Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11835 and EX31_RS11840 are separated by 117 nucleotides EX31_RS11840 and EX31_RS11845 are separated by 119 nucleotides EX31_RS11845 and EX31_RS11850 are separated by 298 nucleotides
EX31_RS11835: EX31_RS11835 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 26,367 to 28,850
_RS11835
EX31_RS11840: EX31_RS11840 - diacylglycerol kinase, at 28,968 to 29,336
_RS11840
EX31_RS11845: EX31_RS11845 - repressor LexA, at 29,456 to 30,064
_RS11845
EX31_RS11850: EX31_RS11850 - MATE family efflux transporter DinF, at 30,363 to 31,727
_RS11850
Position (kb) 29
30
31 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 28.922 kb on + strand at 28.922 kb on + strand at 28.922 kb on + strand at 28.923 kb on - strand at 28.923 kb on - strand at 28.923 kb on - strand at 28.923 kb on - strand at 28.923 kb on - strand at 28.923 kb on - strand at 28.923 kb on - strand at 28.924 kb on + strand at 28.924 kb on + strand at 28.924 kb on + strand at 28.924 kb on + strand at 28.924 kb on + strand at 28.924 kb on + strand at 28.924 kb on + strand at 28.925 kb on - strand at 28.925 kb on - strand at 28.931 kb on + strand at 28.932 kb on - strand at 28.950 kb on + strand at 28.950 kb on + strand at 29.002 kb on - strand at 29.002 kb on - strand at 29.102 kb on - strand, within EX31_RS11840 at 29.206 kb on + strand, within EX31_RS11840 at 29.206 kb on + strand, within EX31_RS11840 at 29.206 kb on + strand, within EX31_RS11840 at 29.206 kb on + strand, within EX31_RS11840 at 29.206 kb on + strand, within EX31_RS11840 at 29.206 kb on + strand, within EX31_RS11840 at 29.207 kb on - strand, within EX31_RS11840 at 29.207 kb on - strand, within EX31_RS11840 at 29.272 kb on + strand, within EX31_RS11840 at 29.272 kb on + strand, within EX31_RS11840 at 29.272 kb on + strand, within EX31_RS11840 at 29.272 kb on + strand, within EX31_RS11840 at 29.273 kb on - strand, within EX31_RS11840 at 29.273 kb on - strand, within EX31_RS11840 at 29.287 kb on + strand, within EX31_RS11840 at 29.287 kb on + strand, within EX31_RS11840 at 29.287 kb on + strand, within EX31_RS11840 at 29.287 kb on + strand, within EX31_RS11840 at 29.287 kb on + strand, within EX31_RS11840 at 29.287 kb on + strand, within EX31_RS11840 at 29.288 kb on - strand, within EX31_RS11840 at 29.288 kb on - strand, within EX31_RS11840 at 29.288 kb on - strand, within EX31_RS11840 at 29.288 kb on - strand, within EX31_RS11840 at 29.288 kb on - strand, within EX31_RS11840 at 29.288 kb on - strand, within EX31_RS11840 at 29.366 kb on + strand at 29.367 kb on - strand at 29.367 kb on - strand at 29.379 kb on + strand at 29.390 kb on - strand at 29.414 kb on + strand at 29.414 kb on + strand at 29.414 kb on + strand at 29.414 kb on + strand at 29.414 kb on + strand at 29.415 kb on - strand at 29.415 kb on - strand at 29.415 kb on - strand at 29.416 kb on + strand at 29.416 kb on + strand at 29.416 kb on + strand at 29.416 kb on + strand at 29.416 kb on + strand at 29.417 kb on - strand at 29.418 kb on + strand at 29.418 kb on + strand at 29.418 kb on + strand at 29.418 kb on + strand at 29.418 kb on + strand at 29.418 kb on + strand at 29.418 kb on + strand at 29.435 kb on + strand at 29.437 kb on + strand at 29.955 kb on + strand, within EX31_RS11845 at 30.071 kb on + strand at 30.072 kb on - strand at 30.081 kb on + strand at 30.081 kb on + strand at 30.081 kb on + strand at 30.081 kb on + strand at 30.081 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.119 kb on + strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.120 kb on - strand at 30.127 kb on + strand at 30.127 kb on + strand at 30.127 kb on + strand at 30.127 kb on + strand at 30.127 kb on + strand at 30.127 kb on + strand at 30.127 kb on + strand at 30.146 kb on + strand at 30.146 kb on + strand at 30.147 kb on - strand at 30.147 kb on - strand at 30.147 kb on - strand at 30.147 kb on - strand at 30.147 kb on - strand at 30.161 kb on + strand at 30.161 kb on + strand at 30.161 kb on + strand at 30.161 kb on + strand at 30.161 kb on + strand at 30.161 kb on + strand at 30.162 kb on - strand at 30.162 kb on - strand at 30.162 kb on - strand at 30.162 kb on - strand at 30.162 kb on - strand at 30.162 kb on - strand at 30.163 kb on + strand at 30.164 kb on - strand at 30.164 kb on - strand at 30.164 kb on - strand at 30.185 kb on + strand at 30.185 kb on + strand at 30.185 kb on + strand at 30.186 kb on - strand at 30.186 kb on - strand at 30.186 kb on - strand at 30.191 kb on + strand at 30.191 kb on + strand at 30.191 kb on + strand at 30.191 kb on + strand at 30.191 kb on + strand at 30.191 kb on + strand at 30.191 kb on + strand at 30.191 kb on + strand at 30.192 kb on - strand at 30.192 kb on - strand at 30.192 kb on - strand at 30.192 kb on - strand at 30.192 kb on - strand at 30.192 kb on - strand at 30.215 kb on + strand at 30.215 kb on + strand at 30.216 kb on - strand at 30.216 kb on - strand at 30.225 kb on + strand at 30.226 kb on - strand at 30.226 kb on - strand at 30.231 kb on + strand at 30.231 kb on + strand at 30.231 kb on + strand at 30.232 kb on - strand at 30.240 kb on - strand at 30.326 kb on + strand at 30.326 kb on + strand at 30.327 kb on - strand at 30.327 kb on - strand at 30.327 kb on - strand at 30.327 kb on - strand at 30.327 kb on - strand at 30.327 kb on - strand at 30.327 kb on - strand at 30.334 kb on + strand at 30.334 kb on + strand at 30.335 kb on - strand at 30.335 kb on - strand at 30.362 kb on + strand at 30.363 kb on - strand at 30.406 kb on + strand at 30.461 kb on + strand at 30.525 kb on + strand, within EX31_RS11850 at 30.525 kb on + strand, within EX31_RS11850 at 30.526 kb on - strand, within EX31_RS11850 at 30.572 kb on + strand, within EX31_RS11850 at 30.572 