Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22660 and EX31_RS22665 are separated by 9 nucleotides EX31_RS22665 and EX31_RS22670 are separated by 504 nucleotides
EX31_RS22660: EX31_RS22660 - magnesium transporter, at 288,978 to 290,417
_RS22660
EX31_RS22665: EX31_RS22665 - DUF2633 family protein, at 290,427 to 290,645
_RS22665
EX31_RS22670: EX31_RS22670 - sensor domain-containing phosphodiesterase, at 291,150 to 293,390
_RS22670
Position (kb) 290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 289.446 kb on - strand, within EX31_RS22660 at 289.524 kb on + strand, within EX31_RS22660 at 289.525 kb on - strand, within EX31_RS22660 at 289.525 kb on - strand, within EX31_RS22660 at 289.525 kb on - strand, within EX31_RS22660 at 289.542 kb on + strand, within EX31_RS22660 at 289.542 kb on + strand, within EX31_RS22660 at 289.542 kb on + strand, within EX31_RS22660 at 289.543 kb on - strand, within EX31_RS22660 at 289.543 kb on - strand, within EX31_RS22660 at 289.547 kb on + strand, within EX31_RS22660 at 289.648 kb on + strand, within EX31_RS22660 at 289.649 kb on - strand, within EX31_RS22660 at 289.649 kb on - strand, within EX31_RS22660 at 289.649 kb on - strand, within EX31_RS22660 at 289.736 kb on + strand, within EX31_RS22660 at 289.736 kb on + strand, within EX31_RS22660 at 289.838 kb on + strand, within EX31_RS22660 at 289.838 kb on + strand, within EX31_RS22660 at 289.914 kb on - strand, within EX31_RS22660 at 289.914 kb on - strand, within EX31_RS22660 at 290.017 kb on + strand, within EX31_RS22660 at 290.017 kb on + strand, within EX31_RS22660 at 290.029 kb on + strand, within EX31_RS22660 at 290.029 kb on + strand, within EX31_RS22660 at 290.029 kb on + strand, within EX31_RS22660 at 290.206 kb on - strand, within EX31_RS22660 at 290.206 kb on - strand, within EX31_RS22660 at 290.318 kb on + strand at 290.318 kb on + strand at 290.319 kb on - strand at 290.429 kb on - strand at 290.494 kb on - strand, within EX31_RS22665 at 290.494 kb on - strand, within EX31_RS22665 at 290.494 kb on - strand, within EX31_RS22665 at 290.567 kb on - strand, within EX31_RS22665 at 290.588 kb on + strand, within EX31_RS22665 at 290.588 kb on + strand, within EX31_RS22665 at 290.589 kb on - strand, within EX31_RS22665 at 290.645 kb on + strand at 290.645 kb on + strand at 290.646 kb on - strand at 290.646 kb on - strand at 290.646 kb on - strand at 290.646 kb on - strand at 290.658 kb on + strand at 290.658 kb on + strand at 290.662 kb on + strand at 290.662 kb on + strand at 290.663 kb on - strand at 290.663 kb on - strand at 290.710 kb on + strand at 290.710 kb on + strand at 290.715 kb on + strand at 290.715 kb on + strand at 290.716 kb on - strand at 290.716 kb on - strand at 290.716 kb on - strand at 290.716 kb on - strand at 290.717 kb on + strand at 290.717 kb on + strand at 290.717 kb on + strand at 290.717 kb on + strand at 290.717 kb on + strand at 290.717 kb on + strand at 290.717 kb on + strand at 290.718 kb on - strand at 290.718 kb on - strand at 290.718 kb on - strand at 290.718 kb on - strand at 290.718 kb on - strand at 290.718 kb on - strand at 290.719 kb on + strand at 290.719 kb on + strand at 290.719 kb on + strand at 290.720 kb on - strand at 290.720 kb on - strand at 290.753 kb on + strand at 290.780 kb on + strand at 290.782 kb on + strand at 290.782 kb on + strand at 290.783 kb on - strand at 290.817 kb on - strand at 290.937 kb on + strand at 290.942 kb on + strand at 290.952 kb on + strand at 290.952 kb on + strand at 290.965 kb on + strand at 290.965 kb on + strand at 290.965 kb on + strand at 290.996 kb on + strand at 290.997 kb on - strand at 291.038 kb on + strand at 291.038 kb on + strand at 291.039 kb on - strand at 291.046 kb on + strand at 291.046 kb on + strand at 291.046 kb on + strand at 291.047 kb on - strand at 291.098 kb on + strand at 291.098 kb on + strand at 291.098 kb on + strand at 291.098 kb on + strand at 291.098 