Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23160 and EX31_RS23165 overlap by 4 nucleotides EX31_RS23165 and EX31_RS23170 are separated by 2 nucleotides EX31_RS23170 and EX31_RS23175 are separated by 189 nucleotides
EX31_RS23160: EX31_RS23160 - amino acid ABC transporter ATP-binding protein, at 394,329 to 395,054
_RS23160
EX31_RS23165: EX31_RS23165 - glutamate/aspartate ABC transporter permease GltK, at 395,051 to 395,728
_RS23165
EX31_RS23170: EX31_RS23170 - amino acid ABC transporter permease, at 395,731 to 396,471
_RS23170
EX31_RS23175: EX31_RS23175 - amino acid ABC transporter substrate-binding protein, at 396,661 to 397,557
_RS23175
Position (kb) 395
396
397 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 394.983 kb on - strand at 395.024 kb on - strand at 395.107 kb on + strand at 395.108 kb on - strand at 395.115 kb on + strand at 395.115 kb on + strand at 395.116 kb on - strand at 395.116 kb on - strand at 395.119 kb on + strand, within EX31_RS23165 at 395.119 kb on + strand, within EX31_RS23165 at 395.119 kb on + strand, within EX31_RS23165 at 395.119 kb on + strand, within EX31_RS23165 at 395.119 kb on + strand, within EX31_RS23165 at 395.119 kb on + strand, within EX31_RS23165 at 395.119 kb on + strand, within EX31_RS23165 at 395.119 kb on + strand, within EX31_RS23165 at 395.119 kb on + strand, within EX31_RS23165 at 395.120 kb on - strand, within EX31_RS23165 at 395.120 kb on - strand, within EX31_RS23165 at 395.120 kb on - strand, within EX31_RS23165 at 395.120 kb on - strand, within EX31_RS23165 at 395.173 kb on + strand, within EX31_RS23165 at 395.173 kb on + strand, within EX31_RS23165 at 395.173 kb on + strand, within EX31_RS23165 at 395.173 kb on + strand, within EX31_RS23165 at 395.173 kb on + strand, within EX31_RS23165 at 395.174 kb on - strand, within EX31_RS23165 at 395.174 kb on - strand, within EX31_RS23165 at 395.174 kb on - strand, within EX31_RS23165 at 395.174 kb on - strand, within EX31_RS23165 at 395.174 kb on - strand, within EX31_RS23165 at 395.174 kb on - strand, within EX31_RS23165 at 395.211 kb on + strand, within EX31_RS23165 at 395.211 kb on + strand, within EX31_RS23165 at 395.212 kb on - strand, within EX31_RS23165 at 395.212 kb on - strand, within EX31_RS23165 at 395.212 kb on - strand, within EX31_RS23165 at 395.212 kb on - strand, within EX31_RS23165 at 395.235 kb on - strand, within EX31_RS23165 at 395.369 kb on - strand, within EX31_RS23165 at 395.395 kb on - strand, within EX31_RS23165 at 395.397 kb on + strand, within EX31_RS23165 at 395.397 kb on + strand, within EX31_RS23165 at 395.503 kb on - strand, within EX31_RS23165 at 395.553 kb on + strand, within EX31_RS23165 at 395.553 kb on + strand, within EX31_RS23165 at 395.553 kb on + strand, within EX31_RS23165 at 395.553 kb on + strand, within EX31_RS23165 at 395.554 kb on - strand, within EX31_RS23165 at 395.554 kb on - strand, within EX31_RS23165 at 395.651 kb on - strand, within EX31_RS23165 