Strain Fitness in Rahnella sp. WP5 around EX31_RS10910

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10905 and EX31_RS10910 are separated by 27 nucleotidesEX31_RS10910 and EX31_RS10915 overlap by 4 nucleotides EX31_RS10905: EX31_RS10905 - DUF2264 domain-containing protein, at 107,590 to 109,428 _RS10905 EX31_RS10910: EX31_RS10910 - oligosaccharide MFS transporter, at 109,456 to 110,745 _RS10910 EX31_RS10915: EX31_RS10915 - glucuronyl hydrolase, at 110,742 to 111,932 _RS10915 Position (kb) 109 110 111Strain fitness (log2 ratio) -2 -1 0 1 2 3at 108.559 kb on + strand, within EX31_RS10905at 108.559 kb on + strand, within EX31_RS10905at 108.561 kb on + strand, within EX31_RS10905at 108.677 kb on - strand, within EX31_RS10905at 108.677 kb on - strand, within EX31_RS10905at 108.778 kb on - strand, within EX31_RS10905at 108.790 kb on + strand, within EX31_RS10905at 108.830 kb on + strand, within EX31_RS10905at 108.955 kb on + strand, within EX31_RS10905at 108.956 kb on - strand, within EX31_RS10905at 109.236 kb on + strand, within EX31_RS10905at 109.236 kb on + strand, within EX31_RS10905at 109.236 kb on + strand, within EX31_RS10905at 109.236 kb on + strand, within EX31_RS10905at 109.236 kb on + strand, within EX31_RS10905at 109.237 kb on - strand, within EX31_RS10905at 109.237 kb on - strand, within EX31_RS10905at 109.237 kb on - strand, within EX31_RS10905at 109.313 kb on + strandat 109.314 kb on - strandat 109.314 kb on - strandat 109.314 kb on - strandat 109.336 kb on - strandat 109.427 kb on - strandat 109.455 kb on + strandat 109.456 kb on - strandat 109.480 kb on - strandat 109.489 kb on + strandat 109.490 kb on - strandat 109.492 kb on + strandat 109.510 kb on - strandat 109.510 kb on - strandat 109.511 kb on + strandat 109.519 kb on + strandat 109.550 kb on + strandat 109.551 kb on - strandat 109.552 kb on + strandat 109.553 kb on - strandat 109.553 kb on - strandat 109.657 kb on + strand, within EX31_RS10910at 109.659 kb on + strand, within EX31_RS10910at 109.659 kb on + strand, within EX31_RS10910at 109.659 kb on + strand, within EX31_RS10910at 109.660 kb on - strand, within EX31_RS10910at 109.660 kb on - strand, within EX31_RS10910at 109.660 kb on - strand, within EX31_RS10910at 109.660 kb on - strand, within EX31_RS10910at 109.696 kb on + strand, within EX31_RS10910at 109.697 kb on - strand, within EX31_RS10910at 109.801 kb on + strand, within EX31_RS10910at 110.137 kb on + strand, within EX31_RS10910at 110.191 kb on + strand, within EX31_RS10910at 110.214 kb on + strand, within EX31_RS10910at 110.404 kb on - strand, within EX31_RS10910at 110.453 kb on + strand, within EX31_RS10910at 110.454 kb on - strand, within EX31_RS10910at 110.462 kb on - strand, within EX31_RS10910at 110.503 kb on + strand, within EX31_RS10910at 110.503 kb on + strand, within EX31_RS10910at 110.503 kb on + strand, within EX31_RS10910at 