Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15605 and EX31_RS15610 overlap by 4 nucleotides EX31_RS15610 and EX31_RS15615 overlap by 4 nucleotides EX31_RS15615 and EX31_RS15620 are separated by 10 nucleotides
EX31_RS15605: EX31_RS15605 - ABC transporter ATP-binding protein, at 18,153 to 18,869
_RS15605
EX31_RS15610: EX31_RS15610 - ATP-binding cassette domain-containing protein, at 18,866 to 19,759
_RS15610
EX31_RS15615: EX31_RS15615 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 19,756 to 21,045
_RS15615
EX31_RS15620: EX31_RS15620 - branched-chain amino acid ABC transporter permease, at 21,056 to 21,970
_RS15620
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.808 kb on - strand at 18.808 kb on - strand at 18.827 kb on - strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.830 kb on - strand at 18.830 kb on - strand at 18.869 kb on + strand at 18.869 kb on + strand at 18.869 kb on + strand at 19.015 kb on + strand, within EX31_RS15610 at 19.016 kb on - strand, within EX31_RS15610 at 19.084 kb on + strand, within EX31_RS15610 at 19.085 kb on - strand, within EX31_RS15610 at 19.148 kb on - strand, within EX31_RS15610 at 19.189 kb on - strand, within EX31_RS15610 at 19.297 kb on + strand, within EX31_RS15610 at 19.436 kb on - strand, within EX31_RS15610 at 19.459 kb on + strand, within EX31_RS15610 at 19.460 kb on - strand, within EX31_RS15610 at 19.526 kb on + strand, within EX31_RS15610 at 19.526 kb on + strand, within EX31_RS15610 at 19.526 kb on + strand, within EX31_RS15610 at 19.526 kb on + strand, within EX31_RS15610 at 19.527 kb on - strand, within EX31_RS15610 at 19.527 kb on - strand, within EX31_RS15610 at 19.527 kb on - strand, within EX31_RS15610 at 19.527 kb on - strand, within EX31_RS15610 at 19.527 kb on - strand, within EX31_RS15610 at 19.527 kb on - strand, within EX31_RS15610 at 19.562 kb on - strand, within EX31_RS15610 at 19.582 kb on - strand, within EX31_RS15610 at 19.600 kb on + strand, within EX31_RS15610 at 19.601 kb on - strand, within EX31_RS15610 at 19.601 kb on - strand, within EX31_RS15610 at 19.690 kb on + strand at 19.773 kb on + strand at 19.844 kb on - strand at 19.862 kb on - strand at 20.024 kb on + strand, within EX31_RS15615 at 20.024 kb on + strand, within EX31_RS15615 at 20.024 kb on + strand, within EX31_RS15615 at 20.025 kb on - strand, within EX31_RS15615 at 20.229 kb on - strand, within EX31_RS15615 at 20.258 kb on + strand, within EX31_RS15615 at 20.259 kb on + strand, within EX31_RS15615 at 20.259 kb on - strand, within EX31_RS15615 at 20.439 kb on - strand, within EX31_RS15615 at 20.452 kb on - strand, within EX31_RS15615 at 20.541 kb on - strand, within EX31_RS15615 at 20.541 kb on - strand, within EX31_RS15615 at 20.564 kb on + strand, within EX31_RS15615 at 20.629 kb on - strand, within EX31_RS15615 at 20.654 kb on + strand, within EX31_RS15615 at 20.654 kb on + strand, within EX31_RS15615 at 20.654 kb on + strand, within EX31_RS15615 at 20.655 kb on - strand, within EX31_RS15615 at 20.687 kb on + strand, within EX31_RS15615 at 20.688 kb on - strand, within EX31_RS15615 at 20.760 kb on + strand, within EX31_RS15615 at 20.761 kb on - strand, within EX31_RS15615 at 20.780 kb on + strand, within EX31_RS15615 at 20.781 kb on - strand, within EX31_RS15615 at 20.914 kb on - strand, within EX31_RS15615 at 20.921 kb on + strand at 20.922 kb on - strand at 21.049 kb on - strand at 21.049 kb on - strand at 21.148 kb on - strand, within EX31_RS15620 at 21.254 kb on - strand, within EX31_RS15620 at 21.303 kb on + strand, within EX31_RS15620 at 21.370 kb on + strand, within EX31_RS15620 at 21.371 kb on - strand, within EX31_RS15620 at 21.385 kb on + strand, within EX31_RS15620 at 21.386 kb on - strand, within EX31_RS15620 at 21.386 kb on - strand, within EX31_RS15620 at 21.436 kb on + strand, within EX31_RS15620 at 21.437 kb on - strand, within EX31_RS15620 at 21.437 kb on - strand, within EX31_RS15620 at 21.437 kb on - strand, within EX31_RS15620 at 21.437 kb on - strand, within EX31_RS15620 at 21.454 kb on + strand, within EX31_RS15620 at 21.461 kb on - strand, within EX31_RS15620 at 21.519 kb on + strand, within EX31_RS15620 at 21.519 kb on + strand, within EX31_RS15620 at 21.520 kb on - strand, within EX31_RS15620 at 21.631 kb on + strand, within EX31_RS15620 at 21.632 kb on - strand, within EX31_RS15620 at 21.691 kb on + strand, within EX31_RS15620 at 21.691 kb on + strand, within EX31_RS15620 at 21.694 kb on - strand, within EX31_RS15620 at 21.694 kb on - strand, within EX31_RS15620 at 21.721 kb on - strand, within EX31_RS15620 at 21.721 kb on - strand, within EX31_RS15620 at 21.826 kb on - strand, within EX31_RS15620 at 21.838 kb on + strand, within EX31_RS15620 at 21.839 kb on - strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.841 kb on - strand, within EX31_RS15620 at 21.841 kb on - strand, within EX31_RS15620 at 21.894 kb on + strand at 21.894 kb on + strand at 21.894 kb on + strand at 21.915 kb on + strand at 21.915 kb on + strand at 21.940 kb on + strand at 21.940 kb on + strand at 21.941 kb on - strand at 21.941 kb on - strand at 21.974 kb on + strand at 21.974 kb on + strand at 21.974 kb on + strand at 21.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 18,808 - -1.1 18,808 - -0.7 18,827 - +0.5 18,829 + +0.0 18,829 + -2.3 18,830 - +0.2 18,830 - +1.1 18,869 + +0.8 18,869 + +0.7 18,869 + +0.1 19,015 + EX31_RS15610 0.17 +0.2 19,016 - EX31_RS15610 0.17 +0.2 19,084 + EX31_RS15610 0.24 +0.3 19,085 - EX31_RS15610 0.24 -0.9 19,148 - EX31_RS15610 0.32 -0.7 19,189 - EX31_RS15610 0.36 +0.3 19,297 + EX31_RS15610 0.48 +0.5 19,436 - EX31_RS15610 0.64 -1.2 19,459 + EX31_RS15610 0.66 +0.3 19,460 - EX31_RS15610 