at 395.651 kb on - strand, within EX31_RS23165 at 395.651 kb on - strand, within EX31_RS23165 at 395.663 kb on - strand at 395.685 kb on + strand at 395.685 kb on + strand at 395.704 kb on + strand at 395.704 kb on + strand at 395.704 kb on + strand at 395.704 kb on + strand at 395.704 kb on + strand at 395.704 kb on + strand at 395.705 kb on - strand at 395.705 kb on - strand at 395.705 kb on - strand at 395.705 kb on - strand at 395.705 kb on - strand at 395.732 kb on + strand at 395.732 kb on + strand at 395.732 kb on + strand at 395.732 kb on + strand at 395.732 kb on + strand at 395.733 kb on - strand at 395.733 kb on - strand at 395.733 kb on - strand at 395.766 kb on + strand at 395.766 kb on + strand at 395.766 kb on + strand at 395.766 kb on + strand at 395.767 kb on - strand at 395.767 kb on - strand at 395.773 kb on + strand at 395.774 kb on - strand at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.816 kb on + strand, within EX31_RS23170 at 395.817 kb on - strand, within EX31_RS23170 at 395.817 kb on - strand, within EX31_RS23170 at 395.817 kb on - strand, within EX31_RS23170 at 395.817 kb on - strand, within EX31_RS23170 at 395.817 kb on - strand, within EX31_RS23170 at 395.817 kb on - strand, within EX31_RS23170 at 395.817 kb on - strand, within EX31_RS23170 at 395.817 kb on - strand, within EX31_RS23170 at 395.874 kb on + strand, within EX31_RS23170 at 395.978 kb on + strand, within EX31_RS23170 at 395.999 kb on + strand, within EX31_RS23170 at 396.000 kb on - strand, within EX31_RS23170 at 396.006 kb on - strand, within EX31_RS23170 at 396.022 kb on - strand, within EX31_RS23170 at 396.022 kb on - strand, within EX31_RS23170 at 396.148 kb on + strand, within EX31_RS23170 at 396.148 kb on + strand, within EX31_RS23170 at 396.148 kb on + strand, within EX31_RS23170 at 396.149 kb on - strand, within EX31_RS23170 at 396.149 kb on - strand, within EX31_RS23170 at 396.218 kb on + strand, within EX31_RS23170 at 396.241 kb on + strand, within EX31_RS23170 at 396.241 kb on + strand, within EX31_RS23170 at 396.241 kb on + strand, within EX31_RS23170 at 396.269 kb on + strand, within EX31_RS23170 at 396.270 kb on - strand, within EX31_RS23170 at 396.410 kb on + strand at 396.411 kb on - strand at 396.411 kb on - strand at 396.463 kb on + strand at 396.463 kb on + strand at 396.463 kb on + strand at 396.464 kb on - strand at 396.464 kb on - strand at 396.464 kb on - strand at 396.500 kb on - strand at 396.578 kb on + strand at 396.578 kb on + strand at 396.579 kb on - strand at 396.579 kb on - strand at 396.608 kb on - strand at 396.612 kb on + strand at 396.640 kb on + strand at 396.640 kb on + strand at 396.640 kb on + strand at 396.641 kb on - strand at 396.641 kb on - strand at 396.641 kb on - strand at 396.641 kb on - strand at 396.663 kb on - strand at 396.673 kb on - strand at 396.727 kb on - strand at 396.850 kb on - strand, within EX31_RS23175 at 396.866 kb on + strand, within EX31_RS23175 