Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09660 and EX31_RS09665 are separated by 206 nucleotides EX31_RS09665 and EX31_RS09670 are separated by 85 nucleotides EX31_RS09670 and EX31_RS09675 are separated by 161 nucleotides
EX31_RS09660: EX31_RS09660 - aspartate:alanine antiporter, at 133,449 to 135,131
_RS09660
EX31_RS09665: EX31_RS09665 - hypothetical protein, at 135,338 to 135,649
_RS09665
EX31_RS09670: EX31_RS09670 - bleomycin resistance protein, at 135,735 to 136,100
_RS09670
EX31_RS09675: EX31_RS09675 - porin OmpC, at 136,262 to 137,371
_RS09675
Position (kb) 135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.742 kb on - strand, within EX31_RS09660 at 134.753 kb on + strand, within EX31_RS09660 at 134.934 kb on + strand, within EX31_RS09660 at 134.934 kb on + strand, within EX31_RS09660 at 134.934 kb on + strand, within EX31_RS09660 at 134.935 kb on - strand, within EX31_RS09660 at 134.935 kb on - strand, within EX31_RS09660 at 135.064 kb on - strand at 135.079 kb on + strand at 135.079 kb on + strand at 135.080 kb on - strand at 135.080 kb on - strand at 135.082 kb on + strand at 135.082 kb on + strand at 135.105 kb on - strand at 135.225 kb on + strand at 135.327 kb on + strand at 135.328 kb on - strand at 135.392 kb on + strand, within EX31_RS09665 at 135.393 kb on - strand, within EX31_RS09665 at 135.393 kb on - strand, within EX31_RS09665 at 135.418 kb on - strand, within EX31_RS09665 at 135.481 kb on - strand, within EX31_RS09665 at 135.481 kb on - strand, within EX31_RS09665 at 135.873 kb on - strand, within EX31_RS09670 at 136.012 kb on + strand, within EX31_RS09670 at 136.012 kb on + strand, within EX31_RS09670 at 136.013 kb on - strand, within EX31_RS09670 at 136.013 kb on - strand, within EX31_RS09670 at 136.080 kb on - strand at 136.119 kb on - strand at 136.119 kb on - strand at 136.119 kb on - strand at 136.242 kb on - strand at 136.242 kb on - strand at 136.261 kb on - strand at 136.355 kb on - strand at 136.355 kb on - strand at 136.355 kb on - strand at 136.366 kb on - strand at 136.366 kb on - strand at 136.366 kb on - strand at 136.366 kb on - strand at 136.366 kb on - strand at 136.366 kb on - strand at 136.366 kb on - strand at 136.366 kb on - strand at 136.366 kb on - strand at 136.393 kb on - strand, within EX31_RS09675 at 136.393 kb on - strand, within EX31_RS09675 at 136.393 kb on - strand, within EX31_RS09675 at 136.393 kb on - strand, within EX31_RS09675 at 136.404 kb on - strand, within EX31_RS09675 at 136.404 kb on - strand, within EX31_RS09675 at 136.404 kb on - strand, within EX31_RS09675 at 136.404 kb on - strand, within EX31_RS09675 at 136.404 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.414 kb on - strand, within EX31_RS09675 at 136.418 kb on - strand, within EX31_RS09675 at 136.418 kb on - strand, within EX31_RS09675 at 136.438 kb on - strand, within EX31_RS09675 at 136.471 kb on - strand, within EX31_RS09675 at 136.471 kb on - strand, within EX31_RS09675 at 136.471 kb on - strand, within EX31_RS09675 at 136.471 kb on - strand, within EX31_RS09675 at 136.471 kb on - strand, within EX31_RS09675 at 136.471 kb on - strand, within EX31_RS09675 