Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23810 and EX31_RS23815 are separated by 369 nucleotides EX31_RS23815 and EX31_RS23820 are separated by 177 nucleotides EX31_RS23820 and EX31_RS23825 are separated by 139 nucleotides
EX31_RS23810: EX31_RS23810 - hypothetical protein, at 529,615 to 530,244
_RS23810
EX31_RS23815: EX31_RS23815 - hypothetical protein, at 530,614 to 531,252
_RS23815
EX31_RS23820: EX31_RS23820 - YIP1 family protein, at 531,430 to 532,020
_RS23820
EX31_RS23825: EX31_RS23825 - D-lactate dehydrogenase, at 532,160 to 533,851
_RS23825
Position (kb) 530
531
532 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 529.736 kb on + strand, within EX31_RS23810 at 529.737 kb on - strand, within EX31_RS23810 at 529.769 kb on - strand, within EX31_RS23810 at 529.769 kb on - strand, within EX31_RS23810 at 529.769 kb on - strand, within EX31_RS23810 at 529.769 kb on - strand, within EX31_RS23810 at 529.769 kb on - strand, within EX31_RS23810 at 529.773 kb on - strand, within EX31_RS23810 at 529.794 kb on + strand, within EX31_RS23810 at 530.160 kb on + strand, within EX31_RS23810 at 530.160 kb on + strand, within EX31_RS23810 at 530.161 kb on - strand, within EX31_RS23810 at 530.161 kb on - strand, within EX31_RS23810 at 530.161 kb on - strand, within EX31_RS23810 at 530.190 kb on + strand at 530.208 kb on + strand at 530.209 kb on - strand at 530.223 kb on + strand at 530.224 kb on - strand at 530.224 kb on - strand at 530.227 kb on + strand at 530.227 kb on + strand at 530.227 kb on + strand at 530.227 kb on + strand at 530.227 kb on + strand at 530.227 kb on + strand at 530.227 kb on + strand at 530.227 kb on + strand at 530.227 kb on + strand at 530.227 kb on + strand at 530.227 kb on + strand at 530.228 kb on - strand at 530.228 kb on - strand at 530.228 kb on - strand at 530.228 kb on - strand at 530.228 kb on - strand at 530.228 kb on - strand at 530.228 kb on - strand at 530.228 kb on - strand at 530.228 kb on - strand at 530.228 kb on - strand at 530.228 kb on - strand at 530.228 kb on - strand at 530.235 kb on + strand at 530.235 kb on + strand at 530.236 kb on - strand at 530.236 kb on - strand at 530.236 kb on - strand at 530.236 kb on - strand at 530.246 kb on + strand at 530.247 kb on - strand at 530.247 kb on - strand at 530.247 kb on - strand at 530.247 kb on - strand at 530.258 kb on + strand at 530.272 kb on + strand at 530.273 kb on - strand at 530.295 kb on - strand at 530.309 kb on + strand at 530.316 kb on - strand at 530.452 kb on + strand at 530.485 kb on - strand at 530.485 kb on - strand at 530.485 kb on - strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.488 kb on + strand at 530.488 kb on + strand at 530.488 kb on + strand at 530.488 kb on + strand at 530.488 kb on + strand at 530.488 kb on + strand at 530.488 kb on + strand at 530.488 kb on + strand at 530.488 kb on + strand at 530.488 kb on + strand at 530.488 kb on + strand at 530.488 kb on + strand at 530.488 kb on + strand at 530.489 kb on - strand at 530.489 kb on - strand at 530.489 kb on - strand at 530.489 kb on - strand at 530.489 kb on - strand at 530.489 kb on - strand at 530.489 kb on - strand at 530.489 kb on - strand at 530.489 kb on - strand at 