kb on + strand, within EX31_RS11850 at 30.573 kb on - strand, within EX31_RS11850 at 30.573 kb on - strand, within EX31_RS11850 at 30.580 kb on + strand, within EX31_RS11850 at 30.580 kb on + strand, within EX31_RS11850 at 30.581 kb on - strand, within EX31_RS11850 at 30.581 kb on - strand, within EX31_RS11850 at 30.581 kb on - strand, within EX31_RS11850 at 30.581 kb on - strand, within EX31_RS11850 at 30.599 kb on + strand, within EX31_RS11850 at 30.600 kb on - strand, within EX31_RS11850 at 30.664 kb on + strand, within EX31_RS11850 at 30.664 kb on + strand, within EX31_RS11850 at 30.665 kb on - strand, within EX31_RS11850 at 30.701 kb on + strand, within EX31_RS11850 at 30.709 kb on + strand, within EX31_RS11850 at 30.709 kb on + strand, within EX31_RS11850 at 30.865 kb on - strand, within EX31_RS11850 at 30.865 kb on - strand, within EX31_RS11850 at 30.911 kb on + strand, within EX31_RS11850 at 30.911 kb on + strand, within EX31_RS11850 at 30.991 kb on - strand, within EX31_RS11850 at 31.001 kb on - strand, within EX31_RS11850 at 31.014 kb on + strand, within EX31_RS11850 at 31.014 kb on + strand, within EX31_RS11850 at 31.014 kb on + strand, within EX31_RS11850 at 31.014 kb on + strand, within EX31_RS11850 at 31.015 kb on - strand, within EX31_RS11850 at 31.015 kb on - strand, within EX31_RS11850
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 28,922 + +0.2 28,922 + -1.2 28,922 + +0.2 28,923 - -0.8 28,923 - +0.6 28,923 - +0.1 28,923 - -0.1 28,923 - -0.1 28,923 - -0.1 28,923 - +0.5 28,924 + +0.1 28,924 + -1.2 28,924 + +0.2 28,924 + -0.1 28,924 + +0.2 28,924 + -0.2 28,924 + -0.1 28,925 - +0.2 28,925 - +0.1 28,931 + -0.4 28,932 - +0.1 28,950 + +0.3 28,950 + -0.0 29,002 - -0.5 29,002 - -1.3 29,102 - EX31_RS11840 0.36 +0.1 29,206 + EX31_RS11840 0.64 -0.7 29,206 + EX31_RS11840 0.64 -0.3 29,206 + EX31_RS11840 0.64 -0.4 29,206 + EX31_RS11840 0.64 -0.7 29,206 + EX31_RS11840 0.64 -1.6 29,206 + EX31_RS11840 0.64 -0.2 29,207 - EX31_RS11840 0.65 -0.6 29,207 - EX31_RS11840 0.65 -0.1 29,272 + EX31_RS11840 0.82 -0.6 29,272 + EX31_RS11840 0.82 -1.2 29,272 + EX31_RS11840 0.82 -1.0 29,272 + EX31_RS11840 0.82 -0.1 29,273 - EX31_RS11840 0.83 -0.6 29,273 - EX31_RS11840 0.83 -0.5 29,287 + EX31_RS11840 0.86 +0.2 29,287 + EX31_RS11840 0.86 -1.6 29,287 + EX31_RS11840 0.86 -1.9 29,287 + EX31_RS11840 0.86 +0.1 29,287 + EX31_RS11840 0.86 -0.3 29,287 + EX31_RS11840 0.86 -0.6 29,288 - EX31_RS11840 0.87 -1.2 29,288 - EX31_RS11840 0.87 -1.7 29,288 - EX31_RS11840 0.87 +0.1 29,288 - EX31_RS11840 0.87 -0.8 29,288 - EX31_RS11840 0.87 -0.8 29,288 - EX31_RS11840 0.87 -0.4 29,366 + +0.4 29,367 - -0.7 29,367 - +1.0 29,379 + +0.1 29,390 - -2.1 29,414 + +0.4 29,414 + -1.4 29,414 + +0.4 29,414 + +0.3 29,414 + -0.1 29,415 - +0.3 29,415 - -0.2 29,415 - +0.7 29,416 + +0.5 29,416 + -0.1 29,416 + +0.9 29,416 + +0.6 29,416 + -1.1 29,417 - -1.3 29,418 + -0.1 