Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07160 and EX31_RS07165 are separated by 192 nucleotides EX31_RS07165 and EX31_RS07170 are separated by 212 nucleotides
EX31_RS07160: EX31_RS07160 - HTH-type transcriptional regulator Cbl, at 227,354 to 228,307
_RS07160
EX31_RS07165: EX31_RS07165 - 2-hydroxyacid dehydrogenase, at 228,500 to 229,444
_RS07165
EX31_RS07170: EX31_RS07170 - glycogen debranching protein GlgX, at 229,657 to 231,939
_RS07170
Position (kb) 228
229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 227.504 kb on - strand, within EX31_RS07160 at 227.516 kb on + strand, within EX31_RS07160 at 227.618 kb on - strand, within EX31_RS07160 at 227.618 kb on - strand, within EX31_RS07160 at 227.718 kb on + strand, within EX31_RS07160 at 227.718 kb on + strand, within EX31_RS07160 at 227.719 kb on - strand, within EX31_RS07160 at 227.719 kb on - strand, within EX31_RS07160 at 227.820 kb on + strand, within EX31_RS07160 at 227.953 kb on - strand, within EX31_RS07160 at 228.165 kb on - strand, within EX31_RS07160 at 228.243 kb on - strand at 228.339 kb on + strand at 228.386 kb on - strand at 228.389 kb on + strand at 228.574 kb on + strand at 228.575 kb on - strand at 228.760 kb on + strand, within EX31_RS07165 at 228.796 kb on + strand, within EX31_RS07165 at 228.944 kb on - strand, within EX31_RS07165 at 229.033 kb on + strand, within EX31_RS07165 at 229.067 kb on + strand, within EX31_RS07165 at 229.067 kb on + strand, within EX31_RS07165 at 229.068 kb on - strand, within EX31_RS07165 at 229.123 kb on + strand, within EX31_RS07165 at 229.124 kb on - strand, within EX31_RS07165 at 229.124 kb on - strand, within EX31_RS07165 at 229.144 kb on + strand, within EX31_RS07165 at 229.145 kb on - strand, within EX31_RS07165 at 229.174 kb on + strand, within EX31_RS07165 at 229.204 kb on + strand, within EX31_RS07165 at 229.205 kb on - strand, within EX31_RS07165 at 229.205 kb on - strand, within EX31_RS07165 at 229.205 kb on - strand, within EX31_RS07165 at 229.275 kb on - strand, within EX31_RS07165 at 229.295 kb on + strand, within EX31_RS07165 at 229.372 kb on + strand at 229.372 kb on + strand at 229.372 kb on + strand at 229.373 kb on - strand at 229.474 kb on - strand at 229.477 kb on + strand at 229.477 kb on + strand at 229.478 kb on - strand at 229.557 kb on - strand at 229.743 kb on + strand at 229.751 kb on + strand at 229.751 kb on + strand at 229.770 kb on + strand at 229.771 kb on - strand at 229.922 kb on + strand, within EX31_RS07170 at 229.922 kb on + strand, within EX31_RS07170 at 229.922 kb on + strand, within EX31_RS07170 at 229.923 kb on - strand, within EX31_RS07170 at 229.923 kb on - strand, within EX31_RS07170 at 229.957 kb on + strand, within EX31_RS07170 at 229.957 kb on + strand, within EX31_RS07170 at 229.958 kb on - strand, within EX31_RS07170 at 229.958 kb on - strand, within EX31_RS07170 at 229.958 kb on - strand, within