Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24315 and EX31_RS24320 are separated by 265 nucleotides EX31_RS24320 and EX31_RS24325 are separated by 211 nucleotides
EX31_RS24315: EX31_RS24315 - multidrug efflux MFS transporter MdtG, at 627,947 to 629,185
_RS24315
EX31_RS24320: EX31_RS24320 - DoxX family protein, at 629,451 to 629,885
_RS24320
EX31_RS24325: EX31_RS24325 - LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee, at 630,097 to 631,032
_RS24325
Position (kb) 629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 628.484 kb on - strand, within EX31_RS24315 at 628.603 kb on - strand, within EX31_RS24315 at 628.603 kb on - strand, within EX31_RS24315 at 628.645 kb on + strand, within EX31_RS24315 at 628.668 kb on + strand, within EX31_RS24315 at 628.668 kb on + strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.760 kb on - strand, within EX31_RS24315 at 628.827 kb on - strand, within EX31_RS24315 at 628.875 kb on - strand, within EX31_RS24315 at 628.877 kb on + strand, within EX31_RS24315 at 628.877 kb on + strand, within EX31_RS24315 at 628.877 kb on + strand, within EX31_RS24315 at 628.878 kb on - strand, within EX31_RS24315 at 628.878 kb on - strand, within EX31_RS24315 at 629.015 kb on - strand, within EX31_RS24315 at 629.015 kb on - strand, within EX31_RS24315 at 629.055 kb on + strand, within EX31_RS24315 at 629.131 kb on + strand at 629.131 kb on + strand at 629.131 kb on + strand at 629.247 kb on + strand at 629.247 kb on + strand at 629.247 kb on + strand at 629.248 kb on - strand at 629.251 kb on + strand at 629.251 kb on + strand at 629.252 kb on - strand at 629.252 kb on - strand at 629.282 kb on + strand at 629.286 kb on + strand at 629.287 kb on - strand at 629.317 kb on + strand at 629.433 kb on + strand at 629.437 kb on - strand at 629.437 kb on - strand at 629.440 kb on - strand at 629.440 kb on - strand at 629.452 kb on + strand at 629.453 kb on - strand at 629.483 kb on - strand at 629.483 kb on - strand at 629.528 kb on - strand, within EX31_RS24320 at 629.568 kb on - strand, within EX31_RS24320 at 629.695 kb on + strand, within EX31_RS24320 at 629.696 kb on - strand, within EX31_RS24320 at 629.705 kb on - strand, within EX31_RS24320 at 629.796 kb on + strand, within EX31_RS24320 at 629.829 kb on - strand, within EX31_RS24320 at 629.885 kb on + strand at 629.885 kb on + strand at 629.886 kb on - strand at 629.886 kb on - strand at 629.886 kb on - strand at 629.954 kb on + strand at 629.982 kb on + strand at 629.982 kb on + strand at 629.983 kb on - strand at 630.014 kb on + strand at 630.015 kb on - strand at 630.015 kb on - strand at 630.015 kb on - strand at 630.115 kb on - strand at 630.169 kb on - strand at 630.169 kb on - strand at 630.169 kb on - strand at 630.169 kb on - strand at 630.169 kb on - strand at 630.170 kb on + strand at 630.170 kb on + strand at 630.171 kb on - strand at 630.171 kb on - strand at 630.219 kb on - strand, within EX31_RS24325 at 630.219 