Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23985 and EX31_RS23990 are separated by 1 nucleotides EX31_RS23990 and EX31_RS23995 overlap by 1 nucleotides EX31_RS23995 and EX31_RS24000 overlap by 8 nucleotides
EX31_RS23985: EX31_RS23985 - FAD-dependent oxidoreductase, at 564,993 to 566,351
_RS23985
EX31_RS23990: EX31_RS23990 - SDR family NAD(P)-dependent oxidoreductase, at 566,353 to 567,069
_RS23990
EX31_RS23995: EX31_RS23995 - nuclear transport factor 2 family protein, at 567,069 to 567,521
_RS23995
EX31_RS24000: EX31_RS24000 - MerR family transcriptional regulator, at 567,514 to 568,374
_RS24000
Position (kb) 566
567
568 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 565.356 kb on + strand, within EX31_RS23985 at 565.356 kb on + strand, within EX31_RS23985 at 565.356 kb on + strand, within EX31_RS23985 at 565.356 kb on + strand, within EX31_RS23985 at 565.356 kb on + strand, within EX31_RS23985 at 565.357 kb on - strand, within EX31_RS23985 at 565.357 kb on - strand, within EX31_RS23985 at 565.357 kb on - strand, within EX31_RS23985 at 565.399 kb on + strand, within EX31_RS23985 at 565.400 kb on - strand, within EX31_RS23985 at 565.565 kb on + strand, within EX31_RS23985 at 565.608 kb on + strand, within EX31_RS23985 at 565.698 kb on - strand, within EX31_RS23985 at 565.699 kb on + strand, within EX31_RS23985 at 565.699 kb on + strand, within EX31_RS23985 at 565.699 kb on + strand, within EX31_RS23985 at 565.699 kb on + strand, within EX31_RS23985 at 565.700 kb on - strand, within EX31_RS23985 at 565.700 kb on - strand, within EX31_RS23985 at 565.700 kb on - strand, within EX31_RS23985 at 565.855 kb on + strand, within EX31_RS23985 at 565.855 kb on + strand, within EX31_RS23985 at 565.855 kb on + strand, within EX31_RS23985 at 565.855 kb on + strand, within EX31_RS23985 at 565.855 kb on + strand, within EX31_RS23985 at 565.855 kb on + strand, within EX31_RS23985 at 565.855 kb on + strand, within EX31_RS23985 at 565.856 kb on - strand, within EX31_RS23985 at 565.856 kb on - strand, within EX31_RS23985 at 565.856 kb on - strand, within EX31_RS23985 at 565.856 kb on - strand, within EX31_RS23985 at 565.856 kb on - strand, within EX31_RS23985 at 565.856 kb on - strand, within EX31_RS23985 at 565.910 kb on + strand, within EX31_RS23985 at 565.911 kb on - strand, within EX31_RS23985 at 566.051 kb on - strand, within EX31_RS23985 at 566.051 kb on - strand, within EX31_RS23985 at 566.060 kb on + strand, within EX31_RS23985 at 566.060 kb on + strand, within EX31_RS23985 at 566.060 kb on + strand, within EX31_RS23985 at 566.061 kb on - strand, within EX31_RS23985 at 566.061 kb on - strand, within EX31_RS23985 at 566.147 kb on - strand, within EX31_RS23985 at 566.159 kb on + strand, within EX31_RS23985 at 566.159 kb on + strand, within