Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06720 and EX31_RS06725 are separated by 170 nucleotides EX31_RS06725 and EX31_RS06730 are separated by 249 nucleotides
EX31_RS06720: EX31_RS06720 - imidazolonepropionase, at 128,458 to 129,720
_RS06720
EX31_RS06725: EX31_RS06725 - histidine utilization repressor, at 129,891 to 130,709
_RS06725
EX31_RS06730: EX31_RS06730 - formimidoylglutamate deiminase, at 130,959 to 132,332
_RS06730
Position (kb) 129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 128.969 kb on - strand, within EX31_RS06720 at 129.003 kb on + strand, within EX31_RS06720 at 129.098 kb on - strand, within EX31_RS06720 at 129.120 kb on + strand, within EX31_RS06720 at 129.121 kb on - strand, within EX31_RS06720 at 129.121 kb on - strand, within EX31_RS06720 at 129.122 kb on + strand, within EX31_RS06720 at 129.122 kb on + strand, within EX31_RS06720 at 129.123 kb on - strand, within EX31_RS06720 at 129.123 kb on - strand, within EX31_RS06720 at 129.248 kb on - strand, within EX31_RS06720 at 129.271 kb on - strand, within EX31_RS06720 at 129.311 kb on - strand, within EX31_RS06720 at 129.311 kb on - strand, within EX31_RS06720 at 129.474 kb on + strand, within EX31_RS06720 at 129.621 kb on - strand at 129.661 kb on + strand at 129.661 kb on + strand at 129.661 kb on + strand at 129.662 kb on - strand at 129.662 kb on - strand at 129.759 kb on - strand at 129.769 kb on + strand at 129.820 kb on + strand at 129.876 kb on + strand at 129.919 kb on - strand at 129.919 kb on - strand at 129.941 kb on - strand at 130.108 kb on + strand, within EX31_RS06725 at 130.108 kb on + strand, within EX31_RS06725 at 130.109 kb on - strand, within EX31_RS06725 at 130.109 kb on - strand, within EX31_RS06725 at 130.109 kb on - strand, within EX31_RS06725 at 130.109 kb on - strand, within EX31_RS06725 at 130.109 kb on - strand, within EX31_RS06725 at 130.109 kb on - strand, within EX31_RS06725 at 130.109 kb on - strand, within EX31_RS06725 at 130.113 kb on - strand, within EX31_RS06725 at 130.113 kb on - strand, within EX31_RS06725 at 130.113 kb on - strand, within EX31_RS06725 at 130.113 kb on - strand, within EX31_RS06725 at 130.148 kb on - strand, within EX31_RS06725 at 130.211 kb on - strand, within EX31_RS06725 at 130.229 kb on - strand, within EX31_RS06725 at 130.229 kb on - strand, within EX31_RS06725 at 130.583 kb on - strand, within EX31_RS06725 at 130.598 kb on + strand, within EX31_RS06725 at 130.709 kb on + strand at 130.709 kb on + strand at 130.710 kb on - strand at 130.710 kb on - strand at 130.710 kb on - strand at 130.710 kb on - strand at 130.710 kb on - strand at 130.710 kb on - strand at 130.717 kb on - strand at 130.742 kb on + strand at 130.742 kb on + strand at 130.816 kb on + strand at 130.847 kb on + strand at 130.864 kb on + strand at 130.865 kb on - strand at 130.868 kb on + strand at 130.868 kb on + strand at 130.868 kb on + strand at 130.869 kb on - strand at 130.869 kb on - strand at 130.869 kb on - strand at 130.869 kb on - strand at 130.869 kb on - strand at 130.869 kb on - strand at 130.870 kb on + strand at 130.871 kb on - strand at 130.871 kb on - strand at 130.874 kb on + strand at 130.874 kb on + strand at 130.875 kb on - strand at 130.924 kb on + strand at 130.925 kb on - strand at 130.925 kb on - strand at 130.936 kb on + strand at 131.214 kb on + strand, within EX31_RS06730 at 131.214 