530.489 kb on - strand at 530.489 kb on - strand at 530.492 kb on + strand at 530.492 kb on + strand at 530.492 kb on + strand at 530.492 kb on + strand at 530.492 kb on + strand at 530.493 kb on - strand at 530.493 kb on - strand at 530.493 kb on - strand at 530.493 kb on - strand at 530.493 kb on - strand at 530.493 kb on - strand at 530.493 kb on - strand at 530.496 kb on + strand at 530.496 kb on + strand at 530.496 kb on + strand at 530.497 kb on - strand at 530.508 kb on + strand at 530.541 kb on + strand at 530.580 kb on + strand at 530.613 kb on + strand at 530.613 kb on + strand at 530.613 kb on + strand at 530.613 kb on + strand at 530.613 kb on + strand at 530.613 kb on + strand at 530.613 kb on + strand at 530.613 kb on + strand at 530.613 kb on + strand at 530.613 kb on + strand at 530.613 kb on + strand at 530.613 kb on + strand at 530.613 kb on + strand at 530.614 kb on - strand at 530.614 kb on - strand at 530.614 kb on - strand at 530.614 kb on - strand at 530.614 kb on - strand at 530.640 kb on - strand at 530.662 kb on + strand at 530.662 kb on + strand at 530.695 kb on + strand, within EX31_RS23815 at 530.696 kb on - strand, within EX31_RS23815 at 530.932 kb on - strand, within EX31_RS23815 at 530.999 kb on + strand, within EX31_RS23815 at 531.003 kb on + strand, within EX31_RS23815 at 531.004 kb on - strand, within EX31_RS23815 at 531.021 kb on - strand, within EX31_RS23815 at 531.021 kb on - strand, within EX31_RS23815 at 531.021 kb on - strand, within EX31_RS23815 at 531.024 kb on + strand, within EX31_RS23815 at 531.024 kb on + strand, within EX31_RS23815 at 531.174 kb on + strand, within EX31_RS23815 at 531.241 kb on + strand at 531.241 kb on + strand at 531.241 kb on + strand at 531.242 kb on - strand at 531.282 kb on - strand at 531.325 kb on - strand at 531.325 kb on - strand at 531.327 kb on + strand at 531.327 kb on + strand at 531.328 kb on - strand at 531.329 kb on + strand at 531.329 kb on + strand at 531.330 kb on - strand at 531.330 kb on - strand at 531.330 kb on - strand at 531.330 kb on - strand at 531.350 kb on + strand at 531.351 kb on - strand at 531.414 kb on + strand at 531.414 kb on + strand at 531.415 kb on - strand at 531.415 kb on - strand at 531.415 kb on - strand at 531.517 kb on + strand, within EX31_RS23820 at 531.518 kb on - strand, within EX31_RS23820 at 531.518 kb on - strand, within EX31_RS23820 at 531.640 kb on + strand, within EX31_RS23820 at 531.640 kb on + strand, within EX31_RS23820 at 531.641 kb on - strand, within EX31_RS23820 at 531.641 kb on - strand, within EX31_RS23820 at 531.641 kb on - strand, within EX31_RS23820 at 531.641 kb on - strand, within EX31_RS23820 at 531.642 kb on + strand, within EX31_RS23820 at 531.658 kb on + strand, within EX31_RS23820 at 531.659 kb on - strand, within EX31_RS23820 at 531.700 kb on - strand, within EX31_RS23820 at 531.700 kb on - strand, within EX31_RS23820 at 531.703 kb on + strand, within EX31_RS23820 at 531.722 kb on - strand, within EX31_RS23820 at 531.766 kb on + strand, within EX31_RS23820 at 531.874 kb on + strand, within EX31_RS23820 at 531.875 kb on - strand, within EX31_RS23820 at 531.875 kb on - strand, within EX31_RS23820 at 531.875 kb on - strand, within