Strain Fitness in Rahnella sp. WP5 around EX31_RS23725

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23720 and EX31_RS23725 are separated by 66 nucleotidesEX31_RS23725 and EX31_RS23730 are separated by 40 nucleotidesEX31_RS23730 and EX31_RS23735 are separated by 64 nucleotides EX31_RS23720: EX31_RS23720 - excinuclease ABC subunit B, at 509,564 to 511,570 _RS23720 EX31_RS23725: EX31_RS23725 - DUF2132 domain-containing protein, at 511,637 to 512,005 _RS23725 EX31_RS23730: EX31_RS23730 - isochorismatase family protein, at 512,046 to 512,570 _RS23730 EX31_RS23735: EX31_RS23735 - uridine diphosphate-N-acetylglucosamine-binding protein YvcK, at 512,635 to 513,543 _RS23735 Position (kb) 511 512 513Strain fitness (log2 ratio) -2 -1 0 1 2at 510.730 kb on + strand, within EX31_RS23720at 510.730 kb on + strand, within EX31_RS23720at 510.734 kb on + strand, within EX31_RS23720at 510.734 kb on + strand, within EX31_RS23720at 510.734 kb on + strand, within EX31_RS23720at 510.734 kb on + strand, within EX31_RS23720at 510.734 kb on + strand, within EX31_RS23720at 510.734 kb on + strand, within EX31_RS23720at 510.734 kb on + strand, within EX31_RS23720at 510.734 kb on + strand, within EX31_RS23720at 510.734 kb on + strand, within EX31_RS23720at 510.735 kb on - strand, within EX31_RS23720at 510.735 kb on - strand, within EX31_RS23720at 510.735 kb on - strand, within EX31_RS23720at 510.758 kb on + strand, within EX31_RS23720at 510.759 kb on - strand, within EX31_RS23720at 510.934 kb on + strand, within EX31_RS23720at 510.956 kb on + strand, within EX31_RS23720at 511.027 kb on + strand, within EX31_RS23720at 511.078 kb on - strand, within EX31_RS23720at 511.220 kb on + strand, within EX31_RS23720at 511.228 kb on + strand, within EX31_RS23720at 511.295 kb on + strand, within EX31_RS23720at 511.295 kb on + strand, within EX31_RS23720at 511.295 kb on + strand, within EX31_RS23720at 511.295 kb on + strand, within EX31_RS23720at 511.295 kb on + strand, within EX31_RS23720at 511.295 kb on + strand, within EX31_RS23720at 511.295 kb on + strand, within EX31_RS23720at 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.478 kb on + strandat 511.479 kb on - strandat 511.479 kb on - strandat 511.479 kb on - strandat 511.479 kb on - strandat 511.479 kb on - strandat 511.583 kb on + strandat 511.584 kb on - strandat 511.645 kb on + strandat 511.645 kb on + strandat 511.645 kb on + strandat 511.645 kb on + strandat 511.646 kb on - strandat 511.646 kb on - strandat 511.723 kb on + strand, within EX31_RS23725at 511.759 kb on + strand, within EX31_RS23725at 511.760 kb on - strand, within EX31_RS23725at 511.832 kb on - strand, within EX31_RS23725at 511.850 kb on + strand, within EX31_RS23725at 512.066 kb on + strandat 512.066 kb on + strandat 512.079 kb on - strandat 512.110 kb on - strand, within EX31_RS23730at 512.224 kb on + strand, within EX31_RS23730at 512.224 kb on + strand, within EX31_RS23730at 512.224 kb on + strand, within EX31_RS23730at 512.225 kb on - strand, within EX31_RS23730at 512.225 kb on - strand, within EX31_RS23730at 512.225 kb on - strand, within EX31_RS23730at 512.236 kb on + strand, within EX31_RS23730at 512.236 kb on + strand, within EX31_RS23730at 512.236 kb on + strand, within EX31_RS23730at 512.267 kb on + strand, within EX31_RS23730at 512.290 kb on - strand, within EX31_RS23730at 512.339 kb on + strand, within EX31_RS23730at 512.339 kb on + strand, within EX31_RS23730at 512.372 kb on - strand, within EX31_RS23730at 512.406 kb on + strand, within EX31_RS23730at 512.406 kb on + strand, within EX31_RS23730at 512.406 kb on + strand, within EX31_RS23730at 512.439 kb on - strand, within EX31_RS23730at 512.466 kb on + strand, within EX31_RS23730at 512.467 kb on - strand, within EX31_RS23730at 512.486 kb on + strand, within EX31_RS23730at 512.487 kb on - strand, within EX31_RS23730at 512.506 kb on + strand, within EX31_RS23730at 512.507 kb on - strand, within EX31_RS23730at 512.616 kb on + strandat 512.616 kb on + strandat 512.616 kb on + strandat 512.617 kb on - strandat 512.617 kb on - strandat 512.617 kb on - strandat 512.617 kb on - strandat 512.618 kb on + strandat 512.630 kb on - strandat 512.821 kb on - strand, within EX31_RS23735at 512.888 kb on + strand, within EX31_RS23735at 512.888 kb on + strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.889 kb on - strand, within EX31_RS23735at 512.895 kb on + strand, within EX31_RS23735

