Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23025 and EX31_RS23030 are separated by 177 nucleotides EX31_RS23030 and EX31_RS23035 are separated by 65 nucleotides
EX31_RS23025: EX31_RS23025 - DUF2076 domain-containing protein, at 368,152 to 368,895
_RS23025
EX31_RS23030: EX31_RS23030 - transcription antiterminator/RNA stability regulator CspE, at 369,073 to 369,282
_RS23030
EX31_RS23035: EX31_RS23035 - multidrug effflux MFS transporter, at 369,348 to 370,535
_RS23035
Position (kb) 369
370 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 368.073 kb on + strand at 368.074 kb on - strand at 368.079 kb on + strand at 368.079 kb on + strand at 368.079 kb on + strand at 368.079 kb on + strand at 368.079 kb on + strand at 368.079 kb on + strand at 368.079 kb on + strand at 368.079 kb on + strand at 368.080 kb on - strand at 368.080 kb on - strand at 368.082 kb on + strand at 368.082 kb on + strand at 368.082 kb on + strand at 368.083 kb on - strand at 368.087 kb on + strand at 368.087 kb on + strand at 368.127 kb on + strand at 368.127 kb on + strand at 368.127 kb on + strand at 368.128 kb on - strand at 368.134 kb on + strand at 368.134 kb on + strand at 368.134 kb on + strand at 368.135 kb on - strand at 368.135 kb on - strand at 368.135 kb on - strand at 368.135 kb on - strand at 368.135 kb on - strand at 368.135 kb on - strand at 368.175 kb on - strand at 368.190 kb on + strand at 368.198 kb on + strand at 368.198 kb on + strand at 368.198 kb on + strand at 368.198 kb on + strand at 368.198 kb on + strand at 368.198 kb on + strand at 368.198 kb on + strand at 368.290 kb on + strand, within EX31_RS23025 at 368.290 kb on + strand, within EX31_RS23025 at 368.290 kb on + strand, within EX31_RS23025 at 368.290 kb on + strand, within EX31_RS23025 at 368.290 kb on + strand, within EX31_RS23025 at 368.290 kb on + strand, within EX31_RS23025 at 368.291 kb on - strand, within EX31_RS23025 at 368.291 kb on - strand, within EX31_RS23025 at 368.291 kb on - strand, within EX31_RS23025 at 368.291 kb on - strand, within EX31_RS23025 at 368.291 kb on - strand, within EX31_RS23025 at 368.291 kb on - strand, within EX31_RS23025 at 368.348 kb on + strand, within EX31_RS23025 at 368.539 kb on + strand, within EX31_RS23025 at 368.540 kb on - strand, within EX31_RS23025 at 368.655 kb on + strand, within EX31_RS23025 at 368.704 kb on - strand, within EX31_RS23025 at 368.760 kb on + strand, within EX31_RS23025 at 368.909 kb on + strand at 368.909 kb on + strand at 368.909 kb on + strand at 368.910 kb on - strand at 368.910 kb on - strand at 368.910 kb on - strand at 368.918 kb on + strand at 368.918 kb on + strand at 368.972 kb on + strand at 369.021 kb on + strand at 369.059 kb on + strand at 369.059 kb on + strand at 369.060 kb on - strand at 369.060 kb on - strand at 369.078 kb on + strand at 369.078 kb on + strand at 369.078 kb on + strand at 369.078 kb on + strand at 369.079 kb on - strand at 369.084 kb on + strand at 369.085 kb on - strand at 369.090 kb on + strand at 369.096 kb on + strand, within EX31_RS23030 at 369.096 kb on + strand, within EX31_RS23030 at 369.096 kb on + strand, within EX31_RS23030 at 369.132 kb on + strand, within EX31_RS23030 at 369.264 kb on + strand at 369.359 kb on + strand at 369.485 kb on + strand, within EX31_RS23035 at 369.485 kb on + strand, within EX31_RS23035 at 369.485 kb on + strand, within EX31_RS23035 at 369.485 kb on + strand, within EX31_RS23035 at 369.486 kb on - strand, within EX31_RS23035 at 369.486 kb on - strand, within EX31_RS23035 at 369.486 kb on - strand, within EX31_RS23035 at 369.486 kb on - strand, within EX31_RS23035 at 369.486 kb on - strand, within EX31_RS23035 at 369.566 kb on + strand, within EX31_RS23035 