kb on + strand, within EX31_RS06730 at 131.215 kb on - strand, within EX31_RS06730 at 131.271 kb on + strand, within EX31_RS06730 at 131.271 kb on + strand, within EX31_RS06730 at 131.272 kb on - strand, within EX31_RS06730 at 131.272 kb on - strand, within EX31_RS06730 at 131.272 kb on - strand, within EX31_RS06730 at 131.272 kb on - strand, within EX31_RS06730 at 131.272 kb on - strand, within EX31_RS06730 at 131.320 kb on - strand, within EX31_RS06730 at 131.349 kb on + strand, within EX31_RS06730 at 131.486 kb on + strand, within EX31_RS06730 at 131.505 kb on + strand, within EX31_RS06730 at 131.505 kb on + strand, within EX31_RS06730 at 131.506 kb on - strand, within EX31_RS06730 at 131.652 kb on - strand, within EX31_RS06730 at 131.652 kb on - strand, within EX31_RS06730 at 131.658 kb on - strand, within EX31_RS06730
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 128,969 - EX31_RS06720 0.40 -2.8 129,003 + EX31_RS06720 0.43 +0.1 129,098 - EX31_RS06720 0.51 -1.7 129,120 + EX31_RS06720 0.52 -0.6 129,121 - EX31_RS06720 0.52 +0.1 129,121 - EX31_RS06720 0.52 -0.4 129,122 + EX31_RS06720 0.53 -0.0 129,122 + EX31_RS06720 0.53 +0.3 129,123 - EX31_RS06720 0.53 -3.0 129,123 - EX31_RS06720 0.53 -0.4 129,248 - EX31_RS06720 0.63 -0.2 129,271 - EX31_RS06720 0.64 -0.7 129,311 - EX31_RS06720 0.68 +0.2 129,311 - EX31_RS06720 0.68 +0.0 129,474 + EX31_RS06720 0.80 +0.5 129,621 - -3.0 129,661 + -0.1 129,661 + +0.1 129,661 + -0.6 129,662 - -0.4 129,662 - -0.8 129,759 - +0.7 129,769 + -0.6 129,820 + -0.5 129,876 + -0.1 129,919 - +0.7 129,919 - +0.9 129,941 - -1.1 130,108 + EX31_RS06725 0.26 -1.7 130,108 + EX31_RS06725 0.26 -0.2 130,109 - EX31_RS06725 0.27 -0.6 130,109 - EX31_RS06725 0.27 +0.7 130,109 - EX31_RS06725 0.27 -2.1 130,109 - EX31_RS06725 0.27 -1.4 130,109 - EX31_RS06725 0.27 -0.6 130,109 - EX31_RS06725 0.27 -0.8 130,109 - EX31_RS06725 0.27 -0.4 130,113 - EX31_RS06725 0.27 -0.7 130,113 - EX31_RS06725 0.27 -0.6 130,113 - EX31_RS06725 0.27 -0.3 130,113 - EX31_RS06725 0.27 -1.5 130,148 - EX31_RS06725 0.31 -0.6 130,211 - EX31_RS06725 0.39 -1.5 130,229 - EX31_RS06725 0.41 +0.2 130,229 - EX31_RS06725 0.41 +0.9 130,583 - EX31_RS06725 0.84 -2.2 130,598 + EX31_RS06725 0.86 -0.4 130,709 + +0.3 130,709 + -0.8 130,710 - +1.1 130,710 - +0.4 130,710 - +1.3 130,710 - -0.5 130,710 - -1.4 130,710 - -0.0 130,717 - -0.6 130,742 + -0.8 130,742 + -0.6 130,816 + +0.3 130,847 + +0.2 130,864 + -0.7 130,865 - +0.5 130,868 + +1.1 130,868 + +0.6 130,868 + +1.1 130,869 - +0.7 130,869 - +0.4 130,869 - +0.3 130,869 - +1.1 130,869 - -1.5 130,869 - -0.1 130,870 + -0.1 130,871 - -0.0 130,871 - +0.2 130,874 + +0.1 130,874 + +0.8 130,875 - +1.1 130,924 + +0.2 130,925 - +0.7 130,925 - +0.5 130,936 + +0.3 131,214 + EX31_RS06730 0.19 -0.9 131,214 + EX31_RS06730 0.19 -1.3 131,215 - EX31_RS06730 0.19 -0.4 131,271 + EX31_RS06730 0.23 +2.0 131,271 + EX31_RS06730 0.23 -0.3 131,272 - EX31_RS06730 0.23 -1.8 131,272 - EX31_RS06730 0.23 -0.0 131,272 - EX31_RS06730 0.23 -0.7 131,272 - EX31_RS06730 0.23 +0.3 131,272 - EX31_RS06730 0.23 -0.1 131,320 - EX31_RS06730 0.26 -1.2 131,349 + EX31_RS06730 0.28 -1.0 131,486 + EX31_RS06730 0.38 -1.7 131,505 + EX31_RS06730 0.40 +0.7 131,505 + EX31_RS06730 0.40 -0.0 131,506 - EX31_RS06730 0.40 +0.7 131,652 - EX31_RS06730 0.50 -0.5 131,652 - EX31_RS06730 0.50 -0.7 131,658 - EX31_RS06730 0.51 -0.3
Or see this region's nucleotide sequence