Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09110 and EX31_RS09115 are separated by 22 nucleotides EX31_RS09115 and EX31_RS09120 are separated by 9 nucleotides EX31_RS09120 and EX31_RS09125 are separated by 12 nucleotides
EX31_RS09110: EX31_RS09110 - nitrite reductase small subunit NirD, at 11,756 to 15,931
_RS09110
EX31_RS09115: EX31_RS09115 - ABC transporter ATP-binding protein, at 15,954 to 16,751
_RS09115
EX31_RS09120: EX31_RS09120 - nitrate ABC transporter permease, at 16,761 to 17,675
_RS09120
EX31_RS09125: EX31_RS09125 - ABC transporter substrate-binding protein, at 17,688 to 18,950
_RS09125
Position (kb) 16
17
18 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 15.804 kb on + strand at 15.804 kb on + strand at 15.805 kb on - strand at 15.805 kb on - strand at 16.066 kb on - strand, within EX31_RS09115 at 16.066 kb on - strand, within EX31_RS09115 at 16.117 kb on - strand, within EX31_RS09115 at 16.410 kb on - strand, within EX31_RS09115 at 16.425 kb on - strand, within EX31_RS09115 at 16.425 kb on - strand, within EX31_RS09115 at 16.428 kb on + strand, within EX31_RS09115 at 16.429 kb on - strand, within EX31_RS09115 at 16.539 kb on - strand, within EX31_RS09115 at 16.763 kb on - strand at 16.987 kb on + strand, within EX31_RS09120 at 16.988 kb on - strand, within EX31_RS09120 at 17.086 kb on - strand, within EX31_RS09120 at 17.086 kb on - strand, within EX31_RS09120 at 17.176 kb on - strand, within EX31_RS09120 at 17.188 kb on - strand, within EX31_RS09120 at 17.340 kb on + strand, within EX31_RS09120 at 17.340 kb on + strand, within EX31_RS09120 at 17.554 kb on + strand, within EX31_RS09120 at 17.554 kb on + strand, within EX31_RS09120 at 17.555 kb on - strand, within EX31_RS09120 at 17.654 kb on + strand at 17.655 kb on - strand at 17.716 kb on + strand at 17.717 kb on - strand at 17.824 kb on + strand, within EX31_RS09125 at 17.825 kb on - strand, within EX31_RS09125 at 18.059 kb on - strand, within EX31_RS09125 at 18.059 kb on - strand, within EX31_RS09125 at 18.268 kb on - strand, within EX31_RS09125 at 18.374 kb on + strand, within EX31_RS09125 at 18.375 kb on - strand, within EX31_RS09125 at 18.406 kb on + strand, within EX31_RS09125 at 18.406 kb on + strand, within EX31_RS09125 at 18.406 kb on + strand, within EX31_RS09125 at 18.409 kb on + strand, within EX31_RS09125 at 18.410 kb on - strand, within EX31_RS09125 at 18.410 kb on - strand, within EX31_RS09125 at 18.410 kb on - strand, within EX31_RS09125 at 18.457 kb on + strand, within EX31_RS09125 at 18.458 kb on - strand, within EX31_RS09125 at 18.458 kb on - strand, within EX31_RS09125 at 18.458 kb on - strand, within EX31_RS09125 at 18.558 kb on - strand, within EX31_RS09125 at 18.623 kb on - strand, within EX31_RS09125
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 15,804 + -1.8 15,804 + -0.1 15,805 - -0.1 15,805 - +0.3 16,066 - EX31_RS09115 0.14 -1.1 16,066 - EX31_RS09115 0.14 -1.3 16,117 - EX31_RS09115 0.20 +0.9 16,410 - EX31_RS09115 0.57 -2.3 16,425 - EX31_RS09115 0.59 -0.3 16,425 - EX31_RS09115 0.59 -0.6 16,428 + EX31_RS09115 0.59 +0.5 16,429 - EX31_RS09115 0.60 +0.8 16,539 - EX31_RS09115 0.73 +1.0 16,763 - +0.6 16,987 + EX31_RS09120 0.25 -1.0 16,988 - EX31_RS09120 0.25 -2.7 17,086 - EX31_RS09120 0.36 -0.5 17,086 - EX31_RS09120 0.36 -1.5 17,176 - EX31_RS09120 0.45 -0.5 17,188 - EX31_RS09120 0.47 -0.6 17,340 + EX31_RS09120 0.63 +0.8 17,340 + EX31_RS09120 0.63 -0.7 17,554 + EX31_RS09120 0.87 -1.3 17,554 + EX31_RS09120 0.87 +1.0 17,555 - EX31_RS09120 0.87 -0.9 17,654 + -2.8 17,655 - -0.8 17,716 + +0.8 17,717 - +0.4 17,824 + EX31_RS09125 0.11 +1.6 17,825 - EX31_RS09125 0.11 -0.5 18,059 - EX31_RS09125 0.29 -0.5 18,059 - EX31_RS09125 0.29 +0.5 18,268 - EX31_RS09125 0.46 +0.1 18,374 + EX31_RS09125 0.54 +0.0 18,375 - EX31_RS09125 0.54 +0.9 18,406 + EX31_RS09125 0.57 -1.2 18,406 + EX31_RS09125 0.57 +1.0 18,406 + EX31_RS09125 0.57 -0.5 18,409 + EX31_RS09125 0.57 +0.3 18,410 - EX31_RS09125 0.57 -2.3 18,410 - EX31_RS09125 0.57 +0.8 18,410 - EX31_RS09125 0.57 +0.4 18,457 + EX31_RS09125 0.61 -0.4 18,458 - EX31_RS09125 0.61 -1.0 18,458 - EX31_RS09125 0.61 -1.6 18,458 - EX31_RS09125 0.61 -0.8 18,558 - EX31_RS09125 0.69 -2.0 18,623 - EX31_RS09125 0.74 -0.2
Or see this region's nucleotide sequence