Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06585 and EX31_RS06590 are separated by 637 nucleotides EX31_RS06590 and EX31_RS06595 overlap by 8 nucleotides EX31_RS06595 and EX31_RS06600 overlap by 8 nucleotides
EX31_RS06585: EX31_RS06585 - DUF2501 domain-containing protein, at 92,849 to 93,346
_RS06585
EX31_RS06590: EX31_RS06590 - endonuclease III, at 93,984 to 94,622
_RS06590
EX31_RS06595: EX31_RS06595 - electron transport complex subunit E, at 94,615 to 95,313
_RS06595
EX31_RS06600: EX31_RS06600 - electron transport complex subunit RsxG, at 95,306 to 95,938
_RS06600
Position (kb) 93
94
95 Strain fitness (log2 ratio) -2
-1
0
1 at 93.108 kb on + strand, within EX31_RS06585 at 93.108 kb on + strand, within EX31_RS06585 at 93.108 kb on + strand, within EX31_RS06585 at 93.340 kb on + strand at 93.552 kb on - strand at 93.630 kb on - strand at 93.916 kb on - strand at 93.916 kb on - strand at 93.949 kb on - strand at 93.959 kb on - strand at 93.959 kb on - strand at 94.008 kb on - strand at 94.067 kb on + strand, within EX31_RS06590 at 94.068 kb on - strand, within EX31_RS06590 at 94.203 kb on - strand, within EX31_RS06590 at 94.252 kb on - strand, within EX31_RS06590 at 94.252 kb on - strand, within EX31_RS06590 at 94.252 kb on - strand, within EX31_RS06590 at 94.352 kb on + strand, within EX31_RS06590 at 94.400 kb on - strand, within EX31_RS06590 at 94.400 kb on - strand, within EX31_RS06590 at 94.400 kb on - strand, within EX31_RS06590 at 94.400 kb on - strand, within EX31_RS06590 at 94.400 kb on - strand, within EX31_RS06590 at 94.460 kb on - strand, within EX31_RS06590 at 94.513 kb on - strand, within EX31_RS06590 at 94.513 kb on - strand, within EX31_RS06590 at 94.513 kb on - strand, within EX31_RS06590 at 95.046 kb on - strand, within EX31_RS06595 at 95.046 kb on - strand, within EX31_RS06595 at 95.100 kb on - strand, within EX31_RS06595 at 95.133 kb on + strand, within EX31_RS06595 at 95.179 kb on - strand, within EX31_RS06595 at 95.269 kb on - strand at 95.385 kb on - strand, within EX31_RS06600 at 95.410 kb on + strand, within EX31_RS06600 at 95.411 kb on - strand, within EX31_RS06600 at 95.441 kb on - strand, within EX31_RS06600 at 95.587 kb on - strand, within EX31_RS06600 at 95.587 kb on - strand, within EX31_RS06600
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 93,108 + EX31_RS06585 0.52 +0.8 93,108 + EX31_RS06585 0.52 -2.3 93,108 + EX31_RS06585 0.52 -0.6 93,340 + +0.3 93,552 - -0.4 93,630 - +0.6 93,916 - +0.4 93,916 - -0.7 93,949 - -0.7 93,959 - -0.2 93,959 - -0.4 94,008 - +0.6 94,067 + EX31_RS06590 0.13 +0.1 94,068 - EX31_RS06590 0.13 -0.4 94,203 - EX31_RS06590 0.34 -0.4 94,252 - EX31_RS06590 0.42 -0.2 94,252 - EX31_RS06590 0.42 -1.4 94,252 - EX31_RS06590 0.42 -0.6 94,352 + EX31_RS06590 0.58 +0.1 94,400 - EX31_RS06590 0.65 -1.6 94,400 - EX31_RS06590 0.65 -1.7 94,400 - EX31_RS06590 0.65 -0.4 94,400 - EX31_RS06590 0.65 +0.0 94,400 - EX31_RS06590 0.65 -2.6 94,460 - EX31_RS06590 0.74 +0.4 94,513 - EX31_RS06590 0.83 -2.6 94,513 - EX31_RS06590 0.83 -1.6 94,513 - EX31_RS06590 0.83 +0.4 95,046 - EX31_RS06595 0.62 +0.9 95,046 - EX31_RS06595 0.62 +0.9 95,100 - EX31_RS06595 0.69 -0.1 95,133 + EX31_RS06595 0.74 -0.3 95,179 - EX31_RS06595 0.81 -1.3 95,269 - -0.0 95,385 - EX31_RS06600 0.12 +0.6 95,410 + EX31_RS06600 0.16 -0.6 95,411 - EX31_RS06600 0.17 -2.3 95,441 - EX31_RS06600 0.21 -1.5 95,587 - EX31_RS06600 0.44 -1.5 95,587 - EX31_RS06600 0.44 +0.6
Or see this region's nucleotide sequence