Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01380 and EX31_RS01385 are separated by 20 nucleotides EX31_RS01385 and EX31_RS01390 are separated by 140 nucleotides EX31_RS01390 and EX31_RS01395 are separated by 129 nucleotides
EX31_RS01380: EX31_RS01380 - hypothetical protein, at 307,383 to 308,630
_RS01380
EX31_RS01385: EX31_RS01385 - EamA family transporter, at 308,651 to 309,574
_RS01385
EX31_RS01390: EX31_RS01390 - hypothetical protein, at 309,715 to 310,437
_RS01390
EX31_RS01395: EX31_RS01395 - DHA2 family efflux MFS transporter permease subunit, at 310,567 to 312,012
_RS01395
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1 at 307.692 kb on + strand, within EX31_RS01380 at 307.692 kb on + strand, within EX31_RS01380 at 307.695 kb on + strand, within EX31_RS01380 at 307.696 kb on - strand, within EX31_RS01380 at 307.761 kb on - strand, within EX31_RS01380 at 307.820 kb on + strand, within EX31_RS01380 at 307.828 kb on + strand, within EX31_RS01380 at 307.828 kb on + strand, within EX31_RS01380 at 307.842 kb on + strand, within EX31_RS01380 at 307.843 kb on - strand, within EX31_RS01380 at 307.843 kb on - strand, within EX31_RS01380 at 307.864 kb on - strand, within EX31_RS01380 at 307.864 kb on - strand, within EX31_RS01380 at 307.896 kb on + strand, within EX31_RS01380 at 307.898 kb on + strand, within EX31_RS01380 at 307.898 kb on + strand, within EX31_RS01380 at 307.898 kb on + strand, within EX31_RS01380 at 307.899 kb on - strand, within EX31_RS01380 at 308.009 kb on + strand, within EX31_RS01380 at 308.010 kb on - strand, within EX31_RS01380 at 308.037 kb on - strand, within EX31_RS01380 at 308.037 kb on - strand, within EX31_RS01380 at 308.055 kb on + strand, within EX31_RS01380 at 308.055 kb on + strand, within EX31_RS01380 at 308.055 kb on + strand, within EX31_RS01380 at 308.056 kb on - strand, within EX31_RS01380 at 308.165 kb on + strand, within EX31_RS01380 at 308.292 kb on - strand, within EX31_RS01380 at 308.325 kb on + strand, within EX31_RS01380 at 308.388 kb on - strand, within EX31_RS01380 at 308.415 kb on + strand, within EX31_RS01380 at 308.416 kb on - strand, within EX31_RS01380 at 308.458 kb on - strand, within EX31_RS01380 at 308.580 kb on + strand at 308.592 kb on + strand at 308.593 kb on - strand at 308.595 kb on - strand at 308.605 kb on + strand at 308.619 kb on + strand at 308.620 kb on - strand at 308.620 kb on - strand at 308.652 kb on + strand at 308.872 kb on - strand, within EX31_RS01385 at 308.881 kb on - strand, within EX31_RS01385 at 308.899 kb on + strand, within EX31_RS01385 at 308.971 kb on + strand, within EX31_RS01385 at 308.971 kb on + strand, within EX31_RS01385 at 308.972 kb on - strand, within EX31_RS01385 at 308.972 kb on - strand, within EX31_RS01385 at 308.974 kb on - strand, within EX31_RS01385 at 308.974 kb on - strand, within EX31_RS01385 at 308.974 kb on - strand, within EX31_RS01385 at 309.094 kb on - strand, within EX31_RS01385 at 309.330 kb on + strand, within EX31_RS01385 at 309.330 kb on + strand, within EX31_RS01385 at 309.330 kb on + strand, within EX31_RS01385 at 309.330 kb on + strand, within EX31_RS01385 at 309.330 kb on + strand, within EX31_RS01385 at 309.330 kb on + strand, within EX31_RS01385 at 309.331 kb on - strand, within EX31_RS01385 at 309.331 kb on - strand, within EX31_RS01385 at 309.331 kb on - strand, within EX31_RS01385 at 309.546 kb on - strand at 309.632 kb on + strand at 309.632 kb on + strand at 309.633 kb on - strand at 309.643 kb on - strand at 309.651 kb on + strand at 309.693 kb on + strand at 309.714 kb on - strand at 309.908 kb on - strand, within EX31_RS01390 at 310.179 kb on + strand, within EX31_RS01390 at 310.179 kb on + strand, within EX31_RS01390 at 310.180 kb on - strand, within EX31_RS01390 at 310.435 kb on + strand at 310.473 kb on + strand at 310.473 kb on + strand at 310.473 kb on + strand at 310.474 kb on - strand at 310.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 307,692 + EX31_RS01380 0.25 -0.6 307,692 + EX31_RS01380 0.25 +1.2 307,695 + EX31_RS01380 0.25 -0.8 307,696 - EX31_RS01380 0.25 +0.1 307,761 - EX31_RS01380 0.30 -0.6 307,820 + EX31_RS01380 0.35 -0.7 307,828 + EX31_RS01380 0.36 -0.9 307,828 + EX31_RS01380 0.36 +1.3 307,842 + EX31_RS01380 0.37 +0.2 307,843 - EX31_RS01380 0.37 +1.3 307,843 - EX31_RS01380 0.37 +0.0 307,864 - EX31_RS01380 0.39 +0.2 307,864 - EX31_RS01380 0.39 +1.0 307,896 + EX31_RS01380 0.41 -0.8 307,898 + EX31_RS01380 0.41 -0.5 307,898 + EX31_RS01380 0.41 +0.2 307,898 + EX31_RS01380 0.41 +0.2 307,899 - EX31_RS01380 0.41 +0.2 308,009 + EX31_RS01380 0.50 -1.8 308,010 - EX31_RS01380 0.50 +0.6 308,037 - EX31_RS01380 0.52 +1.1 308,037 - EX31_RS01380 0.52 +0.3 308,055 + EX31_RS01380 0.54 +0.7 308,055 + EX31_RS01380 0.54 +0.7 308,055 + EX31_RS01380 0.54 +0.6 308,056 - EX31_RS01380 0.54 +1.0 308,165 + EX31_RS01380 0.63 -0.9 308,292 - EX31_RS01380 0.73 +1.3 308,325 + EX31_RS01380 0.75 -0.1 308,388 - EX31_RS01380 0.81 -0.5 308,415 + EX31_RS01380 0.83 -1.1 308,416 - EX31_RS01380 0.83 -0.5 308,458 - EX31_RS01380 0.86 +1.0 308,580 + -0.8 308,592 + +0.6 308,593 - +0.6 308,595 - -0.6 308,605 + +0.4 308,619 + +0.2 308,620 - +0.1 308,620 - -2.3 308,652 + -0.8 308,872 - EX31_RS01385 0.24 -0.8 308,881 - EX31_RS01385 0.25 -0.6 308,899 + EX31_RS01385 0.27 +0.3 308,971 + EX31_RS01385 0.35 -0.7 308,971 + EX31_RS01385 0.35 +0.7 308,972 - EX31_RS01385 0.35 -2.1 308,972 - EX31_RS01385 0.35 -0.4 308,974 - EX31_RS01385 0.35 -0.2 308,974 - EX31_RS01385 0.35 -0.6 308,974 - EX31_RS01385 0.35 -1.2 309,094 - EX31_RS01385 0.48 -0.8 309,330 + EX31_RS01385 0.73 -0.1 309,330 + EX31_RS01385 0.73 -0.9 309,330 + EX31_RS01385 0.73 -0.4 309,330 + EX31_RS01385 0.73 -0.8 309,330 + EX31_RS01385 0.73 -0.1 309,330 + EX31_RS01385 0.73 -0.3 309,331 - EX31_RS01385 0.74 +0.3 309,331 - EX31_RS01385 0.74 -1.2 309,331 - EX31_RS01385 0.74 +0.3 309,546 - -1.2 309,632 + -0.4 309,632 + -1.7 309,633 - +1.2 309,643 - +0.1 309,651 + +0.2 309,693 + +0.0 309,714 - -0.6 309,908 - EX31_RS01390 0.27 -1.2 310,179 + EX31_RS01390 0.64 -0.8 310,179 + EX31_RS01390 0.64 +0.5 310,180 - EX31_RS01390 0.64 -0.4 310,435 + -1.1 310,473 + +0.2 310,473 + -1.9 310,473 + +0.2 310,474 - +0.0 310,511 - +0.2
Or see this region's nucleotide sequence