EX31_RS23985 at 566.159 kb on + strand, within EX31_RS23985 at 566.161 kb on + strand, within EX31_RS23985 at 566.161 kb on + strand, within EX31_RS23985 at 566.161 kb on + strand, within EX31_RS23985 at 566.162 kb on - strand, within EX31_RS23985 at 566.162 kb on - strand, within EX31_RS23985 at 566.225 kb on + strand at 566.225 kb on + strand at 566.225 kb on + strand at 566.225 kb on + strand at 566.225 kb on + strand at 566.328 kb on + strand at 566.375 kb on - strand at 566.725 kb on + strand, within EX31_RS23990 at 566.896 kb on + strand, within EX31_RS23990 at 567.128 kb on - strand, within EX31_RS23995 at 567.128 kb on - strand, within EX31_RS23995 at 567.128 kb on - strand, within EX31_RS23995 at 567.149 kb on - strand, within EX31_RS23995 at 567.163 kb on + strand, within EX31_RS23995 at 567.163 kb on + strand, within EX31_RS23995 at 567.163 kb on + strand, within EX31_RS23995 at 567.164 kb on - strand, within EX31_RS23995 at 567.164 kb on - strand, within EX31_RS23995 at 567.164 kb on - strand, within EX31_RS23995 at 567.167 kb on + strand, within EX31_RS23995 at 567.167 kb on + strand, within EX31_RS23995 at 567.168 kb on - strand, within EX31_RS23995 at 567.168 kb on - strand, within EX31_RS23995 at 567.168 kb on - strand, within EX31_RS23995 at 567.168 kb on - strand, within EX31_RS23995 at 567.168 kb on - strand, within EX31_RS23995 at 567.168 kb on - strand, within EX31_RS23995 at 567.170 kb on + strand, within EX31_RS23995 at 567.170 kb on + strand, within EX31_RS23995 at 567.288 kb on - strand, within EX31_RS23995 at 567.288 kb on - strand, within EX31_RS23995 at 567.317 kb on - strand, within EX31_RS23995 at 567.347 kb on - strand, within EX31_RS23995 at 567.374 kb on - strand, within EX31_RS23995 at 567.374 kb on - strand, within EX31_RS23995 at 567.412 kb on + strand, within EX31_RS23995 at 567.417 kb on - strand, within EX31_RS23995 at 567.516 kb on - strand at 567.639 kb on + strand, within EX31_RS24000 at 567.640 kb on - strand, within EX31_RS24000 at 567.640 kb on - strand, within EX31_RS24000 at 567.767 kb on + strand, within EX31_RS24000 at 567.793 kb on + strand, within EX31_RS24000 at 567.794 kb on - strand, within EX31_RS24000 at 567.858 kb on + strand, within EX31_RS24000 at 567.859 kb on - strand, within EX31_RS24000 at 567.859 kb on - strand, within EX31_RS24000 at 568.020 kb on + strand, within EX31_RS24000
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 565,356 + EX31_RS23985 0.27 +0.7 565,356 + EX31_RS23985 0.27 +0.2 565,356 + EX31_RS23985 0.27 +1.1 565,356 + EX31_RS23985 0.27 +0.9 565,356 + EX31_RS23985 0.27 +0.6 565,357 - EX31_RS23985 0.27 +0.5 565,357 - EX31_RS23985 0.27 +0.5 565,357 - EX31_RS23985 0.27 -2.5 565,399 + EX31_RS23985 0.30 -0.3 565,400 - EX31_RS23985 0.30 -0.2 565,565 + EX31_RS23985 0.42 -0.7 