at 136.471 kb on - strand, within EX31_RS09675 at 136.471 kb on - strand, within EX31_RS09675 at 136.471 kb on - strand, within EX31_RS09675 at 136.507 kb on - strand, within EX31_RS09675 at 136.507 kb on - strand, within EX31_RS09675 at 136.507 kb on - strand, within EX31_RS09675 at 136.552 kb on - strand, within EX31_RS09675 at 136.591 kb on - strand, within EX31_RS09675 at 136.603 kb on - strand, within EX31_RS09675 at 136.603 kb on - strand, within EX31_RS09675 at 136.618 kb on - strand, within EX31_RS09675 at 136.618 kb on - strand, within EX31_RS09675 at 136.618 kb on - strand, within EX31_RS09675 at 136.618 kb on - strand, within EX31_RS09675 at 136.618 kb on - strand, within EX31_RS09675 at 136.622 kb on - strand, within EX31_RS09675 at 136.636 kb on - strand, within EX31_RS09675 at 136.636 kb on - strand, within EX31_RS09675 at 136.636 kb on - strand, within EX31_RS09675 at 136.636 kb on - strand, within EX31_RS09675 at 136.636 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.771 kb on - strand, within EX31_RS09675 at 136.829 kb on - strand, within EX31_RS09675 at 136.829 kb on - strand, within EX31_RS09675 at 136.829 kb on - strand, within EX31_RS09675 at 136.829 kb on - strand, within EX31_RS09675 at 136.829 kb on - strand, within EX31_RS09675 at 136.829 kb on - strand, within EX31_RS09675 at 136.861 kb on - strand, within EX31_RS09675 at 136.915 kb on - strand, within EX31_RS09675 at 136.923 kb on - strand, within EX31_RS09675 at 136.923 kb on - strand, within EX31_RS09675 at 136.923 kb on - strand, within EX31_RS09675 at 136.923 kb on - strand, within EX31_RS09675 at 136.963 kb on - strand, within EX31_RS09675 at 136.967 kb on - strand, within EX31_RS09675 at 137.014 kb on - strand, within EX31_RS09675 at 137.014 kb on - strand, within EX31_RS09675 at 137.014 kb on - strand, within EX31_RS09675 at 137.014 kb on - strand, within EX31_RS09675 at 137.014 kb on - strand, within EX31_RS09675 at 137.014 kb on - strand, within EX31_RS09675 at 137.014 kb on - strand, within EX31_RS09675 at 137.030 kb on - strand, within EX31_RS09675 at 137.030 kb on - strand, within EX31_RS09675 at 137.030 kb on - strand, within EX31_RS09675 at 137.030 kb on - strand, within EX31_RS09675
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 134,742 - EX31_RS09660 0.77 -0.8 134,753 + EX31_RS09660 0.77 -0.4 134,934 + EX31_RS09660 0.88 +1.3 134,934 + EX31_RS09660 0.88 -0.1 134,934 + EX31_RS09660 0.88 -0.6 134,935 - EX31_RS09660 0.88 +0.4 134,935 - EX31_RS09660 0.88 +1.5 135,064 - -2.2 135,079 + +0.1 135,079 + -0.1 135,080 - -0.4 135,080 - +1.6 135,082 + -3.2 135,082 + -2.0 135,105 - -0.7 135,225 + -2.1 135,327 + -0.7 135,328 - -1.5 135,392 + EX31_RS09665 0.17 -0.0 135,393 - EX31_RS09665 0.18 +0.8 135,393 - EX31_RS09665 0.18 -1.2 135,418 - EX31_RS09665 0.26 -0.8 135,481 - EX31_RS09665 0.46 +0.4 135,481 - EX31_RS09665 0.46 -0.3 135,873 - EX31_RS09670 0.38 +1.9 136,012 + EX31_RS09670 0.76 +0.7 136,012 + EX31_RS09670 0.76 +1.4 136,013 - EX31_RS09670 0.76 +1.6 136,013 - EX31_RS09670 0.76 -0.9 136,080 - -1.2 136,119 - -2.2 136,119 - -1.2 136,119 - -2.9 136,242 - -0.1 136,242 - -0.3 136,261 - -0.2 136,355 - -0.5 136,355 - -0.8 