Strain Fitness in Rahnella sp. WP5 around EX31_RS06365

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06360 and EX31_RS06365 are separated by 79 nucleotidesEX31_RS06365 and EX31_RS06370 are separated by 283 nucleotides EX31_RS06360: EX31_RS06360 - LysR family transcriptional regulator, at 35,805 to 36,740 _RS06360 EX31_RS06365: EX31_RS06365 - zinc transporter ZntB, at 36,820 to 37,803 _RS06365 EX31_RS06370: EX31_RS06370 - hypothetical protein, at 38,087 to 38,764 _RS06370 Position (kb) 36 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 35.828 kb on + strandat 35.864 kb on + strandat 35.864 kb on + strandat 35.865 kb on - strandat 36.025 kb on - strand, within EX31_RS06360at 36.025 kb on - strand, within EX31_RS06360at 36.040 kb on + strand, within EX31_RS06360at 36.076 kb on + strand, within EX31_RS06360at 36.076 kb on + strand, within EX31_RS06360at 36.076 kb on + strand, within EX31_RS06360at 36.076 kb on + strand, within EX31_RS06360at 36.172 kb on + strand, within EX31_RS06360at 36.242 kb on + strand, within EX31_RS06360at 36.317 kb on + strand, within EX31_RS06360at 36.317 kb on + strand, within EX31_RS06360at 36.317 kb on + strand, within EX31_RS06360at 36.318 kb on - strand, within EX31_RS06360at 36.318 kb on - strand, within EX31_RS06360at 36.318 kb on - strand, within EX31_RS06360at 36.408 kb on + strand, within EX31_RS06360at 36.425 kb on + strand, within EX31_RS06360at 36.425 kb on + strand, within EX31_RS06360at 36.496 kb on + strand, within EX31_RS06360at 36.496 kb on + strand, within EX31_RS06360at 36.496 kb on + strand, within EX31_RS06360at 36.497 kb on - strand, within EX31_RS06360at 36.498 kb on + strand, within EX31_RS06360at 36.498 kb on + strand, within EX31_RS06360at 36.498 kb on + strand, within EX31_RS06360at 36.498 kb on + strand, within EX31_RS06360at 36.499 kb on - strand, within EX31_RS06360at 36.509 kb on + strand, within EX31_RS06360at 36.509 kb on + strand, within EX31_RS06360at 36.587 kb on - strand, within EX31_RS06360at 36.595 kb on + strand, within EX31_RS06360at 36.598 kb on + strand, within EX31_RS06360at 36.646 kb on - strand, within EX31_RS06360at 36.752 kb on + strandat 36.775 kb on - strandat 36.787 kb on - strandat 36.866 kb on - strandat 36.933 kb on + strand, within EX31_RS06365at 36.933 kb on + strand, within EX31_RS06365at 36.994 kb on - strand, within EX31_RS06365at 37.056 kb on + strand, within EX31_RS06365at 37.104 kb on + strand, within EX31_RS06365at 37.104 kb on + strand, within EX31_RS06365at 37.417 kb on + strand, within EX31_RS06365at 37.417 kb on + strand, within EX31_RS06365at 37.417 kb on + strand, within EX31_RS06365at 37.418 kb on - strand, within EX31_RS06365at 37.418 kb on - strand, within EX31_RS06365at 37.560 kb on + strand, within EX31_RS06365at 37.621 kb on + strand, within EX31_RS06365at 37.621 kb on + strand, within EX31_RS06365at 37.621 kb on + strand, within EX31_RS06365at 37.710 kb on + strandat 37.801 kb on + strandat 37.801 kb on + strandat 37.810 kb on - strandat 37.845 kb on + strandat 37.846 kb on - strandat 37.866 kb on + strandat 37.876 kb on + strandat 37.877 kb on - strandat 37.883 kb on + strandat 37.911 kb on + strandat 37.912 kb on - strandat 37.957 kb on + strandat 37.957 kb on + strandat 37.961 kb on + strandat 37.961 kb on + strandat 37.961 kb on + strandat 37.983 kb on + strandat 37.984 kb on - strandat 37.984 kb on - strandat 38.072 kb on + strandat 38.357 kb on + strand, within EX31_RS06370at 38.357 kb on + strand, within EX31_RS06370at 38.358 kb on - strand, within EX31_RS06370at 38.358 kb on - strand, within EX31_RS06370at 38.358 kb on - strand, within EX31_RS06370at 38.414 kb on + strand, within EX31_RS06370at 38.415 kb on - strand, within EX31_RS06370at 38.415 kb on - strand, within EX31_RS06370at 38.627 kb on + strand, within EX31_RS06370at 38.628 kb on - strand, within EX31_RS06370at 38.639 kb on + strand, within EX31_RS06370at 38.732 kb on + strandat 38.732 kb on + strandat 38.793 kb on - strandat 38.795 kb on - strandat 38.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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35,828 + -0.2
35,864 + -1.0
35,864 + -0.1
35,865 - +0.9
36,025 - EX31_RS06360 0.24 +0.1
36,025 - EX31_RS06360 0.24 +0.8
36,040 + EX31_RS06360 0.25 -1.0
36,076 + EX31_RS06360 0.29 -0.9
36,076 + EX31_RS06360 0.29 -0.1
36,076 + EX31_RS06360 0.29 +0.4
36,076 + EX31_RS06360 0.29 -0.4
36,172 + EX31_RS06360 0.39 -0.7
36,242 + EX31_RS06360 0.47 +0.9
36,317 + EX31_RS06360 0.55 -0.1
36,317 + EX31_RS06360 0.55 +0.2
36,317 + EX31_RS06360 0.55 +0.6
36,318 - EX31_RS06360 0.55 -0.3
36,318 - EX31_RS06360 0.55 -0.5
36,318 - EX31_RS06360 0.55 +0.2
36,408 + EX31_RS06360 0.64 +0.7
36,425 + EX31_RS06360 0.66 +0.2
36,425 + EX31_RS06360 0.66 +0.3
36,496 + EX31_RS06360 0.74 -0.5
36,496 + EX31_RS06360 0.74 +0.0
36,496 + EX31_RS06360 0.74 +0.5
36,497 - EX31_RS06360 0.74 -1.7
36,498 + EX31_RS06360 0.74 +0.7
36,498 + EX31_RS06360 0.74 +1.4
36,498 + EX31_RS06360 0.74 -1.7
36,498 + EX31_RS06360 0.74 +0.8
36,499 - EX31_RS06360 0.74 -0.3
36,509 + EX31_RS06360 0.75 -0.4
36,509 + EX31_RS06360 0.75 +0.0
36,587 - EX31_RS06360 0.84 +1.2
36,595 + EX31_RS06360 0.84 -0.5
36,598 + EX31_RS06360 0.85 +0.1
36,646 - EX31_RS06360 0.90 -0.9
36,752 + -0.4
36,775 - -1.8
36,787 - -1.9
36,866 - -1.6
36,933 + EX31_RS06365 0.11 -0.6
36,933 + EX31_RS06365 0.11 -0.0
36,994 - EX31_RS06365 0.18 -1.2
37,056 + EX31_RS06365 0.24 -1.9
37,104 + EX31_RS06365 0.29 -0.2
37,104 + EX31_RS06365 0.29 -0.3
37,417 + EX31_RS06365 0.61 +0.3
37,417 + EX31_RS06365 0.61 -0.5
37,417 + EX31_RS06365 0.61 -0.2
37,418 - EX31_RS06365 0.61 +0.6
37,418 - EX31_RS06365 0.61 -0.0
37,560 + EX31_RS06365 0.75 -1.1
37,621 + EX31_RS06365 0.81 +0.2
37,621 + EX31_RS06365 0.81 -1.2
37,621 + EX31_RS06365 0.81 -2.1
37,710 + -0.0
37,801 + -0.6
37,801 + +2.5
37,810 - -0.1
37,845 + -0.6
37,846 - -0.5
37,866 + -1.8
37,876 + -0.5
37,877 - +0.5
37,883 + -0.6
37,911 + +0.9
37,912 - -1.3
37,957 + +0.7
37,957 + +0.3
37,961 + -1.5
37,961 + +0.8
37,961 + -0.1
37,983 + -3.1
37,984 - +0.6
37,984 - -1.5
38,072 + +0.8
38,357 + EX31_RS06370 0.40 -2.0
38,357 + EX31_RS06370 0.40 -2.6
38,358 - EX31_RS06370 0.40 +0.7
38,358 - EX31_RS06370 0.40 -0.9
38,358 - EX31_RS06370 0.40 -2.5
38,414 + EX31_RS06370 0.48 -2.7
38,415 - EX31_RS06370 0.48 +0.4
38,415 - EX31_RS06370 0.48 +1.2
38,627 + EX31_RS06370 0.80 -1.1
38,628 - EX31_RS06370 0.80 +0.8
38,639 + EX31_RS06370 0.81 +0.9
38,732 + -0.7
38,732 + -1.1
38,793 - +1.5
38,795 - -0.2
38,795 - +0.6

Or see this region's nucleotide sequence