at 369.567 kb on - strand, within EX31_RS23035 at 369.606 kb on + strand, within EX31_RS23035 at 369.802 kb on + strand, within EX31_RS23035 at 369.803 kb on - strand, within EX31_RS23035 at 369.803 kb on - strand, within EX31_RS23035 at 369.837 kb on - strand, within EX31_RS23035 at 369.838 kb on + strand, within EX31_RS23035 at 369.839 kb on - strand, within EX31_RS23035 at 369.839 kb on - strand, within EX31_RS23035 at 369.857 kb on + strand, within EX31_RS23035 at 369.858 kb on - strand, within EX31_RS23035 at 369.858 kb on - strand, within EX31_RS23035 at 369.861 kb on - strand, within EX31_RS23035 at 369.861 kb on - strand, within EX31_RS23035 at 370.005 kb on + strand, within EX31_RS23035 at 370.006 kb on - strand, within EX31_RS23035 at 370.006 kb on - strand, within EX31_RS23035 at 370.006 kb on - strand, within EX31_RS23035 at 370.154 kb on - strand, within EX31_RS23035 at 370.154 kb on - strand, within EX31_RS23035
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 368,073 + -0.5 368,074 - -0.5 368,079 + +1.4 368,079 + +0.4 368,079 + -0.8 368,079 + +0.3 368,079 + -0.8 368,079 + +0.8 368,079 + +0.0 368,079 + -0.1 368,080 - +0.3 368,080 - +1.4 368,082 + -0.2 368,082 + -0.1 368,082 + +0.2 368,083 - +0.3 368,087 + -0.1 368,087 + -1.0 368,127 + +0.2 368,127 + -0.6 368,127 + -0.2 368,128 - -0.9 368,134 + -0.1 368,134 + +0.1 368,134 + -0.7 368,135 - -2.1 368,135 - +0.4 368,135 - -0.1 368,135 - +0.2 368,135 - +0.6 368,135 - -3.3 368,175 - +0.8 368,190 + -0.5 368,198 + +0.4 368,198 + -0.4 368,198 + -1.4 368,198 + +0.9 368,198 + +1.0 368,198 + +0.2 368,198 + +0.1 368,290 + EX31_RS23025 0.19 +1.1 368,290 + EX31_RS23025 0.19 -0.3 368,290 + EX31_RS23025 0.19 -0.4 368,290 + EX31_RS23025 0.19 +0.7 368,290 + EX31_RS23025 0.19 -2.3 368,290 + EX31_RS23025 0.19 -0.1 368,291 - EX31_RS23025 0.19 +1.3 368,291 - EX31_RS23025 0.19 -1.2 368,291 - EX31_RS23025 0.19 -0.9 368,291 - EX31_RS23025 0.19 +1.0 368,291 - EX31_RS23025 0.19 -1.3 368,291 - EX31_RS23025 0.19 +0.8 368,348 + EX31_RS23025 0.26 +0.0 368,539 + EX31_RS23025 0.52 +0.3 368,540 - EX31_RS23025 0.52 -0.1 368,655 + EX31_RS23025 0.68 +0.6 368,704 - EX31_RS23025 0.74 -0.3 368,760 + EX31_RS23025 0.82 -0.3 368,909 + +0.3 368,909 + -1.3 368,909 + +0.8 368,910 - +0.0 368,910 - +1.2 368,910 - +1.0 368,918 + +0.6 368,918 + -0.2 368,972 + +0.6 369,021 + -0.8 369,059 + -0.7 369,059 + +0.8 369,060 - +0.7 369,060 - +0.6 369,078 + -0.4 369,078 + -0.4 369,078 + +0.5 369,078 + -0.0 369,079 - -0.5 369,084 + -0.5 369,085 - +1.2 369,090 + +0.8 369,096 + EX31_RS23030 0.11 -0.7 369,096 + EX31_RS23030 0.11 -0.3 369,096 + EX31_RS23030 0.11 -1.2 369,132 + EX31_RS23030 0.28 -0.0 369,264 + -0.3 369,359 + -1.3 369,485 + EX31_RS23035 0.12 +1.4 369,485 + EX31_RS23035 0.12 -0.9 369,485 + EX31_RS23035 0.12 +0.2 369,485 + EX31_RS23035 0.12 -1.6 369,486 - EX31_RS23035 0.12 +1.0 369,486 - EX31_RS23035 0.12 -0.4 369,486 - EX31_RS23035 0.12 -0.0 369,486 - EX31_RS23035 0.12 -0.2 369,486 - EX31_RS23035 0.12 +0.3 369,566 + EX31_RS23035 0.18 -0.1 369,567 - EX31_RS23035 0.18 -2.4 369,606 + EX31_RS23035 0.22 +0.4 369,802 + EX31_RS23035 0.38 +0.1 369,803 - EX31_RS23035 0.38 -0.8 369,803 - EX31_RS23035 0.38 -1.3 369,837 - EX31_RS23035 0.41 +0.2 369,838 + EX31_RS23035 0.41 -0.3 369,839 - EX31_RS23035 0.41 -0.7 369,839 - EX31_RS23035 0.41 -0.8 369,857 + EX31_RS23035 0.43 +0.7 369,858 - EX31_RS23035 0.43 -0.5 369,858 - EX31_RS23035 0.43 +0.6 369,861 - EX31_RS23035 0.43 -1.1 369,861 - EX31_RS23035 0.43 -0.2 370,005 + EX31_RS23035 0.55 -0.6 370,006 - EX31_RS23035 0.55 +1.1 370,006 - EX31_RS23035 0.55 +0.1 370,006 - EX31_RS23035 0.55 +0.3 370,154 - EX31_RS23035 0.68 -0.3 370,154 - EX31_RS23035 0.68 -0.8
Or see this region's nucleotide sequence