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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510,730 + EX31_RS23720 0.58 -0.5
510,730 + EX31_RS23720 0.58 +0.1
510,734 + EX31_RS23720 0.58 -0.7
510,734 + EX31_RS23720 0.58 +0.3
510,734 + EX31_RS23720 0.58 +0.4
510,734 + EX31_RS23720 0.58 -0.1
510,734 + EX31_RS23720 0.58 +0.4
510,734 + EX31_RS23720 0.58 +0.6
510,734 + EX31_RS23720 0.58 -0.1
510,734 + EX31_RS23720 0.58 -0.4
510,734 + EX31_RS23720 0.58 -1.3
510,735 - EX31_RS23720 0.58 -1.1
510,735 - EX31_RS23720 0.58 +0.5
510,735 - EX31_RS23720 0.58 -1.0
510,758 + EX31_RS23720 0.59 +0.4
510,759 - EX31_RS23720 0.60 -0.7
510,934 + EX31_RS23720 0.68 -0.1
510,956 + EX31_RS23720 0.69 +0.5
511,027 + EX31_RS23720 0.73 +0.5
511,078 - EX31_RS23720 0.75 -1.8
511,220 + EX31_RS23720 0.83 -0.4
511,228 + EX31_RS23720 0.83 +1.4
511,295 + EX31_RS23720 0.86 -0.3
511,295 + EX31_RS23720 0.86 +0.8
511,295 + EX31_RS23720 0.86 +0.8
511,295 + EX31_RS23720 0.86 +0.7
511,295 + EX31_RS23720 0.86 -0.3
511,295 + EX31_RS23720 0.86 +1.1
511,295 + EX31_RS23720 0.86 +0.4
511,478 + +0.3
511,478 + -0.4
511,478 + +1.1
511,478 + +0.1
511,478 + +0.2
511,478 + -0.4
511,478 + -2.3
511,478 + -1.9
511,478 + +0.6
511,478 + +0.2
511,478 + -0.8
511,478 + +0.9
511,478 + +0.4
511,478 + -0.2
511,478 + -1.0
511,478 + -1.4
511,478 + -1.3
511,479 - +0.7
511,479 - +1.8
511,479 - -1.4
511,479 - -0.2
511,479 - +1.2
511,583 + -0.1
511,584 - -0.3
511,645 + -0.2
511,645 + +0.1
511,645 + +0.5
511,645 + +0.3
511,646 - -1.3
511,646 - -0.4
511,723 + EX31_RS23725 0.23 +0.0
511,759 + EX31_RS23725 0.33 -0.4
511,760 - EX31_RS23725 0.33 -1.6
511,832 - EX31_RS23725 0.53 -2.0
511,850 + EX31_RS23725 0.58 -0.5
512,066 + -0.5
512,066 + -1.1
512,079 - +1.6
512,110 - EX31_RS23730 0.12 -0.2
512,224 + EX31_RS23730 0.34 -0.3
512,224 + EX31_RS23730 0.34 -1.2
512,224 + EX31_RS23730 0.34 -0.2
512,225 - EX31_RS23730 0.34 +0.2
512,225 - EX31_RS23730 0.34 -0.7
512,225 - EX31_RS23730 0.34 +0.5
512,236 + EX31_RS23730 0.36 -0.7
512,236 + EX31_RS23730 0.36 +0.4
512,236 + EX31_RS23730 0.36 +0.3
512,267 + EX31_RS23730 0.42 +1.4
512,290 - EX31_RS23730 0.46 +0.0
512,339 + EX31_RS23730 0.56 +1.5
512,339 + EX31_RS23730 0.56 +0.6
512,372 - EX31_RS23730 0.62 +0.1
512,406 + EX31_RS23730 0.69 -0.4
512,406 + EX31_RS23730 0.69 +0.2
512,406 + EX31_RS23730 0.69 +0.4
512,439 - EX31_RS23730 0.75 +0.9
512,466 + EX31_RS23730 0.80 +0.3
512,467 - EX31_RS23730 0.80 +0.6
512,486 + EX31_RS23730 0.84 +1.7
512,487 - EX31_RS23730 0.84 -0.0
512,506 + EX31_RS23730 0.88 -0.4
512,507 - EX31_RS23730 0.88 +0.6
512,616 + +0.8
512,616 + -1.0
512,616 + +0.7
512,617 - -1.2
512,617 - -0.9
512,617 - +0.6
512,617 - -0.5
512,618 + -0.1
512,630 - -0.3
512,821 - EX31_RS23735 0.20 +0.1
512,888 + EX31_RS23735 0.28 -1.1
512,888 + EX31_RS23735 0.28 +0.8
512,889 - EX31_RS23735 0.28 +0.7
512,889 - EX31_RS23735 0.28 -0.8
512,889 - EX31_RS23735 0.28 -0.3
512,889 - EX31_RS23735 0.28 -0.0
512,889 - EX31_RS23735 0.28 +0.5
512,889 - EX31_RS23735 0.28 +0.3
512,889 - EX31_RS23735 0.28 -0.8
512,889 - EX31_RS23735 0.28 +0.4
512,889 - EX31_RS23735 0.28 +1.2
512,889 - EX31_RS23735 0.28 +0.3
512,889 - EX31_RS23735 0.28 -0.3
512,889 - EX31_RS23735 0.28 -0.9
512,889 - EX31_RS23735 0.28 +1.2
512,895 + EX31_RS23735 0.29 +1.1

Or see this region's nucleotide sequence