Strain Fitness in Rahnella sp. WP5 around EX31_RS06380

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06375 and EX31_RS06380 are separated by 543 nucleotidesEX31_RS06380 and EX31_RS06385 are separated by 32 nucleotidesEX31_RS06385 and EX31_RS06390 are separated by 117 nucleotides EX31_RS06375: EX31_RS06375 - tRNA 2-thiocytidine(32) synthetase TtcA, at 38,824 to 39,759 _RS06375 EX31_RS06380: EX31_RS06380 - YgdI/YgdR family lipoprotein, at 40,303 to 40,536 _RS06380 EX31_RS06385: EX31_RS06385 - YgdI/YgdR family lipoprotein, at 40,569 to 40,811 _RS06385 EX31_RS06390: EX31_RS06390 - transporter, at 40,929 to 42,728 _RS06390 Position (kb) 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 39.333 kb on + strand, within EX31_RS06375at 39.438 kb on - strand, within EX31_RS06375at 39.438 kb on - strand, within EX31_RS06375at 39.438 kb on - strand, within EX31_RS06375at 39.438 kb on - strand, within EX31_RS06375at 39.438 kb on - strand, within EX31_RS06375at 39.459 kb on + strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.462 kb on - strand, within EX31_RS06375at 39.462 kb on - strand, within EX31_RS06375at 39.486 kb on - strand, within EX31_RS06375at 39.602 kb on + strand, within EX31_RS06375at 39.602 kb on + strand, within EX31_RS06375at 39.603 kb on - strand, within EX31_RS06375at 39.603 kb on - strand, within EX31_RS06375at 39.603 kb on - strand, within EX31_RS06375at 39.722 kb on + strandat 39.865 kb on + strandat 39.866 kb on - strandat 39.920 kb on - strandat 39.925 kb on - strandat 40.024 kb on + strandat 40.025 kb on - strandat 40.070 kb on + strandat 40.071 kb on - strandat 40.071 kb on - strandat 40.116 kb on + strandat 40.116 kb on + strandat 40.121 kb on + strandat 40.205 kb on - strandat 40.216 kb on + strandat 40.249 kb on + strandat 40.249 kb on + strandat 40.249 kb on + strandat 40.249 kb on + strandat 40.250 kb on - strandat 40.250 kb on - strandat 40.253 kb on + strandat 40.253 kb on + strandat 40.253 kb on + strandat 40.253 kb on + strandat 40.253 kb on + strandat 40.254 kb on - strandat 40.254 kb on - strandat 40.254 kb on - strandat 40.254 kb on - strandat 40.254 kb on - strandat 40.259 kb on + strandat 40.274 kb on + strandat 40.302 kb on + strandat 40.343 kb on + strand, within EX31_RS06380at 40.374 kb on + strand, within EX31_RS06380at 40.374 kb on + strand, within EX31_RS06380at 40.375 kb on - strand, within EX31_RS06380at 40.386 kb on + strand, within EX31_RS06380at 40.392 kb on + strand, within EX31_RS06380at 40.423 kb on - strand, within EX31_RS06380at 40.433 kb on + strand, within EX31_RS06380at 40.433 kb on + strand, within EX31_RS06380at 40.459 kb on + strand, within EX31_RS06380at 40.459 kb on + strand, within EX31_RS06380at 40.459 kb on + strand, within EX31_RS06380at 40.792 kb on + strandat 40.809 kb on + strandat 40.810 kb on - strandat 40.822 kb on + strandat 40.822 kb on + strandat 40.959 kb on + strandat 41.013 kb on + strandat 41.014 kb on - strandat 41.116 kb on + strand, within EX31_RS06390at 41.116 kb on + strand, within EX31_RS06390at 41.116 kb on + strand, within EX31_RS06390at 41.116 kb on + strand, within EX31_RS06390at 41.116 kb on + strand, within EX31_RS06390at 41.116 kb on + strand, within EX31_RS06390at 41.117 kb on - strand, within EX31_RS06390at 41.117 kb on - strand, within EX31_RS06390at 41.117 kb on - strand, within EX31_RS06390at 41.117 kb on - strand, within EX31_RS06390at 41.182 kb on + strand, within EX31_RS06390at 41.183 kb on - strand, within EX31_RS06390at 41.404 kb on + strand, within EX31_RS06390at 41.404 kb on + strand, within EX31_RS06390at 41.404 kb on + strand, within EX31_RS06390at 41.404 kb on + strand, within EX31_RS06390at 41.404 kb on + strand, within EX31_RS06390at 41.404 kb on + strand, within EX31_RS06390at 41.405 kb on - strand, within EX31_RS06390at 41.405 kb on - strand, within EX31_RS06390at 41.405 kb on - strand, within EX31_RS06390at 41.405 kb on - strand, within EX31_RS06390at 41.425 kb on - strand, within EX31_RS06390at 41.427 kb on + strand, within EX31_RS06390

