Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10900 and EX31_RS10905 are separated by 260 nucleotides EX31_RS10905 and EX31_RS10910 are separated by 27 nucleotides
EX31_RS10900: EX31_RS10900 - helix-turn-helix domain-containing protein, at 106,478 to 107,329
_RS10900
EX31_RS10905: EX31_RS10905 - DUF2264 domain-containing protein, at 107,590 to 109,428
_RS10905
EX31_RS10910: EX31_RS10910 - oligosaccharide MFS transporter, at 109,456 to 110,745
_RS10910
Position (kb) 107
108
109
110 Strain fitness (log2 ratio) -2
-1
0
1
2 at 106.622 kb on + strand, within EX31_RS10900 at 106.659 kb on + strand, within EX31_RS10900 at 106.705 kb on + strand, within EX31_RS10900 at 106.706 kb on - strand, within EX31_RS10900 at 106.706 kb on - strand, within EX31_RS10900 at 106.706 kb on - strand, within EX31_RS10900 at 106.707 kb on + strand, within EX31_RS10900 at 106.937 kb on + strand, within EX31_RS10900 at 106.937 kb on + strand, within EX31_RS10900 at 106.937 kb on + strand, within EX31_RS10900 at 106.937 kb on + strand, within EX31_RS10900 at 106.937 kb on + strand, within EX31_RS10900 at 106.937 kb on + strand, within EX31_RS10900 at 106.937 kb on + strand, within EX31_RS10900 at 106.938 kb on - strand, within EX31_RS10900 at 106.938 kb on - strand, within EX31_RS10900 at 106.938 kb on - strand, within EX31_RS10900 at 106.938 kb on - strand, within EX31_RS10900 at 106.940 kb on - strand, within EX31_RS10900 at 106.965 kb on + strand, within EX31_RS10900 at 106.965 kb on + strand, within EX31_RS10900 at 106.966 kb on - strand, within EX31_RS10900 at 107.082 kb on + strand, within EX31_RS10900 at 107.167 kb on - strand, within EX31_RS10900 at 107.167 kb on - strand, within EX31_RS10900 at 107.409 kb on + strand at 107.409 kb on + strand at 107.686 kb on - strand at 107.878 kb on + strand, within EX31_RS10905 at 108.084 kb on + strand, within EX31_RS10905 at 108.149 kb on - strand, within EX31_RS10905 at 108.151 kb on + strand, within EX31_RS10905 at 108.151 kb on + strand, within EX31_RS10905 at 108.238 kb on + strand, within EX31_RS10905 at 108.238 kb on + strand, within EX31_RS10905 at 108.284 kb on + strand, within EX31_RS10905 at 108.285 kb on - strand, within EX31_RS10905 at 108.412 kb on + strand, within EX31_RS10905 at 108.444 kb on + strand, within EX31_RS10905 at 108.445 kb on - strand, within EX31_RS10905 at 108.559 kb on + strand, within EX31_RS10905 at 108.559 kb on + strand, within EX31_RS10905 at 108.561 kb on + strand, within EX31_RS10905 at 108.677 kb on - strand, within EX31_RS10905 at 108.677 kb on - strand, within EX31_RS10905 at 108.778 kb on - strand, within EX31_RS10905 at 108.790 kb on + strand, within EX31_RS10905 at 108.830 kb on + strand, within EX31_RS10905 at 108.955 kb on + strand, within EX31_RS10905 at 108.956 kb on - strand, within EX31_RS10905 at 109.236 kb on + strand, within EX31_RS10905 at 109.236 kb on + strand, within EX31_RS10905 at 109.236 kb on + strand, within EX31_RS10905 at 109.236 kb on + strand, within EX31_RS10905 at 109.236 kb on + strand, within EX31_RS10905 at 109.237 kb on - strand, within EX31_RS10905 at 109.237 kb on - strand, within EX31_RS10905 at 109.237 kb on - strand, within EX31_RS10905 at 109.313 kb on + strand at 109.314 kb on - strand at 109.314 kb on - strand at 109.314 kb on - strand at 109.336 kb on - strand at 109.427 kb on - strand at 109.455 kb on + strand at 109.456 kb on - strand at 109.480 kb on - strand at 109.489 kb on + strand at 109.490 kb on - strand at 109.492 kb on + strand at 109.510 kb on - strand at 109.510 kb on - strand at 109.511 kb on + strand at 109.519 kb on + strand at 109.550 kb on + strand at 109.551 kb on - strand at 109.552 kb on + strand at 109.553 kb on - strand at 109.553 kb on - strand at 109.657 kb on + strand, within EX31_RS10910 at 109.659 kb on + strand, within EX31_RS10910 at 109.659 kb on + strand, within EX31_RS10910 at 109.659 kb on + strand, within EX31_RS10910 at 109.660 kb on - strand, within EX31_RS10910 at 109.660 kb on - strand, within EX31_RS10910 at 109.660 kb on - strand, within EX31_RS10910 at 109.660 kb on - strand, within EX31_RS10910 at 109.696 kb on + strand, within EX31_RS10910 at 109.697 kb on - strand, within EX31_RS10910 at 109.801 kb on + strand, within EX31_RS10910 at 110.137 kb on + strand, within EX31_RS10910 at 110.191 kb on + strand, within EX31_RS10910 at 110.214 kb on + strand, within EX31_RS10910 at 110.404 kb on - strand, within EX31_RS10910
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 106,622 + EX31_RS10900 0.17 +1.2 106,659 + EX31_RS10900 0.21 -0.1 106,705 + EX31_RS10900 0.27 +2.4 106,706 - EX31_RS10900 0.27 +0.3 106,706 - EX31_RS10900 0.27 +0.7 106,706 - EX31_RS10900 0.27 -1.3 106,707 + EX31_RS10900 0.27 +1.6 106,937 + EX31_RS10900 0.54 -1.3 106,937 + EX31_RS10900 0.54 +0.2 106,937 + EX31_RS10900 0.54 -0.3 106,937 + EX31_RS10900 0.54 -2.1 106,937 + EX31_RS10900 0.54 +1.5 106,937 + EX31_RS10900 0.54 +0.1 106,937 + EX31_RS10900 0.54 -0.5 106,938 - EX31_RS10900 0.54 -0.3 106,938 - EX31_RS10900 0.54 -0.0 106,938 - EX31_RS10900 0.54 +0.9 106,938 - EX31_RS10900 0.54 +0.3 106,940 - EX31_RS10900 0.54 +1.0 106,965 + EX31_RS10900 0.57 -0.5 106,965 + EX31_RS10900 0.57 +0.9 106,966 - EX31_RS10900 0.57 +0.4 107,082 + EX31_RS10900 0.71 +2.6 107,167 - EX31_RS10900 0.81 +1.0 107,167 - EX31_RS10900 0.81 +0.5 107,409 + +1.2 107,409 + -0.7 107,686 - +0.7 107,878 + EX31_RS10905 0.16 +0.7 108,084 + EX31_RS10905 0.27 -0.5 108,149 - EX31_RS10905 0.30 +0.3 108,151 + EX31_RS10905 0.31 +0.4 108,151 + EX31_RS10905 0.31 +0.1 108,238 + EX31_RS10905 0.35 +0.8 108,238 + EX31_RS10905 0.35 +1.1 108,284 + EX31_RS10905 0.38 +0.3 108,285 - EX31_RS10905 0.38 +0.9 108,412 + EX31_RS10905 0.45 +1.2 108,444 + EX31_RS10905 0.46 -0.4 108,445 - EX31_RS10905 0.46 -0.7 108,559 + EX31_RS10905 0.53 +1.4 108,559 + EX31_RS10905 0.53 -0.8 108,561 + EX31_RS10905 0.53 +0.1 108,677 - EX31_RS10905 0.59 -0.2 108,677 - EX31_RS10905 0.59 +0.6 108,778 - EX31_RS10905 0.65 -0.9 108,790 + EX31_RS10905 0.65 +0.5 108,830 + EX31_RS10905 0.67 +0.7 108,955 + EX31_RS10905 0.74 -1.6 108,956 - EX31_RS10905 0.74 -0.6 109,236 + EX31_RS10905 0.90 -1.1 109,236 + EX31_RS10905 0.90 -1.9 109,236 + EX31_RS10905 0.90 +0.8 109,236 + EX31_RS10905 0.90 +0.1 109,236 + EX31_RS10905 0.90 +1.0 109,237 - EX31_RS10905 0.90 +0.7 109,237 - EX31_RS10905 0.90 -0.3 109,237 - EX31_RS10905 0.90 -0.0 109,313 + -0.5 109,314 - -1.1 109,314 - -0.7 109,314 - +1.0 109,336 - +0.4 109,427 - +0.3 109,455 + -0.0 109,456 - -0.9 109,480 - -0.8 109,489 + +0.8 109,490 - -0.5 109,492 + -0.5 109,510 - -2.7 109,510 - -0.4 109,511 + -1.8 109,519 + -2.0 109,550 + +0.3 109,551 - -0.6 109,552 + -0.1 109,553 - -1.6 109,553 - -0.3 109,657 + EX31_RS10910 0.16 +0.2 109,659 + EX31_RS10910 0.16 -0.3 109,659 + EX31_RS10910 0.16 +0.1 109,659 + EX31_RS10910 0.16 +0.3 109,660 - EX31_RS10910 0.16 +1.0 109,660 - EX31_RS10910 0.16 +2.5 109,660 - EX31_RS10910 0.16 +0.3 109,660 - EX31_RS10910 0.16 -1.3 109,696 + EX31_RS10910 0.19 +0.4 109,697 - EX31_RS10910 0.19 +0.5 109,801 + EX31_RS10910 0.27 -0.7 110,137 + EX31_RS10910 0.53 -0.9 110,191 + EX31_RS10910 0.57 -1.1 110,214 + EX31_RS10910 0.59 +0.9 110,404 - EX31_RS10910 0.73 +2.4
Or see this region's nucleotide sequence