110.503 kb on + strand, within EX31_RS10910at 110.503 kb on + strand, within EX31_RS10910at 110.503 kb on + strand, within EX31_RS10910at 110.504 kb on - strand, within EX31_RS10910at 110.504 kb on - strand, within EX31_RS10910at 110.504 kb on - strand, within EX31_RS10910at 110.504 kb on - strand, within EX31_RS10910at 110.530 kb on + strand, within EX31_RS10910at 110.531 kb on - strand, within EX31_RS10910at 110.573 kb on - strand, within EX31_RS10910at 110.599 kb on + strand, within EX31_RS10910at 110.599 kb on + strand, within EX31_RS10910at 110.599 kb on + strand, within EX31_RS10910at 110.599 kb on + strand, within EX31_RS10910at 110.600 kb on - strand, within EX31_RS10910at 110.600 kb on - strand, within EX31_RS10910at 110.631 kb on + strandat 110.631 kb on + strandat 110.718 kb on + strandat 110.718 kb on + strandat 110.741 kb on + strandat 110.741 kb on + strandat 110.741 kb on + strandat 110.742 kb on - strandat 110.747 kb on + strandat 110.969 kb on - strand, within EX31_RS10915at 111.093 kb on + strand, within EX31_RS10915at 111.118 kb on - strand, within EX31_RS10915at 111.288 kb on + strand, within EX31_RS10915at 111.364 kb on - strand, within EX31_RS10915at 111.366 kb on - strand, within EX31_RS10915at 111.391 kb on - strand, within EX31_RS10915at 111.399 kb on + strand, within EX31_RS10915at 111.399 kb on + strand, within EX31_RS10915at 111.400 kb on - strand, within EX31_RS10915at 111.400 kb on - strand, within EX31_RS10915at 111.400 kb on - strand, within EX31_RS10915at 111.400 kb on - strand, within EX31_RS10915at 111.402 kb on + strand, within EX31_RS10915at 111.402 kb on + strand, within EX31_RS10915at 111.402 kb on + strand, within EX31_RS10915at 111.403 kb on - strand, within EX31_RS10915at 111.403 kb on - strand, within EX31_RS10915at 111.403 kb on - strand, within EX31_RS10915at 111.403 kb on - strand, within EX31_RS10915at 111.403 kb on - strand, within EX31_RS10915at 111.403 kb on - strand, within EX31_RS10915at 111.440 kb on + strand, within EX31_RS10915at 111.441 kb on - strand, within EX31_RS10915at 111.498 kb on + strand, within EX31_RS10915at 111.516 kb on + strand, within EX31_RS10915at 111.522 kb on + strand, within EX31_RS10915at 111.523 kb on - strand, within EX31_RS10915at 111.716 kb on + strand, within EX31_RS10915at 111.729 kb on + strand, within EX31_RS10915

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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108,559 + EX31_RS10905 0.53 +1.4
108,559 + EX31_RS10905 0.53 -0.8
108,561 + EX31_RS10905 0.53 +0.1
108,677 - EX31_RS10905 0.59 -0.2
108,677 - EX31_RS10905 0.59 +0.6
108,778 - EX31_RS10905 0.65 -0.9
108,790 + EX31_RS10905 0.65 +0.5
108,830 + EX31_RS10905 0.67 +0.7
108,955 + EX31_RS10905 0.74 -1.6
108,956 - EX31_RS10905 0.74 -0.6
109,236 + EX31_RS10905 0.90 -1.1
109,236 + EX31_RS10905 0.90 -1.9
109,236 + EX31_RS10905 0.90 +0.8
