Strain Fitness in Rahnella sp. WP5 around EX31_RS09615

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09605 and EX31_RS09610 are separated by 84 nucleotidesEX31_RS09610 and EX31_RS09615 are separated by 67 nucleotidesEX31_RS09615 and EX31_RS09620 overlap by 4 nucleotidesEX31_RS09620 and EX31_RS09625 are separated by 12 nucleotides EX31_RS09605: EX31_RS09605 - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 123,370 to 124,500 _RS09605 EX31_RS09610: EX31_RS09610 - YbjO family protein, at 124,585 to 125,031 _RS09610 EX31_RS09615: EX31_RS09615 - putrescine ABC transporter permease PotI, at 125,099 to 125,944 _RS09615 EX31_RS09620: EX31_RS09620 - putrescine ABC transporter permease PotH, at 125,941 to 126,894 _RS09620 EX31_RS09625: EX31_RS09625 - putrescine ABC transporter ATP-binding subunit PotG, at 126,907 to 128,040 _RS09625 Position (kb) 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1at 124.189 kb on - strand, within EX31_RS09605at 124.289 kb on - strand, within EX31_RS09605at 124.289 kb on - strand, within EX31_RS09605at 124.330 kb on - strand, within EX31_RS09605at 124.436 kb on - strandat 124.439 kb on + strandat 124.484 kb on + strandat 124.484 kb on + strandat 124.485 kb on - strandat 124.575 kb on + strandat 124.575 kb on + strandat 124.576 kb on - strandat 124.576 kb on - strandat 124.576 kb on - strandat 124.576 kb on - strandat 124.587 kb on - strandat 124.628 kb on + strandat 124.628 kb on + strandat 124.628 kb on + strandat 124.628 kb on + strandat 124.629 kb on - strandat 124.629 kb on - strandat 124.629 kb on - strandat 124.708 kb on - strand, within EX31_RS09610at 124.720 kb on - strand, within EX31_RS09610at 124.757 kb on + strand, within EX31_RS09610at 124.758 kb on - strand, within EX31_RS09610at 124.758 kb on - strand, within EX31_RS09610at 124.826 kb on + strand, within EX31_RS09610at 124.827 kb on - strand, within EX31_RS09610at 124.951 kb on + strand, within EX31_RS09610at 124.952 kb on - strand, within EX31_RS09610at 124.952 kb on - strand, within EX31_RS09610at 124.952 kb on - strand, within EX31_RS09610at 124.952 kb on - strand, within EX31_RS09610at 125.016 kb on + strandat 125.032 kb on - strandat 125.032 kb on - strandat 125.155 kb on + strandat 125.156 kb on - strandat 125.329 kb on + strand, within EX31_RS09615at 125.380 kb on + strand, within EX31_RS09615at 125.383 kb on + strand, within EX31_RS09615at 125.383 kb on + strand, within EX31_RS09615at 125.383 kb on + strand, within EX31_RS09615at 125.384 kb on - strand, within EX31_RS09615at 125.484 kb on + strand, within EX31_RS09615at 125.485 kb on - strand, within EX31_RS09615at 125.485 kb on - strand, within EX31_RS09615at 125.485 kb on - strand, within EX31_RS09615at 125.485 kb on - strand, within EX31_RS09615at 125.485 kb on - strand, within EX31_RS09615at 125.485 kb on - strand, within EX31_RS09615at 125.485 kb on - strand, within EX31_RS09615at 125.485 kb on - strand, within EX31_RS09615at 125.485 kb on - strand, within EX31_RS09615at 125.485 kb on - strand, within EX31_RS09615at 125.633 kb on - strand, within EX31_RS09615at 125.788 kb on + strand, within EX31_RS09615at 125.790 kb on + strand, within EX31_RS09615at 125.791 kb on - strand, within EX31_RS09615at 125.791 kb on - strand, within EX31_RS09615at 125.791 kb on - strand, within EX31_RS09615at 125.801 kb on - strand, within EX31_RS09615at 125.847 kb on + strand, within EX31_RS09615at 125.848 kb on - strand, within EX31_RS09615at 125.852 kb on - strand, within EX31_RS09615at 125.902 kb on + strandat 125.903 kb on - strandat 125.991 kb on + strandat 126.090 kb on + strand, within EX31_RS09620at 126.091 kb on - strand, within EX31_RS09620at 126.093 kb on + strand, within EX31_RS09620at 126.094 kb on - strand, within EX31_RS09620at 126.128 kb on + strand, within EX31_RS09620at 126.129 kb on - strand, within EX31_RS09620at 126.129 kb on - strand, within EX31_RS09620at 126.129 kb on - strand, within EX31_RS09620at 126.301 kb on - strand, within EX31_RS09620at 126.311 kb on + strand, within EX31_RS09620at 126.312 kb on - strand, within EX31_RS09620at 126.312 kb on - strand, within EX31_RS09620at 126.332 kb on + strand, within EX31_RS09620at 126.332 kb on + strand, within EX31_RS09620at 126.332 kb on + strand, within EX31_RS09620at 126.333 kb on - strand, within EX31_RS09620at 126.333 kb on - strand, within EX31_RS09620at 126.395 kb on - strand, within EX31_RS09620at 126.399 kb on + strand, within EX31_RS09620at 126.406 kb on + strand, within EX31_RS09620at 126.609 kb on + strand, within EX31_RS09620at 126.611 kb on + strand, within EX31_RS09620at 126.612 kb on - strand, within EX31_RS09620at 126.638 kb on + strand, within EX31_RS09620at 126.639 kb on - strand, within EX31_RS09620at 126.696 kb on + strand, within EX31_RS09620at 126.697 kb on - strand, within EX31_RS09620

