Strain Fitness in Rahnella sp. WP5 around EX31_RS06835

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06825 and EX31_RS06830 are separated by 38 nucleotidesEX31_RS06830 and EX31_RS06835 are separated by 21 nucleotidesEX31_RS06835 and EX31_RS06840 overlap by 8 nucleotidesEX31_RS06840 and EX31_RS06845 overlap by 8 nucleotides EX31_RS06825: EX31_RS06825 - amino acid ABC transporter ATP-binding protein, at 152,948 to 153,712 _RS06825 EX31_RS06830: EX31_RS06830 - ABC transporter substrate-binding protein, at 153,751 to 154,572 _RS06830 EX31_RS06835: EX31_RS06835 - polysaccharide deacetylase, at 154,594 to 155,448 _RS06835 EX31_RS06840: EX31_RS06840 - polysaccharide deacetylase, at 155,441 to 156,343 _RS06840 EX31_RS06845: EX31_RS06845 - MmgE/PrpD family protein, at 156,336 to 157,691 _RS06845 Position (kb) 154 155 156Strain fitness (log2 ratio) -2 -1 0 1at 153.630 kb on + strand, within EX31_RS06825at 153.631 kb on - strand, within EX31_RS06825at 153.652 kb on + strandat 153.849 kb on + strand, within EX31_RS06830at 154.091 kb on - strand, within EX31_RS06830at 154.093 kb on + strand, within EX31_RS06830at 154.093 kb on + strand, within EX31_RS06830at 154.093 kb on + strand, within EX31_RS06830at 154.114 kb on + strand, within EX31_RS06830at 154.115 kb on - strand, within EX31_RS06830at 154.115 kb on - strand, within EX31_RS06830at 154.115 kb on - strand, within EX31_RS06830at 154.117 kb on - strand, within EX31_RS06830at 154.227 kb on + strand, within EX31_RS06830at 154.227 kb on + strand, within EX31_RS06830at 154.228 kb on - strand, within EX31_RS06830at 154.351 kb on + strand, within EX31_RS06830at 154.378 kb on + strand, within EX31_RS06830at 154.379 kb on - strand, within EX31_RS06830at 154.622 kb on + strandat 154.622 kb on + strandat 154.723 kb on + strand, within EX31_RS06835at 154.886 kb on - strand, within EX31_RS06835at 155.066 kb on - strand, within EX31_RS06835at 155.066 kb on - strand, within EX31_RS06835at 155.076 kb on + strand, within EX31_RS06835at 155.077 kb on - strand, within EX31_RS06835at 155.077 kb on - strand, within EX31_RS06835at 155.098 kb on + strand, within EX31_RS06835at 155.175 kb on + strand, within EX31_RS06835at 155.176 kb on - strand, within EX31_RS06835at 155.182 kb on + strand, within EX31_RS06835at 155.183 kb on - strand, within EX31_RS06835at 155.183 kb on - strand, within EX31_RS06835at 155.214 kb on - strand, within EX31_RS06835at 155.230 kb on + strand, within EX31_RS06835at 155.340 kb on + strand, within EX31_RS06835at 155.341 kb on - strand, within EX31_RS06835at 155.345 kb on + strand, within EX31_RS06835at 155.346 kb on - strand, within EX31_RS06835at 155.346 kb on - strand, within EX31_RS06835at 155.488 kb on + strandat 155.489 kb on - strandat 155.489 kb on - strandat 155.506 kb on + strandat 155.691 kb on + strand, within EX31_RS06840at 155.691 kb on + strand, within EX31_RS06840at 155.691 kb on + strand, within EX31_RS06840at 156.066 kb on - strand, within EX31_RS06840at 156.085 kb on + strand, within EX31_RS06840at 156.085 