at 396.867 kb on - strand, within EX31_RS23175 at 396.990 kb on + strand, within EX31_RS23175 at 396.990 kb on + strand, within EX31_RS23175 at 397.093 kb on + strand, within EX31_RS23175 at 397.093 kb on + strand, within EX31_RS23175 at 397.094 kb on - strand, within EX31_RS23175 at 397.094 kb on - strand, within EX31_RS23175 at 397.113 kb on + strand, within EX31_RS23175 at 397.114 kb on - strand, within EX31_RS23175 at 397.131 kb on + strand, within EX31_RS23175 at 397.247 kb on + strand, within EX31_RS23175 at 397.247 kb on + strand, within EX31_RS23175 at 397.248 kb on - strand, within EX31_RS23175 at 397.361 kb on + strand, within EX31_RS23175 at 397.362 kb on - strand, within EX31_RS23175 at 397.373 kb on + strand, within EX31_RS23175 at 397.400 kb on + strand, within EX31_RS23175 at 397.400 kb on + strand, within EX31_RS23175 at 397.400 kb on + strand, within EX31_RS23175 at 397.401 kb on - strand, within EX31_RS23175 at 397.403 kb on + strand, within EX31_RS23175 at 397.404 kb on - strand, within EX31_RS23175 at 397.404 kb on - strand, within EX31_RS23175 at 397.404 kb on - strand, within EX31_RS23175
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 394,983 - -2.0 395,024 - -1.7 395,107 + -0.8 395,108 - -0.6 395,115 + +0.1 395,115 + -0.3 395,116 - -2.0 395,116 - +1.0 395,119 + EX31_RS23165 0.10 +1.1 395,119 + EX31_RS23165 0.10 -1.4 395,119 + EX31_RS23165 0.10 -0.2 395,119 + EX31_RS23165 0.10 +0.2 395,119 + EX31_RS23165 0.10 +0.5 395,119 + EX31_RS23165 0.10 -0.7 395,119 + EX31_RS23165 0.10 +0.5 395,119 + EX31_RS23165 0.10 +0.7 395,119 + EX31_RS23165 0.10 -1.7 395,120 - EX31_RS23165 0.10 -1.1 395,120 - EX31_RS23165 0.10 -0.1 395,120 - EX31_RS23165 0.10 +0.5 395,120 - EX31_RS23165 0.10 +0.1 395,173 + EX31_RS23165 0.18 -0.2 395,173 + EX31_RS23165 0.18 +0.1 395,173 + EX31_RS23165 0.18 +0.4 395,173 + EX31_RS23165 0.18 +1.0 395,173 + EX31_RS23165 0.18 -0.2 395,174 - EX31_RS23165 0.18 +0.8 395,174 - EX31_RS23165 0.18 +0.5 395,174 - EX31_RS23165 0.18 -0.6 395,174 - EX31_RS23165 0.18 -1.2 395,174 - EX31_RS23165 0.18 -0.5 395,174 - EX31_RS23165 0.18 -3.2 395,211 + EX31_RS23165 0.24 +0.0 395,211 + EX31_RS23165 0.24 +0.9 395,212 - EX31_RS23165 0.24 +0.1 395,212 - EX31_RS23165 0.24 +0.2 395,212 - EX31_RS23165 0.24 +0.1 395,212 - EX31_RS23165 0.24 +2.2 395,235 - EX31_RS23165 0.27 +1.2 395,369 - EX31_RS23165 0.47 -0.7 395,395 - EX31_RS23165 0.51 +1.1 395,397 + EX31_RS23165 0.51 +0.6 395,397 + EX31_RS23165 0.51 +0.1 395,503 - EX31_RS23165 0.67 +0.3 395,553 + EX31_RS23165 0.74 +0.4 395,553 + EX31_RS23165 0.74 -0.7 395,553 + EX31_RS23165 0.74 -2.4 395,553 + EX31_RS23165 0.74 +0.0 395,554 - EX31_RS23165 0.74 -0.2 395,554 - EX31_RS23165 0.74 +0.5 395,651 - EX31_RS23165 0.88 -1.4 395,651 - EX31_RS23165 0.88 -1.4 395,651 - EX31_RS23165 0.88 -0.6 395,663 - +1.1 395,685 + -0.1 395,685 + +0.0 395,704 + -0.8 395,704 + +0.8 395,704 + +0.2 395,704 + -2.0 395,704 + -1.3 395,704 + -0.4 395,705 - +1.3 395,705 - -0.3 