0.66 +2.4 19,526 + EX31_RS15610 0.74 +1.5 19,526 + EX31_RS15610 0.74 -0.7 19,526 + EX31_RS15610 0.74 -3.2 19,526 + EX31_RS15610 0.74 +0.5 19,527 - EX31_RS15610 0.74 -0.9 19,527 - EX31_RS15610 0.74 -0.5 19,527 - EX31_RS15610 0.74 +0.3 19,527 - EX31_RS15610 0.74 +0.2 19,527 - EX31_RS15610 0.74 +0.2 19,527 - EX31_RS15610 0.74 -1.6 19,562 - EX31_RS15610 0.78 +1.3 19,582 - EX31_RS15610 0.80 +0.7 19,600 + EX31_RS15610 0.82 -0.5 19,601 - EX31_RS15610 0.82 +1.0 19,601 - EX31_RS15610 0.82 +0.9 19,690 + +0.5 19,773 + -0.3 19,844 - +0.3 19,862 - -0.3 20,024 + EX31_RS15615 0.21 +0.0 20,024 + EX31_RS15615 0.21 -1.0 20,024 + EX31_RS15615 0.21 -0.1 20,025 - EX31_RS15615 0.21 -0.6 20,229 - EX31_RS15615 0.37 +0.5 20,258 + EX31_RS15615 0.39 -0.5 20,259 + EX31_RS15615 0.39 +0.4 20,259 - EX31_RS15615 0.39 -1.1 20,439 - EX31_RS15615 0.53 -0.6 20,452 - EX31_RS15615 0.54 -0.5 20,541 - EX31_RS15615 0.61 -2.7 20,541 - EX31_RS15615 0.61 +0.3 20,564 + EX31_RS15615 0.63 -0.1 20,629 - EX31_RS15615 0.68 -2.8 20,654 + EX31_RS15615 0.70 -0.3 20,654 + EX31_RS15615 0.70 -1.5 20,654 + EX31_RS15615 0.70 -1.6 20,655 - EX31_RS15615 0.70 +0.0 20,687 + EX31_RS15615 0.72 -0.3 20,688 - EX31_RS15615 0.72 +0.2 20,760 + EX31_RS15615 0.78 +0.7 20,761 - EX31_RS15615 0.78 -1.8 20,780 + EX31_RS15615 0.79 -0.0 20,781 - EX31_RS15615 0.79 +0.1 20,914 - EX31_RS15615 0.90 -0.8 20,921 + +0.3 20,922 - +0.3 21,049 - -0.5 21,049 - +0.6 21,148 - EX31_RS15620 0.10 +0.5 21,254 - EX31_RS15620 0.22 +0.9 21,303 + EX31_RS15620 0.27 -0.5 21,370 + EX31_RS15620 0.34 -0.2 21,371 - EX31_RS15620 0.34 -0.9 21,385 + EX31_RS15620 0.36 -0.3 21,386 - EX31_RS15620 0.36 +0.7 21,386 - EX31_RS15620 0.36 -0.4 21,436 + EX31_RS15620 0.42 +0.7 21,437 - EX31_RS15620 0.42 -0.1 21,437 - EX31_RS15620 0.42 +0.2 21,437 - EX31_RS15620 0.42 +0.1 21,437 - EX31_RS15620 0.42 -1.0 21,454 + EX31_RS15620 0.43 -1.4 21,461 - EX31_RS15620 0.44 +0.3 21,519 + EX31_RS15620 0.51 +0.7 21,519 + EX31_RS15620 0.51 -0.6 21,520 - EX31_RS15620 0.51 +0.7 21,631 + EX31_RS15620 0.63 +0.5 21,632 - EX31_RS15620 0.63 -0.4 21,691 + EX31_RS15620 0.69 +0.8 21,691 + EX31_RS15620 0.69 +0.1 21,694 - EX31_RS15620 0.70 +0.2 21,694 - EX31_RS15620 0.70 +0.3 21,721 - EX31_RS15620 0.73 -1.1 21,721 - EX31_RS15620 0.73 -0.8 21,826 - EX31_RS15620 0.84 +1.6 21,838 + EX31_RS15620 0.85 -1.6 21,839 - EX31_RS15620 0.86 -0.8 21,840 + EX31_RS15620 0.86 -0.2 21,840 + EX31_RS15620 0.86 -1.3 21,840 + EX31_RS15620 0.86 -2.3 21,840 + EX31_RS15620 0.86 -0.4 21,840 + EX31_RS15620 0.86 -1.1 21,840 + EX31_RS15620 0.86 +1.0 21,840 + EX31_RS15620 0.86 +0.4 21,841 - EX31_RS15620 0.86 +0.5 21,841 - EX31_RS15620 0.86 +3.6 21,894 + -2.9 21,894 + -0.0 21,894 + -1.4 21,915 + -1.1 21,915 + +0.3 21,940 + -0.5 21,940 + -0.0 21,941 - -0.2 21,941 - +0.8 21,974 + -0.8 21,974 + +0.2 21,974 + -0.5 21,975 - -0.4
Or see this region's nucleotide sequence