109,236 + EX31_RS10905 0.90 +0.1
109,236 + EX31_RS10905 0.90 +1.0
109,237 - EX31_RS10905 0.90 +0.7
109,237 - EX31_RS10905 0.90 -0.3
109,237 - EX31_RS10905 0.90 -0.0
109,313 + -0.5
109,314 - -1.1
109,314 - -0.7
109,314 - +1.0
109,336 - +0.4
109,427 - +0.3
109,455 + -0.0
109,456 - -0.9
109,480 - -0.8
109,489 + +0.8
109,490 - -0.5
109,492 + -0.5
109,510 - -2.7
109,510 - -0.4
109,511 + -1.8
109,519 + -2.0
109,550 + +0.3
109,551 - -0.6
109,552 + -0.1
109,553 - -1.6
109,553 - -0.3
109,657 + EX31_RS10910 0.16 +0.2
109,659 + EX31_RS10910 0.16 -0.3
109,659 + EX31_RS10910 0.16 +0.1
109,659 + EX31_RS10910 0.16 +0.3
109,660 - EX31_RS10910 0.16 +1.0
109,660 - EX31_RS10910 0.16 +2.5
109,660 - EX31_RS10910 0.16 +0.3
109,660 - EX31_RS10910 0.16 -1.3
109,696 + EX31_RS10910 0.19 +0.4
109,697 - EX31_RS10910 0.19 +0.5
109,801 + EX31_RS10910 0.27 -0.7
110,137 + EX31_RS10910 0.53 -0.9
110,191 + EX31_RS10910 0.57 -1.1
110,214 + EX31_RS10910 0.59 +0.9
110,404 - EX31_RS10910 0.73 +2.4
110,453 + EX31_RS10910 0.77 -1.2
110,454 - EX31_RS10910 0.77 -0.8
110,462 - EX31_RS10910 0.78 -0.6
110,503 + EX31_RS10910 0.81 -0.9
110,503 + EX31_RS10910 0.81 +0.2
110,503 + EX31_RS10910 0.81 -1.8
110,503 + EX31_RS10910 0.81 -0.4
110,503 + EX31_RS10910 0.81 +1.3
110,503 + EX31_RS10910 0.81 -0.0
110,504 - EX31_RS10910 0.81 +1.6
110,504 - EX31_RS10910 0.81 +0.1
110,504 - EX31_RS10910 0.81 +0.7
110,504 - EX31_RS10910 0.81 -2.1
110,530 + EX31_RS10910 0.83 -0.5
110,531 - EX31_RS10910 0.83 +0.4
110,573 - EX31_RS10910 0.87 -0.1
110,599 + EX31_RS10910 0.89 +0.3
110,599 + EX31_RS10910 0.89 +0.8
110,599 + EX31_RS10910 0.89 -0.9
110,599 + EX31_RS10910 0.89 +0.4
110,600 - EX31_RS10910 0.89 +0.2
110,600 - EX31_RS10910 0.89 +0.8
110,631 + +0.6
110,631 + -1.0
110,718 + +0.4
110,718 + +1.0
110,741 + +1.3
110,741 + -0.4
110,741 + -1.1
110,742 - -2.0
110,747 + -0.8
110,969 - EX31_RS10915 0.19 +0.7
111,093 + EX31_RS10915 0.29 +1.2
111,118 - EX31_RS10915 0.32 -1.6
111,288 + EX31_RS10915 0.46 -0.7
111,364 - EX31_RS10915 0.52 -0.8
111,366 - EX31_RS10915 0.52 +1.6
111,391 - EX31_RS10915 0.54 +0.2
111,399 + EX31_RS10915 0.55 +0.9
111,399 + EX31_RS10915 0.55 -0.4
111,400 - EX31_RS10915 0.55 +1.6
111,400 - EX31_RS10915 0.55 -0.7
111,400 - EX31_RS10915 0.55 +1.2
111,400 - EX31_RS10915 0.55 +0.1
111,402 + EX31_RS10915 0.55 +0.9
111,402 + EX31_RS10915 0.55 +0.6
111,402 + EX31_RS10915 0.55 -0.7
111,403 - EX31_RS10915 0.55 +0.3
111,403 - EX31_RS10915 0.55 +0.4
111,403 - EX31_RS10915 0.55 +1.0
111,403 - EX31_RS10915 0.55 +0.8
111,403 - EX31_RS10915 0.55 +0.8
111,403 - EX31_RS10915 0.55 -1.9
111,440 + EX31_RS10915 0.59 +0.3
111,441 - EX31_RS10915 0.59 +2.0
111,498 + EX31_RS10915 0.63 -1.5
111,516 + EX31_RS10915 0.65 -0.6
111,522 + EX31_RS10915 0.65 +1.8
111,523 - EX31_RS10915 0.66 +0.3
111,716 + EX31_RS10915 0.82 +2.8
111,729 + EX31_RS10915 0.83 -0.4

Or see this region's nucleotide sequence