Strain Fitness in Rahnella sp. WP5 around EX31_RS11225

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11220 and EX31_RS11225 are separated by 9 nucleotidesEX31_RS11225 and EX31_RS11230 are separated by 229 nucleotides EX31_RS11220: EX31_RS11220 - LLM class flavin-dependent oxidoreductase, at 176,419 to 177,756 _RS11220 EX31_RS11225: EX31_RS11225 - MsnO8 family LLM class oxidoreductase, at 177,766 to 178,752 _RS11225 EX31_RS11230: EX31_RS11230 - amidohydrolase, at 178,982 to 180,166 _RS11230 Position (kb) 177 178 179Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 176.789 kb on - strand, within EX31_RS11220at 176.910 kb on - strand, within EX31_RS11220at 176.968 kb on - strand, within EX31_RS11220at 177.021 kb on - strand, within EX31_RS11220at 177.075 kb on + strand, within EX31_RS11220at 177.198 kb on + strand, within EX31_RS11220at 177.198 kb on + strand, within EX31_RS11220at 177.297 kb on - strand, within EX31_RS11220at 177.297 kb on - strand, within EX31_RS11220at 177.297 kb on - strand, within EX31_RS11220at 177.297 kb on - strand, within EX31_RS11220at 177.414 kb on + strand, within EX31_RS11220at 177.414 kb on + strand, within EX31_RS11220at 177.414 kb on + strand, within EX31_RS11220at 177.414 kb on + strand, within EX31_RS11220at 177.415 kb on - strand, within EX31_RS11220at 177.415 kb on - strand, within EX31_RS11220at 177.415 kb on - strand, within EX31_RS11220at 177.415 kb on - strand, within EX31_RS11220at 177.415 kb on - strand, within EX31_RS11220at 177.415 kb on - strand, within EX31_RS11220at 177.415 kb on - strand, within EX31_RS11220at 177.415 kb on - strand, within EX31_RS11220at 177.415 kb on - strand, within EX31_RS11220at 177.418 kb on + strand, within EX31_RS11220at 177.418 kb on + strand, within EX31_RS11220at 177.418 kb on + strand, within EX31_RS11220at 177.419 kb on - strand, within EX31_RS11220at 177.419 kb on - strand, within EX31_RS11220at 177.458 kb on + strand, within EX31_RS11220at 177.471 kb on + strand, within EX31_RS11220at 177.472 kb on - strand, within EX31_RS11220at 177.577 kb on + strand, within EX31_RS11220at 177.578 kb on - strand, within EX31_RS11220at 177.631 kb on + strandat 177.835 kb on - strandat 177.938 kb on + strand, within EX31_RS11225at 177.939 kb on - strand, within EX31_RS11225at 177.996 kb on + strand, within EX31_RS11225at 178.121 kb on + strand, within EX31_RS11225at 178.121 kb on + strand, within EX31_RS11225at 178.122 kb on - strand, within EX31_RS11225at 178.174 kb on - strand, within EX31_RS11225at 178.325 kb on + strand, within EX31_RS11225at 178.325 kb on + strand, within EX31_RS11225at 178.325 kb on + strand, within EX31_RS11225at 178.325 kb on + strand, within EX31_RS11225at 178.326 kb on - strand, within EX31_RS11225at 178.326 kb on - strand, within EX31_RS11225at 178.343 kb on - strand, within EX31_RS11225at 178.343 kb on - strand, within EX31_RS11225at 178.381 kb on - strand, within EX31_RS11225at 178.381 kb on - strand, within EX31_RS11225at 178.494 kb on + strand, within EX31_RS11225at 178.495 kb on - strand, within EX31_RS11225at 178.505 kb on + strand, within EX31_RS11225at 178.505 kb on + strand, within EX31_RS11225at 178.630 kb on + strand, within EX31_RS11225at 178.641 kb on - strand, within EX31_RS11225at 178.730 kb on - strandat 178.733 kb on - strandat 178.733 kb on - strandat 178.811 kb on + strandat 178.812 kb on - strandat 178.832 kb on + strandat 178.833 kb on - strandat 178.833 kb on - strandat 178.834 kb on + strandat 178.835 kb on - strandat 178.842 kb on - strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.884 kb on - strandat 178.894 kb on + strandat 178.898 kb on + strandat 178.898 kb on + strandat 178.898 kb on + strandat 178.898 kb on + strandat 178.938 kb on + strandat 178.939 kb on - strandat 178.939 kb on - strandat 178.949 kb on - strandat 178.968 kb on + strandat 179.073 kb on + strandat 179.327 kb on - strand, within EX31_RS11230at 179.327 kb on - strand, within EX31_RS11230at 179.392 kb on - strand, within EX31_RS11230at 179.446 kb on + strand, within EX31_RS11230at 179.491 kb on + strand, within EX31_RS11230at 179.568 kb on + strand, within EX31_RS11230at 179.569 kb on - strand, within EX31_RS11230at 179.742 kb on + strand, within EX31_RS11230at 179.743 kb on - strand, within EX31_RS11230at 179.743 kb on - strand, within EX31_RS11230at 179.743 kb on - strand, within EX31_RS11230at 179.743 kb on - strand, within EX31_RS11230at 179.743 kb on - strand, within EX31_RS11230