136,355 - -3.1 136,366 - -1.7 136,366 - -0.2 136,366 - +0.7 136,366 - -0.8 136,366 - +0.5 136,366 - +0.7 136,366 - -0.8 136,366 - -0.4 136,366 - +0.3 136,393 - EX31_RS09675 0.12 +0.2 136,393 - EX31_RS09675 0.12 -0.4 136,393 - EX31_RS09675 0.12 +0.3 136,393 - EX31_RS09675 0.12 +0.0 136,404 - EX31_RS09675 0.13 +0.1 136,404 - EX31_RS09675 0.13 +0.2 136,404 - EX31_RS09675 0.13 +0.7 136,404 - EX31_RS09675 0.13 +1.1 136,404 - EX31_RS09675 0.13 -0.5 136,414 - EX31_RS09675 0.14 +0.2 136,414 - EX31_RS09675 0.14 +0.5 136,414 - EX31_RS09675 0.14 +0.1 136,414 - EX31_RS09675 0.14 +0.0 136,414 - EX31_RS09675 0.14 +0.0 136,414 - EX31_RS09675 0.14 -1.3 136,414 - EX31_RS09675 0.14 +0.7 136,414 - EX31_RS09675 0.14 -0.2 136,414 - EX31_RS09675 0.14 -0.2 136,414 - EX31_RS09675 0.14 -0.8 136,414 - EX31_RS09675 0.14 -1.2 136,414 - EX31_RS09675 0.14 -0.1 136,414 - EX31_RS09675 0.14 -0.7 136,418 - EX31_RS09675 0.14 -0.4 136,418 - EX31_RS09675 0.14 -1.1 136,438 - EX31_RS09675 0.16 +0.3 136,471 - EX31_RS09675 0.19 -1.3 136,471 - EX31_RS09675 0.19 -1.4 136,471 - EX31_RS09675 0.19 +0.2 136,471 - EX31_RS09675 0.19 +0.3 136,471 - EX31_RS09675 0.19 -0.6 136,471 - EX31_RS09675 0.19 -0.0 136,471 - EX31_RS09675 0.19 -1.3 136,471 - EX31_RS09675 0.19 -0.7 136,471 - EX31_RS09675 0.19 +0.4 136,507 - EX31_RS09675 0.22 +0.4 136,507 - EX31_RS09675 0.22 -0.3 136,507 - EX31_RS09675 0.22 -0.0 136,552 - EX31_RS09675 0.26 -0.2 136,591 - EX31_RS09675 0.30 +0.1 136,603 - EX31_RS09675 0.31 +0.6 136,603 - EX31_RS09675 0.31 +0.4 136,618 - EX31_RS09675 0.32 -0.4 136,618 - EX31_RS09675 0.32 +0.3 136,618 - EX31_RS09675 0.32 -0.5 136,618 - EX31_RS09675 0.32 -0.9 136,618 - EX31_RS09675 0.32 +1.3 136,622 - EX31_RS09675 0.32 +0.1 136,636 - EX31_RS09675 0.34 -0.1 136,636 - EX31_RS09675 0.34 +0.4 136,636 - EX31_RS09675 0.34 -0.4 136,636 - EX31_RS09675 0.34 +0.5 136,636 - EX31_RS09675 0.34 -0.2 136,771 - EX31_RS09675 0.46 -0.2 136,771 - EX31_RS09675 0.46 +0.3 136,771 - EX31_RS09675 0.46 -1.7 136,771 - EX31_RS09675 0.46 +0.4 136,771 - EX31_RS09675 0.46 -0.7 136,771 - EX31_RS09675 0.46 +0.3 136,771 - EX31_RS09675 0.46 -1.0 136,771 - EX31_RS09675 0.46 -0.4 136,771 - EX31_RS09675 0.46 +0.7 136,771 - EX31_RS09675 0.46 -0.1 136,771 - EX31_RS09675 0.46 -0.2 136,771 - EX31_RS09675 0.46 -2.7 136,771 - EX31_RS09675 0.46 +0.2 136,829 - EX31_RS09675 0.51 +0.1 136,829 - EX31_RS09675 0.51 -0.3 136,829 - EX31_RS09675 0.51 +0.9 136,829 - EX31_RS09675 0.51 -0.6 136,829 - EX31_RS09675 0.51 +0.2 136,829 - EX31_RS09675 0.51 -0.4 136,861 - EX31_RS09675 0.54 +1.0 136,915 - EX31_RS09675 0.59 -0.3 136,923 - EX31_RS09675 0.60 +0.1 136,923 - EX31_RS09675 0.60 +0.3 136,923 - EX31_RS09675 0.60 +0.8 136,923 - EX31_RS09675 0.60 -0.4 136,963 - EX31_RS09675 0.63 +1.0 136,967 - EX31_RS09675 0.64 +0.2 137,014 - EX31_RS09675 0.68 -1.0 137,014 - EX31_RS09675 0.68 +0.3 137,014 - EX31_RS09675 0.68 +0.3 137,014 - EX31_RS09675 0.68 +0.4 137,014 - EX31_RS09675 0.68 +0.1 137,014 - EX31_RS09675 0.68 -0.2 137,014 - EX31_RS09675 0.68 -0.7 137,030 - EX31_RS09675 0.69 +0.6 137,030 - EX31_RS09675 0.69 -1.8 137,030 - EX31_RS09675 0.69 -0.3 137,030 - EX31_RS09675 0.69 -1.1
Or see this region's nucleotide sequence