EX31_RS23820 at 531.888 kb on + strand, within EX31_RS23820 at 531.889 kb on - strand, within EX31_RS23820 at 531.889 kb on - strand, within EX31_RS23820 at 531.960 kb on - strand, within EX31_RS23820 at 531.963 kb on - strand at 531.990 kb on + strand at 531.990 kb on + strand at 531.990 kb on + strand at 531.991 kb on - strand at 531.991 kb on - strand at 532.013 kb on + strand at 532.013 kb on + strand at 532.013 kb on + strand at 532.014 kb on - strand at 532.024 kb on - strand at 532.024 kb on - strand at 532.035 kb on + strand at 532.035 kb on + strand at 532.035 kb on + strand at 532.035 kb on + strand at 532.035 kb on + strand at 532.036 kb on - strand at 532.036 kb on - strand at 532.036 kb on - strand at 532.077 kb on + strand at 532.077 kb on + strand at 532.077 kb on + strand at 532.077 kb on + strand at 532.078 kb on - strand at 532.078 kb on - strand at 532.078 kb on - strand at 532.078 kb on - strand at 532.082 kb on + strand at 532.082 kb on + strand at 532.082 kb on + strand at 532.082 kb on + strand at 532.086 kb on + strand at 532.086 kb on + strand at 532.087 kb on - strand at 532.087 kb on - strand at 532.162 kb on - strand at 532.162 kb on - strand at 532.162 kb on - strand at 532.162 kb on - strand at 532.237 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 529,736 + EX31_RS23810 0.19 +0.6 529,737 - EX31_RS23810 0.19 -0.5 529,769 - EX31_RS23810 0.24 +1.1 529,769 - EX31_RS23810 0.24 +0.9 529,769 - EX31_RS23810 0.24 +0.7 529,769 - EX31_RS23810 0.24 -0.1 529,769 - EX31_RS23810 0.24 -1.6 529,773 - EX31_RS23810 0.25 -0.4 529,794 + EX31_RS23810 0.28 -0.7 530,160 + EX31_RS23810 0.87 +0.6 530,160 + EX31_RS23810 0.87 -0.2 530,161 - EX31_RS23810 0.87 +0.4 530,161 - EX31_RS23810 0.87 +0.7 530,161 - EX31_RS23810 0.87 +0.1 530,190 + +1.5 530,208 + -3.1 530,209 - +0.8 530,223 + -0.3 530,224 - -0.4 530,224 - -0.6 530,227 + +0.6 530,227 + +0.2 530,227 + -2.9 530,227 + +0.0 530,227 + +1.0 530,227 + +0.9 530,227 + -0.9 530,227 + +0.6 530,227 + +0.5 530,227 + +1.8 530,227 + -0.1 530,228 - -0.6 530,228 - +0.4 530,228 - +0.3 530,228 - -0.7 530,228 - -0.1 530,228 - -1.2 530,228 - +0.8 530,228 - +1.2 530,228 - -0.9 530,228 - -0.8 530,228 - -0.1 530,228 - +0.4 530,235 + +0.7 530,235 + -0.6 530,236 - +0.5 530,236 - +2.7 530,236 - +0.4 530,236 - -0.8 530,246 + +0.2 530,247 - -0.7 530,247 - +0.8 530,247 - -0.3 530,247 - -0.2 530,258 + +0.4 530,272 + -0.1 530,273 - -0.8 530,295 - +0.3 530,309 + -1.0 530,316 - +0.7 530,452 + +1.0 530,485 - -0.0 530,485 - -0.0 530,485 - -2.0 530,486 + -0.6 530,486 + -0.2 530,486 + -0.3 530,486 + -0.7 530,486 + -0.5 530,486 + +0.6 530,486 + -0.2 530,486 + -0.1 530,486 + +1.4 530,486 + -0.3 530,486 + -0.0 530,486 + +0.0 530,486 + -0.5 530,486 + +0.8 530,486 + -0.0 530,486 + +0.2 530,486 + +0.2 530,486 + +1.2 530,486 + +0.0 530,486 + +0.5 530,486 + +0.2 530,486 + +0.3 530,486 + -0.4 530,486 + +0.5 530,486 + +0.7 530,486 + -0.1 530,487 - +0.4 530,487 - +0.9 530,487 - +0.2 530,487 - -0.3 530,487 - +0.8 530,487 - -0.6 530,487 - -0.0 530,487 - +0.2 530,487 - +0.3 530,487 - +0.6 530,487 - -1.1 530,487 - -0.3 530,487 - +0.8 530,487 - -1.4 530,487 - -0.3 530,487 - -1.2 530,487 - +0.4 530,487 - -0.2 530,487 - +0.1 530,487 - +0.1 530,487 - -0.9 530,487 - +1.0 530,487 - -0.5 530,488 + -0.1 530,488 + -0.3 530,488 + +1.1 530,488 + +0.6 530,488 + -0.6 530,488 + -0.5 530,488 + -2.1 530,488 + +0.1 530,488 + +0.1 530,488 + +0.5 530,488 + +1.3 530,488 + +0.1 530,488 + +0.2 530,489 - -2.4 530,489 - +0.8 530,489 - +0.8 530,489 - -0.3 530,489 - +1.0 530,489 - +0.8 530,489 - -1.3 530,489 - -0.5 530,489 - -0.6 530,489 - +0.5 530,489 - +0.2 530,492 + -0.3 530,492 + +0.5 530,492 + -2.4 530,492 + +0.6 530,492 + -0.8 530,493 - +0.1 530,493 - +0.7 530,493 - +1.5 530,493 - +0.8 530,493 - +0.2 530,493 - +0.6 530,493 - +1.3 530,496 + -0.7 530,496 + +0.3 530,496 + +0.5 530,497 - +0.3 530,508 + +0.6 530,541 + +0.7 530,580 + -1.8 530,613 + -2.2 530,613 + -0.1 530,613 + +0.1 530,613 + -2.9 530,613 + -0.0 530,613 + -0.3 530,613 + -0.2 530,613 + +0.2 530,613 + -0.1 530,613 + -0.2 530,613 + +0.1 530,613 + -1.0 530,613 + +1.0 530,614 - +1.1 530,614 - -1.5 530,614 - +0.7 530,614 - -0.0 530,614 - -0.7 530,640 - +1.6 530,662 + -0.6 530,662 + +1.0 530,695 + EX31_RS23815 0.13 +0.4 530,696 - EX31_RS23815 0.13 -0.5 530,932 - EX31_RS23815 0.50 -1.6 530,999 + EX31_RS23815 0.60 -1.5 531,003 + EX31_RS23815 0.61 -0.0 531,004 - EX31_RS23815 0.61 -0.0 531,021 - EX31_RS23815 0.64 -0.2 531,021 - EX31_RS23815 0.64 +0.1 531,021 - EX31_RS23815 0.64 +0.4 531,024 + EX31_RS23815 0.64 -1.7 531,024 + EX31_RS23815 0.64 -0.6 531,174 + EX31_RS23815 0.88 -0.3 531,241 + +0.3 531,241 + +0.8 531,241 + -0.1 531,242 - -0.2 531,282 - +0.0 531,325 - -0.6 531,325 - +0.6 531,327 + +1.2 531,327 + +0.2 531,328 - +1.4 531,329 + -0.1 531,329 + -0.0 531,330 - +0.9 531,330 - -0.5 531,330 - -0.6 531,330 - -1.4 531,350 + -0.1 531,351 - -0.3 531,414 + +0.3 531,414 + -2.9 531,415 - -0.3 531,415 - -0.6 531,415 - -0.3 531,517 + EX31_RS23820 0.15 -1.3 531,518 - EX31_RS23820 0.15 -0.2 531,518 - EX31_RS23820 0.15 -0.2 531,640 + EX31_RS23820 0.36 +1.0 531,640 + EX31_RS23820 0.36 -0.3 531,641 - EX31_RS23820 0.36 +0.7 531,641 - EX31_RS23820 0.36 -0.7 531,641 - EX31_RS23820 0.36 -1.3 531,641 - EX31_RS23820 0.36 +0.3 531,642 + EX31_RS23820 0.36 +0.4 531,658 + EX31_RS23820 0.39 -1.8 531,659 - EX31_RS23820 0.39 -0.5 531,700 - EX31_RS23820 0.46 +0.6 531,700 - EX31_RS23820 0.46 +0.7 531,703 + EX31_RS23820 0.46 +0.3 531,722 - EX31_RS23820 0.49 -0.4 531,766 + EX31_RS23820 0.57 -0.0 531,874 + EX31_RS23820 0.75 -1.0 531,875 - EX31_RS23820 0.75 +1.1 531,875 - EX31_RS23820 0.75 +1.6 531,875 - EX31_RS23820 0.75 +0.4 531,888 + EX31_RS23820 0.77 -0.4 531,889 - EX31_RS23820 0.78 -1.4 531,889 - EX31_RS23820 0.78 +1.0 531,960 - EX31_RS23820 0.90 -0.9 531,963 - -0.1 531,990 + -1.2 531,990 + +0.3 531,990 + -0.2 531,991 - +0.1 531,991 - +0.7 532,013 + -0.7 532,013 + +0.2 532,013 + -0.4 532,014 - +1.1 532,024 - +0.8 532,024 - -1.0 532,035 + -0.1 532,035 + -1.2 532,035 + +0.4 532,035 + +1.9 532,035 + +0.4 532,036 - +0.3 532,036 - +1.0 532,036 - +0.3 532,077 + +0.5 532,077 + +0.8 532,077 + -0.3 532,077 + +0.1 532,078 - +0.5 532,078 - +0.4 532,078 - +0.4 532,078 - -0.3 532,082 + -0.5 532,082 + +1.0 532,082 + +0.4 532,082 + +0.6 532,086 + +1.1 532,086 + +0.6 532,087 - -1.1 532,087 - +1.0 532,162 - +1.1 532,162 - -0.2 532,162 - -0.1 532,162 - -2.0 532,237 - -1.2
Or see this region's nucleotide sequence