395,705 - -3.0 395,705 - +0.1 395,705 - +0.8 395,732 + -0.1 395,732 + +1.0 395,732 + +1.0 395,732 + -0.7 395,732 + +0.7 395,733 - +0.0 395,733 - -0.9 395,733 - +1.7 395,766 + +1.3 395,766 + -2.1 395,766 + -0.7 395,766 + -1.1 395,767 - +0.1 395,767 - -0.7 395,773 + -0.2 395,774 - +0.5 395,816 + EX31_RS23170 0.11 -0.7 395,816 + EX31_RS23170 0.11 -0.2 395,816 + EX31_RS23170 0.11 -0.4 395,816 + EX31_RS23170 0.11 -0.7 395,816 + EX31_RS23170 0.11 +1.3 395,816 + EX31_RS23170 0.11 -0.4 395,816 + EX31_RS23170 0.11 -0.6 395,816 + EX31_RS23170 0.11 -2.5 395,816 + EX31_RS23170 0.11 -0.7 395,816 + EX31_RS23170 0.11 +0.2 395,816 + EX31_RS23170 0.11 -1.1 395,816 + EX31_RS23170 0.11 -0.3 395,816 + EX31_RS23170 0.11 -0.9 395,816 + EX31_RS23170 0.11 +0.4 395,816 + EX31_RS23170 0.11 +0.4 395,816 + EX31_RS23170 0.11 +0.5 395,817 - EX31_RS23170 0.12 -0.6 395,817 - EX31_RS23170 0.12 +0.7 395,817 - EX31_RS23170 0.12 -1.6 395,817 - EX31_RS23170 0.12 -2.8 395,817 - EX31_RS23170 0.12 +0.5 395,817 - EX31_RS23170 0.12 -0.7 395,817 - EX31_RS23170 0.12 -2.7 395,817 - EX31_RS23170 0.12 -0.1 395,874 + EX31_RS23170 0.19 -1.8 395,978 + EX31_RS23170 0.33 +0.2 395,999 + EX31_RS23170 0.36 -0.4 396,000 - EX31_RS23170 0.36 -0.1 396,006 - EX31_RS23170 0.37 -2.4 396,022 - EX31_RS23170 0.39 +1.6 396,022 - EX31_RS23170 0.39 -0.6 396,148 + EX31_RS23170 0.56 +0.6 396,148 + EX31_RS23170 0.56 -0.9 396,148 + EX31_RS23170 0.56 +0.1 396,149 - EX31_RS23170 0.56 -2.9 396,149 - EX31_RS23170 0.56 -0.4 396,218 + EX31_RS23170 0.66 -0.5 396,241 + EX31_RS23170 0.69 -2.8 396,241 + EX31_RS23170 0.69 -0.7 396,241 + EX31_RS23170 0.69 -3.0 396,269 + EX31_RS23170 0.73 -2.6 396,270 - EX31_RS23170 0.73 +0.5 396,410 + -0.7 396,411 - +0.6 396,411 - -0.5 396,463 + +1.5 396,463 + -0.5 396,463 + -0.3 396,464 - -2.2 396,464 - -0.6 396,464 - +0.5 396,500 - +0.8 396,578 + -0.6 396,578 + -1.4 396,579 - +0.9 396,579 - +1.3 396,608 - -0.3 396,612 + -0.9 396,640 + +1.9 396,640 + -0.5 396,640 + +0.3 396,641 - +0.6 396,641 - +0.2 396,641 - -0.6 396,641 - -0.6 396,663 - +1.1 396,673 - -0.3 396,727 - -1.5 396,850 - EX31_RS23175 0.21 -1.5 396,866 + EX31_RS23175 0.23 -2.3 396,867 - EX31_RS23175 0.23 +1.6 396,990 + EX31_RS23175 0.37 +0.7 396,990 + EX31_RS23175 0.37 -0.1 397,093 + EX31_RS23175 0.48 +0.1 397,093 + EX31_RS23175 0.48 -2.8 397,094 - EX31_RS23175 0.48 -0.2 397,094 - EX31_RS23175 0.48 +0.3 397,113 + EX31_RS23175 0.50 -0.9 397,114 - EX31_RS23175 0.51 -2.6 397,131 + EX31_RS23175 0.52 +0.2 397,247 + EX31_RS23175 0.65 -0.2 397,247 + EX31_RS23175 0.65 -0.2 397,248 - EX31_RS23175 0.65 +0.0 397,361 + EX31_RS23175 0.78 -0.2 397,362 - EX31_RS23175 0.78 +0.4 397,373 + EX31_RS23175 0.79 +0.8 397,400 + EX31_RS23175 0.82 -0.2 397,400 + EX31_RS23175 0.82 +0.8 397,400 + EX31_RS23175 0.82 -0.1 397,401 - EX31_RS23175 0.82 -1.8 397,403 + EX31_RS23175 0.83 +0.3 397,404 - EX31_RS23175 0.83 -0.2 397,404 - EX31_RS23175 0.83 +1.6 397,404 - EX31_RS23175 0.83 -1.2
Or see this region's nucleotide sequence