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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124,189 - EX31_RS09605 0.72 +0.5
124,289 - EX31_RS09605 0.81 -0.0
124,289 - EX31_RS09605 0.81 -0.4
124,330 - EX31_RS09605 0.85 -0.3
124,436 - +0.5
124,439 + -0.8
124,484 + -1.6
124,484 + +0.9
124,485 - -0.2
124,575 + +0.0
124,575 + -1.5
124,576 - +1.6
124,576 - +1.6
124,576 - -0.3
124,576 - +0.6
124,587 - -0.6
124,628 + +1.6
124,628 + -0.2
124,628 + +1.0
124,628 + -0.3
124,629 - -2.5
124,629 - +0.7
124,629 - -0.3
124,708 - EX31_RS09610 0.28 +0.0
124,720 - EX31_RS09610 0.30 -0.1
124,757 + EX31_RS09610 0.38 +0.3
124,758 - EX31_RS09610 0.39 -0.2
124,758 - EX31_RS09610 0.39 -2.3
124,826 + EX31_RS09610 0.54 +0.6
124,827 - EX31_RS09610 0.54 -2.2
124,951 + EX31_RS09610 0.82 -0.5
124,952 - EX31_RS09610 0.82 -1.5
124,952 - EX31_RS09610 0.82 +1.2
124,952 - EX31_RS09610 0.82 +0.4
124,952 - EX31_RS09610 0.82 -0.1
125,016 + -0.9
125,032 - -0.1
125,032 - +0.9
125,155 + -1.0
125,156 - -0.8
125,329 + EX31_RS09615 0.27 -0.4
125,380 + EX31_RS09615 0.33 -1.1
125,383 + EX31_RS09615 0.34 +0.6
125,383 + EX31_RS09615 0.34 -1.0
125,383 + EX31_RS09615 0.34 -0.0
125,384 - EX31_RS09615 0.34 +0.1
125,484 + EX31_RS09615 0.46 -0.6
125,485 - EX31_RS09615 0.46 -1.5
125,485 - EX31_RS09615 0.46 -0.3
125,485 - EX31_RS09615 0.46 -1.3
125,485 - EX31_RS09615 0.46 +0.4
125,485 - EX31_RS09615 0.46 -1.1
125,485 - EX31_RS09615 0.46 -2.0
125,485 - EX31_RS09615 0.46 +1.5
125,485 - EX31_RS09615 0.46 -2.0
125,485 - EX31_RS09615 0.46 -0.5
125,485 - EX31_RS09615 0.46 +0.0
125,633 - EX31_RS09615 0.63 +0.6
125,788 + EX31_RS09615 0.81 -1.1
125,790 + EX31_RS09615 0.82 -1.3
125,791 - EX31_RS09615 0.82 +0.9
125,791 - EX31_RS09615 0.82 -0.8
125,791 - EX31_RS09615 0.82 +0.6
125,801 - EX31_RS09615 0.83 -0.4
125,847 + EX31_RS09615 0.88 -2.8
125,848 - EX31_RS09615 0.89 -2.7
125,852 - EX31_RS09615 0.89 -0.4
125,902 + -0.2
125,903 - -1.2
125,991 + +0.0
126,090 + EX31_RS09620 0.16 +0.1
126,091 - EX31_RS09620 0.16 +0.5
126,093 + EX31_RS09620 0.16 -0.0
126,094 - EX31_RS09620 0.16 -0.7
126,128 + EX31_RS09620 0.20 +0.6
126,129 - EX31_RS09620 0.20 +1.6
126,129 - EX31_RS09620 0.20 -0.6
126,129 - EX31_RS09620 0.20 +0.1
126,301 - EX31_RS09620 0.38 +0.4
126,311 + EX31_RS09620 0.39 -2.5
126,312 - EX31_RS09620 0.39 +0.1
126,312 - EX31_RS09620 0.39 -0.6
126,332 + EX31_RS09620 0.41 -0.9
126,332 + EX31_RS09620 0.41 -0.2
126,332 + EX31_RS09620 0.41 +0.3
126,333 - EX31_RS09620 0.41 +1.0
126,333 - EX31_RS09620 0.41 -1.1
126,395 - EX31_RS09620 0.48 +1.5
126,399 + EX31_RS09620 0.48 -0.3
126,406 + EX31_RS09620 0.49 +0.4
126,609 + EX31_RS09620 0.70 +0.5
126,611 + EX31_RS09620 0.70 +0.8
126,612 - EX31_RS09620 0.70 -2.1
126,638 + EX31_RS09620 0.73 -0.9
126,639 - EX31_RS09620 0.73 +1.0
126,696 + EX31_RS09620 0.79 -0.5
126,697 - EX31_RS09620 0.79 -0.6

Or see this region's nucleotide sequence