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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176,789 - EX31_RS11220 0.28 -0.9
176,910 - EX31_RS11220 0.37 +1.5
176,968 - EX31_RS11220 0.41 +1.0
177,021 - EX31_RS11220 0.45 -0.8
177,075 + EX31_RS11220 0.49 +1.8
177,198 + EX31_RS11220 0.58 -1.1
177,198 + EX31_RS11220 0.58 +0.1
177,297 - EX31_RS11220 0.66 -0.3
177,297 - EX31_RS11220 0.66 +0.8
177,297 - EX31_RS11220 0.66 +1.6
177,297 - EX31_RS11220 0.66 -0.8
177,414 + EX31_RS11220 0.74 -0.4
177,414 + EX31_RS11220 0.74 -0.8
177,414 + EX31_RS11220 0.74 +1.0
177,414 + EX31_RS11220 0.74 -1.0
177,415 - EX31_RS11220 0.74 -3.1
177,415 - EX31_RS11220 0.74 +1.0
177,415 - EX31_RS11220 0.74 +0.9
177,415 - EX31_RS11220 0.74 +0.3
177,415 - EX31_RS11220 0.74 -0.2
177,415 - EX31_RS11220 0.74 -2.9
177,415 - EX31_RS11220 0.74 +0.4
177,415 - EX31_RS11220 0.74 +1.1
177,415 - EX31_RS11220 0.74 -1.2
177,418 + EX31_RS11220 0.75 +0.3
177,418 + EX31_RS11220 0.75 +0.2
177,418 + EX31_RS11220 0.75 -1.0
177,419 - EX31_RS11220 0.75 +0.2
177,419 - EX31_RS11220 0.75 -1.3
177,458 + EX31_RS11220 0.78 +0.7
177,471 + EX31_RS11220 0.79 +1.0
177,472 - EX31_RS11220 0.79 -0.1
177,577 + EX31_RS11220 0.87 -1.5
177,578 - EX31_RS11220 0.87 -1.9
177,631 + +0.0
177,835 - +0.1
177,938 + EX31_RS11225 0.17 +0.2
177,939 - EX31_RS11225 0.18 -1.0
177,996 + EX31_RS11225 0.23 +0.8
178,121 + EX31_RS11225 0.36 +0.2
178,121 + EX31_RS11225 0.36 -1.4
178,122 - EX31_RS11225 0.36 -1.4
178,174 - EX31_RS11225 0.41 -0.3
178,325 + EX31_RS11225 0.57 -2.6
178,325 + EX31_RS11225 0.57 -0.8
178,325 + EX31_RS11225 0.57 -1.4
178,325 + EX31_RS11225 0.57 -0.6
178,326 - EX31_RS11225 0.57 -0.5
178,326 - EX31_RS11225 0.57 -0.5
178,343 - EX31_RS11225 0.58 -0.2
178,343 - EX31_RS11225 0.58 +0.5
178,381 - EX31_RS11225 0.62 +1.0
178,381 - EX31_RS11225 0.62 -0.5
178,494 + EX31_RS11225 0.74 -1.3
178,495 - EX31_RS11225 0.74 -0.9
178,505 + EX31_RS11225 0.75 -0.7
178,505 + EX31_RS11225 0.75 -1.6
178,630 + EX31_RS11225 0.88 -2.1
178,641 - EX31_RS11225 0.89 +0.4
178,730 - +1.3
178,733 - -0.1
178,733 - -1.6
178,811 + -0.6
178,812 - -0.3
178,832 + +0.6
178,833 - +0.1
178,833 - +1.7
178,834 + +0.1
178,835 - +1.6
178,842 - +0.8
178,877 - +0.6
178,877 - +0.9
178,884 - -1.4
178,894 + +0.1
178,898 + +0.2
178,898 + -0.5
178,898 + +0.0
178,898 + +0.8
178,938 + -0.5
178,939 - -0.6
178,939 - -0.3
178,949 - -0.5
178,968 + +0.1
179,073 + +0.8
179,327 - EX31_RS11230 0.29 -0.0
179,327 - EX31_RS11230 0.29 -0.6
179,392 - EX31_RS11230 0.35 +0.6
179,446 + EX31_RS11230 0.39 +1.1
179,491 + EX31_RS11230 0.43 +0.2
179,568 + EX31_RS11230 0.49 +0.5
179,569 - EX31_RS11230 0.50 +1.0
179,742 + EX31_RS11230 0.64 -0.2
179,743 - EX31_RS11230 0.64 -0.5
179,743 - EX31_RS11230 0.64 +0.7
179,743 - EX31_RS11230 0.64 -0.3
179,743 - EX31_RS11230 0.64 -0.4
179,743 - EX31_RS11230 0.64 -0.3

Or see this region's nucleotide sequence