565,608 + EX31_RS23985 0.45 -0.5 565,698 - EX31_RS23985 0.52 -0.6 565,699 + EX31_RS23985 0.52 +1.1 565,699 + EX31_RS23985 0.52 -0.1 565,699 + EX31_RS23985 0.52 -0.4 565,699 + EX31_RS23985 0.52 -0.4 565,700 - EX31_RS23985 0.52 -0.3 565,700 - EX31_RS23985 0.52 -0.3 565,700 - EX31_RS23985 0.52 -0.5 565,855 + EX31_RS23985 0.63 +0.7 565,855 + EX31_RS23985 0.63 -0.8 565,855 + EX31_RS23985 0.63 -0.3 565,855 + EX31_RS23985 0.63 +0.7 565,855 + EX31_RS23985 0.63 -0.2 565,855 + EX31_RS23985 0.63 +0.6 565,855 + EX31_RS23985 0.63 +0.5 565,856 - EX31_RS23985 0.64 -0.5 565,856 - EX31_RS23985 0.64 +0.2 565,856 - EX31_RS23985 0.64 -1.9 565,856 - EX31_RS23985 0.64 +0.9 565,856 - EX31_RS23985 0.64 -1.0 565,856 - EX31_RS23985 0.64 -0.6 565,910 + EX31_RS23985 0.67 -3.1 565,911 - EX31_RS23985 0.68 +0.4 566,051 - EX31_RS23985 0.78 +0.2 566,051 - EX31_RS23985 0.78 -0.2 566,060 + EX31_RS23985 0.79 -0.9 566,060 + EX31_RS23985 0.79 -2.6 566,060 + EX31_RS23985 0.79 -1.0 566,061 - EX31_RS23985 0.79 +1.4 566,061 - EX31_RS23985 0.79 +1.1 566,147 - EX31_RS23985 0.85 +0.1 566,159 + EX31_RS23985 0.86 -0.5 566,159 + EX31_RS23985 0.86 +0.1 566,159 + EX31_RS23985 0.86 -0.3 566,161 + EX31_RS23985 0.86 -0.5 566,161 + EX31_RS23985 0.86 -0.1 566,161 + EX31_RS23985 0.86 -0.9 566,162 - EX31_RS23985 0.86 -1.4 566,162 - EX31_RS23985 0.86 +0.1 566,225 + -0.0 566,225 + -1.3 566,225 + -0.7 566,225 + -0.2 566,225 + -3.3 566,328 + -0.4 566,375 - +0.4 566,725 + EX31_RS23990 0.52 +0.1 566,896 + EX31_RS23990 0.76 -0.6 567,128 - EX31_RS23995 0.13 -0.3 567,128 - EX31_RS23995 0.13 -0.2 567,128 - EX31_RS23995 0.13 -0.1 567,149 - EX31_RS23995 0.18 -0.2 567,163 + EX31_RS23995 0.21 +0.5 567,163 + EX31_RS23995 0.21 -0.4 567,163 + EX31_RS23995 0.21 +0.3 567,164 - EX31_RS23995 0.21 -0.2 567,164 - EX31_RS23995 0.21 -1.0 567,164 - EX31_RS23995 0.21 -0.7 567,167 + EX31_RS23995 0.22 +0.4 567,167 + EX31_RS23995 0.22 +0.6 567,168 - EX31_RS23995 0.22 -0.5 567,168 - EX31_RS23995 0.22 -2.3 567,168 - EX31_RS23995 0.22 +0.6 567,168 - EX31_RS23995 0.22 -1.7 567,168 - EX31_RS23995 0.22 +0.2 567,168 - EX31_RS23995 0.22 -2.5 567,170 + EX31_RS23995 0.22 -2.0 567,170 + EX31_RS23995 0.22 +0.4 567,288 - EX31_RS23995 0.48 -0.4 567,288 - EX31_RS23995 0.48 +0.4 567,317 - EX31_RS23995 0.55 +0.5 567,347 - EX31_RS23995 0.61 +0.1 567,374 - EX31_RS23995 0.67 +0.7 567,374 - EX31_RS23995 0.67 +0.1 567,412 + EX31_RS23995 0.76 -2.8 567,417 - EX31_RS23995 0.77 +0.1 567,516 - +0.8 567,639 + EX31_RS24000 0.15 +0.3 567,640 - EX31_RS24000 0.15 -0.3 567,640 - EX31_RS24000 0.15 -1.3 567,767 + EX31_RS24000 0.29 -0.9 567,793 + EX31_RS24000 0.32 +0.1 567,794 - EX31_RS24000 0.33 -0.6 567,858 + EX31_RS24000 0.40 +0.2 567,859 - EX31_RS24000 0.40 -0.2 567,859 - EX31_RS24000 0.40 -0.6 568,020 + EX31_RS24000 0.59 +0.2
Or see this region's nucleotide sequence