EX31_RS07170 at 229.983 kb on + strand, within EX31_RS07170 at 229.984 kb on - strand, within EX31_RS07170 at 230.005 kb on + strand, within EX31_RS07170 at 230.035 kb on + strand, within EX31_RS07170 at 230.035 kb on + strand, within EX31_RS07170 at 230.035 kb on + strand, within EX31_RS07170 at 230.035 kb on + strand, within EX31_RS07170 at 230.036 kb on - strand, within EX31_RS07170 at 230.165 kb on - strand, within EX31_RS07170 at 230.283 kb on + strand, within EX31_RS07170 at 230.332 kb on - strand, within EX31_RS07170 at 230.408 kb on - strand, within EX31_RS07170 at 230.408 kb on - strand, within EX31_RS07170 at 230.408 kb on - strand, within EX31_RS07170 at 230.408 kb on - strand, within EX31_RS07170
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 227,504 - EX31_RS07160 0.16 -1.6 227,516 + EX31_RS07160 0.17 +1.7 227,618 - EX31_RS07160 0.28 +1.2 227,618 - EX31_RS07160 0.28 +0.1 227,718 + EX31_RS07160 0.38 -0.6 227,718 + EX31_RS07160 0.38 +0.7 227,719 - EX31_RS07160 0.38 +0.2 227,719 - EX31_RS07160 0.38 -1.2 227,820 + EX31_RS07160 0.49 +0.6 227,953 - EX31_RS07160 0.63 +0.6 228,165 - EX31_RS07160 0.85 +1.1 228,243 - +0.9 228,339 + +0.9 228,386 - -0.7 228,389 + +0.1 228,574 + +0.3 228,575 - +0.9 228,760 + EX31_RS07165 0.28 -0.7 228,796 + EX31_RS07165 0.31 +0.3 228,944 - EX31_RS07165 0.47 +0.6 229,033 + EX31_RS07165 0.56 -0.6 229,067 + EX31_RS07165 0.60 -2.0 229,067 + EX31_RS07165 0.60 -2.1 229,068 - EX31_RS07165 0.60 +0.3 229,123 + EX31_RS07165 0.66 -3.7 229,124 - EX31_RS07165 0.66 -0.2 229,124 - EX31_RS07165 0.66 +0.3 229,144 + EX31_RS07165 0.68 -1.8 229,145 - EX31_RS07165 0.68 -0.8 229,174 + EX31_RS07165 0.71 -1.4 229,204 + EX31_RS07165 0.74 -0.4 229,205 - EX31_RS07165 0.75 -0.5 229,205 - EX31_RS07165 0.75 -0.7 229,205 - EX31_RS07165 0.75 -0.9 229,275 - EX31_RS07165 0.82 +1.0 229,295 + EX31_RS07165 0.84 -1.2 229,372 + +0.1 229,372 + -0.2 229,372 + +0.1 229,373 - +0.7 229,474 - +0.1 229,477 + -2.0 229,477 + -0.5 229,478 - -2.3 229,557 - +1.0 229,743 + -0.5 229,751 + -1.1 229,751 + -1.4 229,770 + -0.0 229,771 - +0.0 229,922 + EX31_RS07170 0.12 +0.8 229,922 + EX31_RS07170 0.12 +1.3 229,922 + EX31_RS07170 0.12 -1.3 229,923 - EX31_RS07170 0.12 +0.9 229,923 - EX31_RS07170 0.12 -1.1 229,957 + EX31_RS07170 0.13 +1.0 229,957 + EX31_RS07170 0.13 +0.5 229,958 - EX31_RS07170 0.13 -0.4 229,958 - EX31_RS07170 0.13 +0.5 229,958 - EX31_RS07170 0.13 +1.4 229,983 + EX31_RS07170 0.14 +1.2 229,984 - EX31_RS07170 0.14 +0.4 230,005 + EX31_RS07170 0.15 +0.3 230,035 + EX31_RS07170 0.17 -1.2 230,035 + EX31_RS07170 0.17 -1.6 230,035 + EX31_RS07170 0.17 +0.2 230,035 + EX31_RS07170 0.17 +0.8 230,036 - EX31_RS07170 0.17 -1.3 230,165 - EX31_RS07170 0.22 +1.2 230,283 + EX31_RS07170 0.27 +0.8 230,332 - EX31_RS07170 0.30 +0.5 230,408 - EX31_RS07170 0.33 +0.2 230,408 - EX31_RS07170 0.33 -0.7 230,408 - EX31_RS07170 0.33 -0.1 230,408 - EX31_RS07170 0.33 +0.3
Or see this region's nucleotide sequence