29,418 + -0.9 29,418 + +0.7 29,418 + +0.3 29,418 + +0.8 29,418 + -0.4 29,418 + -0.2 29,435 + -0.4 29,437 + +0.2 29,955 + EX31_RS11845 0.82 -0.4 30,071 + +0.4 30,072 - -0.5 30,081 + -0.2 30,081 + -0.1 30,081 + +0.5 30,081 + +0.0 30,081 + +0.6 30,119 + +0.4 30,119 + -1.0 30,119 + -0.1 30,119 + +0.1 30,119 + +0.1 30,119 + +0.2 30,119 + -0.5 30,119 + +0.2 30,119 + +0.1 30,119 + -0.1 30,119 + +0.3 30,119 + +0.6 30,119 + -1.4 30,119 + -0.2 30,119 + -1.1 30,120 - +0.2 30,120 - -0.7 30,120 - -0.7 30,120 - -0.5 30,120 - -0.7 30,120 - +0.6 30,120 - +0.3 30,120 - +1.1 30,120 - -1.4 30,120 - -0.7 30,120 - -1.8 30,120 - -0.5 30,120 - -0.3 30,120 - -0.2 30,120 - +0.1 30,120 - +1.5 30,127 + +0.1 30,127 + +0.1 30,127 + +0.6 30,127 + -0.5 30,127 + +0.0 30,127 + -0.2 30,127 + -1.0 30,146 + +0.6 30,146 + +0.2 30,147 - -0.7 30,147 - +0.1 30,147 - -0.7 30,147 - +1.0 30,147 - +0.2 30,161 + +0.5 30,161 + -1.5 30,161 + +0.4 30,161 + +0.1 30,161 + +0.3 30,161 + -1.1 30,162 - +0.1 30,162 - -0.3 30,162 - +0.8 30,162 - +0.1 30,162 - +0.6 30,162 - +0.5 30,163 + -0.7 30,164 - +0.2 30,164 - -0.3 30,164 - -0.5 30,185 + +1.0 30,185 + +0.7 30,185 + +0.2 30,186 - +0.7 30,186 - -0.1 30,186 - +0.4 30,191 + +0.4 30,191 + -1.1 30,191 + -1.6 30,191 + +0.3 30,191 + -0.2 30,191 + -0.1 30,191 + +0.5 30,191 + +0.9 30,192 - +0.6 30,192 - +0.2 30,192 - +0.8 30,192 - -0.0 30,192 - -0.3 30,192 - -0.2 30,215 + -1.4 30,215 + +0.5 30,216 - +0.6 30,216 - -0.5 30,225 + +0.1 30,226 - +0.7 30,226 - -0.7 30,231 + +0.4 30,231 + +1.0 30,231 + +0.4 30,232 - +0.6 30,240 - -0.6 30,326 + -0.0 30,326 + -1.0 30,327 - +0.0 30,327 - +0.4 30,327 - -0.3 30,327 - -0.3 30,327 - +1.0 30,327 - -0.1 30,327 - -1.5 30,334 + -0.3 30,334 + +0.3 30,335 - -0.3 30,335 - +0.7 30,362 + +0.2 30,363 - +0.6 30,406 + -0.0 30,461 + +0.3 30,525 + EX31_RS11850 0.12 -0.9 30,525 + EX31_RS11850 0.12 +1.2 30,526 - EX31_RS11850 0.12 -0.9 30,572 + EX31_RS11850 0.15 +0.8 30,572 + EX31_RS11850 0.15 -1.7 30,573 - EX31_RS11850 0.15 -0.5 30,573 - EX31_RS11850 0.15 -0.9 30,580 + EX31_RS11850 0.16 +0.2 30,580 + EX31_RS11850 0.16 -0.5 30,581 - EX31_RS11850 0.16 -0.5 30,581 - EX31_RS11850 0.16 +0.7 30,581 - EX31_RS11850 0.16 -0.8 30,581 - EX31_RS11850 0.16 +0.7 30,599 + EX31_RS11850 0.17 -0.1 30,600 - EX31_RS11850 0.17 +0.5 30,664 + EX31_RS11850 0.22 -0.6 30,664 + EX31_RS11850 0.22 -0.9 30,665 - EX31_RS11850 0.22 -0.1 30,701 + EX31_RS11850 0.25 +0.0 30,709 + EX31_RS11850 0.25 +2.8 30,709 + EX31_RS11850 0.25 +0.1 30,865 - EX31_RS11850 0.37 +0.4 30,865 - EX31_RS11850 0.37 +0.5 30,911 + EX31_RS11850 0.40 -0.3 30,911 + EX31_RS11850 0.40 -0.0 30,991 - EX31_RS11850 0.46 -2.7 31,001 - EX31_RS11850 0.47 +0.1 31,014 + EX31_RS11850 0.48 +0.4 31,014 + EX31_RS11850 0.48 -0.2 31,014 + EX31_RS11850 0.48 -0.3 31,014 + EX31_RS11850 0.48 +0.5 31,015 - EX31_RS11850 0.48 +1.6 31,015 - EX31_RS11850 0.48 -1.7
Or see this region's nucleotide sequence