kb on - strand, within EX31_RS24325 at 630.273 kb on + strand, within EX31_RS24325 at 630.274 kb on - strand, within EX31_RS24325 at 630.274 kb on - strand, within EX31_RS24325 at 630.357 kb on - strand, within EX31_RS24325 at 630.357 kb on - strand, within EX31_RS24325 at 630.357 kb on - strand, within EX31_RS24325 at 630.400 kb on + strand, within EX31_RS24325 at 630.426 kb on - strand, within EX31_RS24325 at 630.601 kb on - strand, within EX31_RS24325 at 630.641 kb on - strand, within EX31_RS24325 at 630.801 kb on + strand, within EX31_RS24325 at 630.802 kb on - strand, within EX31_RS24325 at 630.802 kb on - strand, within EX31_RS24325
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 628,484 - EX31_RS24315 0.43 +0.2 628,603 - EX31_RS24315 0.53 -0.3 628,603 - EX31_RS24315 0.53 +0.8 628,645 + EX31_RS24315 0.56 -0.3 628,668 + EX31_RS24315 0.58 -1.6 628,668 + EX31_RS24315 0.58 +0.4 628,669 - EX31_RS24315 0.58 +0.6 628,669 - EX31_RS24315 0.58 -1.4 628,669 - EX31_RS24315 0.58 +1.4 628,669 - EX31_RS24315 0.58 +1.3 628,669 - EX31_RS24315 0.58 -0.3 628,669 - EX31_RS24315 0.58 +0.2 628,669 - EX31_RS24315 0.58 +1.1 628,760 - EX31_RS24315 0.66 -1.4 628,827 - EX31_RS24315 0.71 +0.3 628,875 - EX31_RS24315 0.75 -0.2 628,877 + EX31_RS24315 0.75 +0.8 628,877 + EX31_RS24315 0.75 -1.0 628,877 + EX31_RS24315 0.75 -0.2 628,878 - EX31_RS24315 0.75 +0.1 628,878 - EX31_RS24315 0.75 +0.4 629,015 - EX31_RS24315 0.86 -1.7 629,015 - EX31_RS24315 0.86 +1.1 629,055 + EX31_RS24315 0.89 +0.5 629,131 + +0.4 629,131 + +0.2 629,131 + +0.4 629,247 + +0.5 629,247 + +0.2 629,247 + -0.6 629,248 - -1.0 629,251 + +0.5 629,251 + -0.8 629,252 - +0.0 629,252 - -0.3 629,282 + -0.8 629,286 + -0.9 629,287 - +0.8 629,317 + +0.7 629,433 + -0.6 629,437 - +0.7 629,437 - -0.7 629,440 - -0.7 629,440 - +0.9 629,452 + +0.7 629,453 - +0.2 629,483 - -0.2 629,483 - -1.1 629,528 - EX31_RS24320 0.18 -0.3 629,568 - EX31_RS24320 0.27 -0.9 629,695 + EX31_RS24320 0.56 -2.0 629,696 - EX31_RS24320 0.56 +0.2 629,705 - EX31_RS24320 0.58 -0.5 629,796 + EX31_RS24320 0.79 -0.2 629,829 - EX31_RS24320 0.87 +0.3 629,885 + -0.3 629,885 + -3.3 629,886 - -2.0 629,886 - -0.1 629,886 - -0.2 629,954 + -0.4 629,982 + +0.4 629,982 + +0.6 629,983 - -1.3 630,014 + +0.3 630,015 - +0.6 630,015 - -0.1 630,015 - +1.8 630,115 - -0.4 630,169 - -1.6 630,169 - +2.4 630,169 - +0.8 630,169 - -0.6 630,169 - +0.9 630,170 + +1.2 630,170 + +0.4 630,171 - +1.1 630,171 - +0.5 630,219 - EX31_RS24325 0.13 +0.5 630,219 - EX31_RS24325 0.13 +0.6 630,273 + EX31_RS24325 0.19 +0.8 630,274 - EX31_RS24325 0.19 -0.7 630,274 - EX31_RS24325 0.19 -1.9 630,357 - EX31_RS24325 0.28 -1.6 630,357 - EX31_RS24325 0.28 +2.2 630,357 - EX31_RS24325 0.28 -0.3 630,400 + EX31_RS24325 0.32 +1.1 630,426 - EX31_RS24325 0.35 +1.1 630,601 - EX31_RS24325 0.54 +2.5 630,641 - EX31_RS24325 0.58 -0.6 630,801 + EX31_RS24325 0.75 +0.0 630,802 - EX31_RS24325 0.75 -2.4 630,802 - EX31_RS24325 0.75 -1.1
Or see this region's nucleotide sequence