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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39,333 + EX31_RS06375 0.54 +0.2
39,438 - EX31_RS06375 0.66 -0.7
39,438 - EX31_RS06375 0.66 +0.7
39,438 - EX31_RS06375 0.66 -0.8
39,438 - EX31_RS06375 0.66 +0.5
39,438 - EX31_RS06375 0.66 +0.5
39,459 + EX31_RS06375 0.68 -1.3
39,460 - EX31_RS06375 0.68 +0.4
39,460 - EX31_RS06375 0.68 -0.8
39,460 - EX31_RS06375 0.68 -0.8
39,460 - EX31_RS06375 0.68 +0.0
39,460 - EX31_RS06375 0.68 -1.7
39,460 - EX31_RS06375 0.68 -0.6
39,460 - EX31_RS06375 0.68 -0.7
39,460 - EX31_RS06375 0.68 -0.5
39,462 - EX31_RS06375 0.68 -0.6
39,462 - EX31_RS06375 0.68 -0.1
39,486 - EX31_RS06375 0.71 -2.1
39,602 + EX31_RS06375 0.83 +0.0
39,602 + EX31_RS06375 0.83 -2.1
39,603 - EX31_RS06375 0.83 -0.1
39,603 - EX31_RS06375 0.83 -3.7
39,603 - EX31_RS06375 0.83 -0.9
39,722 + +0.5
39,865 + -0.6
39,866 - +0.6
39,920 - -0.4
39,925 - +0.8
40,024 + -0.6
40,025 - -0.1
40,070 + -0.7
40,071 - +1.2
40,071 - +0.1
40,116 + -0.7
40,116 + +0.7
40,121 + +0.1
40,205 - +1.3
40,216 + +0.8
40,249 + -0.4
40,249 + +2.2
40,249 + -1.5
40,249 + +0.4
40,250 - +0.1
40,250 - -1.9
40,253 + -0.9
40,253 + +2.5
40,253 + +0.1
40,253 + -0.8
40,253 + -0.5
40,254 - +1.2
40,254 - +1.5
40,254 - -1.4
40,254 - -1.9
40,254 - +0.7
40,259 + -0.1
40,274 + -0.6
40,302 + +0.2
40,343 + EX31_RS06380 0.17 +0.6
40,374 + EX31_RS06380 0.30 -0.6
40,374 + EX31_RS06380 0.30 -0.6
40,375 - EX31_RS06380 0.31 +0.1
40,386 + EX31_RS06380 0.35 +0.4
40,392 + EX31_RS06380 0.38 -1.5
40,423 - EX31_RS06380 0.51 -0.3
40,433 + EX31_RS06380 0.56 -1.3
40,433 + EX31_RS06380 0.56 +0.3
40,459 + EX31_RS06380 0.67 -0.2
40,459 + EX31_RS06380 0.67 -0.0
40,459 + EX31_RS06380 0.67 -1.7
40,792 + -0.0
40,809 + +0.8
40,810 - +0.2
40,822 + +0.4
40,822 + -1.3
40,959 + +0.3
41,013 + +0.9
41,014 - -1.4
41,116 + EX31_RS06390 0.10 -1.4
41,116 + EX31_RS06390 0.10 -0.5
41,116 + EX31_RS06390 0.10 -0.0
41,116 + EX31_RS06390 0.10 +0.6
41,116 + EX31_RS06390 0.10 -2.0
41,116 + EX31_RS06390 0.10 -0.8
41,117 - EX31_RS06390 0.10 -0.6
41,117 - EX31_RS06390 0.10 -0.1
41,117 - EX31_RS06390 0.10 +0.6
41,117 - EX31_RS06390 0.10 +0.2
41,182 + EX31_RS06390 0.14 -0.2
41,183 - EX31_RS06390 0.14 -2.6
41,404 + EX31_RS06390 0.26 -0.4
41,404 + EX31_RS06390 0.26 +0.8
41,404 + EX31_RS06390 0.26 -0.7
41,404 + EX31_RS06390 0.26 +0.2
41,404 + EX31_RS06390 0.26 +0.2
41,404 + EX31_RS06390 0.26 -0.2
41,405 - EX31_RS06390 0.26 -2.2
41,405 - EX31_RS06390 0.26 -0.9
41,405 - EX31_RS06390 0.26 -1.0
41,405 - EX31_RS06390 0.26 +0.3
41,425 - EX31_RS06390 0.28 -1.3
41,427 + EX31_RS06390 0.28 +0.5

Or see this region's nucleotide sequence