kb on + strand, within EX31_RS06840at 156.128 kb on + strand, within EX31_RS06840at 156.128 kb on + strand, within EX31_RS06840at 156.129 kb on - strand, within EX31_RS06840at 156.129 kb on - strand, within EX31_RS06840at 156.178 kb on + strand, within EX31_RS06840at 156.178 kb on + strand, within EX31_RS06840at 156.178 kb on + strand, within EX31_RS06840at 156.179 kb on - strand, within EX31_RS06840at 156.200 kb on + strand, within EX31_RS06840at 156.200 kb on + strand, within EX31_RS06840at 156.200 kb on + strand, within EX31_RS06840at 156.200 kb on + strand, within EX31_RS06840at 156.201 kb on - strand, within EX31_RS06840at 156.335 kb on + strandat 156.335 kb on + strandat 156.336 kb on - strandat 156.341 kb on + strandat 156.341 kb on + strandat 156.342 kb on - strandat 156.342 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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153,630 + EX31_RS06825 0.89 -0.7
153,631 - EX31_RS06825 0.89 -0.9
153,652 + +0.3
153,849 + EX31_RS06830 0.12 +0.8
154,091 - EX31_RS06830 0.41 +0.4
154,093 + EX31_RS06830 0.42 -0.9
154,093 + EX31_RS06830 0.42 -1.3
154,093 + EX31_RS06830 0.42 -1.2
154,114 + EX31_RS06830 0.44 -0.4
154,115 - EX31_RS06830 0.44 -1.5
154,115 - EX31_RS06830 0.44 +0.3
154,115 - EX31_RS06830 0.44 -0.1
154,117 - EX31_RS06830 0.45 -0.3
154,227 + EX31_RS06830 0.58 -0.0
154,227 + EX31_RS06830 0.58 -1.8
154,228 - EX31_RS06830 0.58 +0.1
154,351 + EX31_RS06830 0.73 -0.0
154,378 + EX31_RS06830 0.76 +0.8
154,379 - EX31_RS06830 0.76 -1.6
154,622 + +0.0
154,622 + +0.3
154,723 + EX31_RS06835 0.15 +0.9
154,886 - EX31_RS06835 0.34 +1.2
155,066 - EX31_RS06835 0.55 -0.2
155,066 - EX31_RS06835 0.55 +0.4
155,076 + EX31_RS06835 0.56 +0.5
155,077 - EX31_RS06835 0.56 +0.8
155,077 - EX31_RS06835 0.56 -0.1
155,098 + EX31_RS06835 0.59 +0.9
155,175 + EX31_RS06835 0.68 +0.7
155,176 - EX31_RS06835 0.68 +1.2
155,182 + EX31_RS06835 0.69 +0.7
155,183 - EX31_RS06835 0.69 +0.8
155,183 - EX31_RS06835 0.69 -0.7
155,214 - EX31_RS06835 0.73 -0.9
155,230 + EX31_RS06835 0.74 +0.8
155,340 + EX31_RS06835 0.87 -1.0
155,341 - EX31_RS06835 0.87 -0.0
155,345 + EX31_RS06835 0.88 -0.8
155,346 - EX31_RS06835 0.88 -0.2
155,346 - EX31_RS06835 0.88 -0.9
155,488 + -1.7
155,489 - +0.2
155,489 - -1.2
155,506 + -0.4
155,691 + EX31_RS06840 0.28 +0.5
155,691 + EX31_RS06840 0.28 -0.2
155,691 + EX31_RS06840 0.28 +0.9
156,066 - EX31_RS06840 0.69 +0.6
156,085 + EX31_RS06840 0.71 +0.7
156,085 + EX31_RS06840 0.71 -0.7
156,128 + EX31_RS06840 0.76 -0.2
156,128 + EX31_RS06840 0.76 -2.0
156,129 - EX31_RS06840 0.76 +0.4
156,129 - EX31_RS06840 0.76 -0.3
156,178 + EX31_RS06840 0.82 +1.0
156,178 + EX31_RS06840 0.82 -0.4
156,178 + EX31_RS06840 0.82 -0.0
156,179 - EX31_RS06840 0.82 -0.2
156,200 + EX31_RS06840 0.84 +0.2
156,200 + EX31_RS06840 0.84 -0.5
156,200 + EX31_RS06840 0.84 -1.2
156,200 + EX31_RS06840 0.84 +1.5
156,201 - EX31_RS06840 0.84 +0.8
156,335 + -0.9
156,335 + -2.3
156,336 - +0.7
156,341 + +0.5
156,341 + -1.5
156,342 - -1.3
156,342 - +0.6

Or see this region's nucleotide sequence