680 0.35 +0.5 315,701 - EX31_RS18680 0.36 -1.2 315,753 + EX31_RS18680 0.40 -0.2 315,759 + EX31_RS18680 0.40 -0.8 315,982 - EX31_RS18680 0.55 -1.0 315,982 - EX31_RS18680 0.55 -0.3 316,045 - EX31_RS18680 0.59 -0.0 316,053 + EX31_RS18680 0.59 +0.8 316,054 - EX31_RS18680 0.59 +0.2 316,054 - EX31_RS18680 0.59 -1.2 316,055 + EX31_RS18680 0.59 +1.1 316,055 + EX31_RS18680 0.59 +0.6 316,056 - EX31_RS18680 0.59 -1.5 316,056 - EX31_RS18680 0.59 -0.7 316,056 - EX31_RS18680 0.59 -1.6 316,056 - EX31_RS18680 0.59 +0.5 316,056 - EX31_RS18680 0.59 -0.3 316,056 - EX31_RS18680 0.59 +0.4 316,056 - EX31_RS18680 0.59 -0.1 316,087 - EX31_RS18680 0.61 +2.3
Or see this region's nucleotide sequence