kb on + strand at 291.099 kb on - strand at 291.101 kb on + strand at 291.101 kb on + strand at 291.101 kb on + strand at 291.101 kb on + strand at 291.102 kb on - strand at 291.102 kb on - strand at 291.102 kb on - strand at 291.102 kb on - strand at 291.102 kb on - strand at 291.194 kb on + strand at 291.284 kb on + strand at 291.284 kb on + strand at 291.285 kb on - strand at 291.285 kb on - strand at 291.288 kb on + strand at 291.288 kb on + strand at 291.288 kb on + strand at 291.288 kb on + strand at 291.288 kb on + strand at 291.289 kb on - strand at 291.289 kb on - strand at 291.289 kb on - strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.297 kb on + strand at 291.298 kb on - strand at 291.298 kb on - strand at 291.298 kb on - strand at 291.299 kb on + strand at 291.333 kb on + strand at 291.334 kb on + strand at 291.387 kb on + strand, within EX31_RS22670 at 291.388 kb on - strand, within EX31_RS22670 at 291.432 kb on + strand, within EX31_RS22670 at 291.559 kb on + strand, within EX31_RS22670 at 291.559 kb on + strand, within EX31_RS22670 at 291.560 kb on - strand, within EX31_RS22670 at 291.560 kb on - strand, within EX31_RS22670 at 291.613 kb on - strand, within EX31_RS22670
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 289,446 - EX31_RS22660 0.33 +1.2 289,524 + EX31_RS22660 0.38 -0.4 289,525 - EX31_RS22660 0.38 -0.7 289,525 - EX31_RS22660 0.38 +0.7 289,525 - EX31_RS22660 0.38 +0.8 289,542 + EX31_RS22660 0.39 +0.6 289,542 + EX31_RS22660 0.39 +0.8 289,542 + EX31_RS22660 0.39 +0.5 289,543 - EX31_RS22660 0.39 -0.1 289,543 - EX31_RS22660 0.39 +0.8 289,547 + EX31_RS22660 0.40 +0.7 289,648 + EX31_RS22660 0.47 +0.9 289,649 - EX31_RS22660 0.47 -0.5 289,649 - EX31_RS22660 0.47 -0.6 289,649 - EX31_RS22660 0.47 +0.4 289,736 + EX31_RS22660 0.53 +1.9 289,736 + EX31_RS22660 0.53 +1.8 289,838 + EX31_RS22660 0.60 +0.3 289,838 + EX31_RS22660 0.60 +0.6 289,914 - EX31_RS22660 0.65 +0.3 289,914 - EX31_RS22660 0.65 -1.1 290,017 + EX31_RS22660 0.72 -0.3 290,017 + EX31_RS22660 0.72 +0.2 290,029 + EX31_RS22660 0.73 -1.3 290,029 + EX31_RS22660 0.73 +0.2 290,029 + EX31_RS22660 0.73 -0.8 290,206 - EX31_RS22660 0.85 +0.5 290,206 - EX31_RS22660 0.85 -0.3 290,318 + +0.2 290,318 + +0.4 290,319 - +0.3 290,429 - -0.8 290,494 - EX31_RS22665 0.31 +0.1 290,494 - EX31_RS22665 0.31 -1.6 290,494 - EX31_RS22665 0.31 -1.0 290,567 - EX31_RS22665 0.64 +0.7 290,588 + EX31_RS22665 0.74 +0.3 290,588 + EX31_RS22665 0.74 -1.4 290,589 - EX31_RS22665 0.74 -1.0 290,645 + +0.2 290,645 + -1.0 290,646 - -0.7 290,646 - +0.7 290,646 - +1.0 290,646 - +0.7 290,658 + +0.2 290,658 + -2.8 290,662 + -0.3 290,662 + -0.1 290,663 - +0.1 290,663 - -0.8 290,710 + -0.4 290,710 + -0.3 290,715 + -0.6 290,715 + -0.4 290,716 - -0.1 290,716 - +0.7 290,716 - +0.5 290,716 - -2.0 290,717 + -2.0 290,717 + +1.0 290,717 + +0.2 290,717 + -2.0 290,717 + -0.1 290,717 + +0.4 290,717 + +1.1 290,718 - +0.1 290,718 - +0.9 290,718 - +0.3 290,718 - +0.7 290,718 - +0.9 290,718 - +0.7 290,719 + +0.5 290,719 + +0.9 290,719 + +0.3 290,720 - -0.4 290,720 - +0.8 290,753 + -0.5 290,780 + +0.1 290,782 + -1.1 290,782 + +1.2 290,783 - +0.1 290,817 - -0.7 290,937 + +1.0 290,942 + +0.5 290,952 + -0.7 290,952 + -1.4 290,965 + +0.9 290,965 + -0.1 290,965 + -0.4 290,996 + +1.0 290,997 - -0.3 291,038 + +0.0 291,038 + +0.4 291,039 - +0.6 291,046 + -0.8 291,046 + +0.4 291,046 + +0.9 291,047 - +0.6 291,098 + +0.2 291,098 + -0.2 291,098 + -0.3 291,098 + +0.4 291,098 + -0.6 291,099 - +0.6 291,101 + -0.5 291,101 + -0.3 291,101 + +0.3 291,101 + +0.7 291,102 - -0.3 291,102 - -0.7 291,102 - +0.2 291,102 - +0.2 291,102 - +0.1 291,194 + -0.6 291,284 + -0.7 291,284 + -0.5 291,285 - +2.0 291,285 - -2.0 291,288 + +0.6 291,288 + +0.4 291,288 + -0.1 291,288 + -0.2 291,288 + -0.7 291,289 - -1.5 291,289 - +1.2 291,289 - -0.9 291,297 + -0.3 291,297 + -0.6 291,297 + +0.8 291,297 + -0.9 291,297 + -0.8 291,297 + +1.3 291,297 + -1.1 291,297 + +0.2 291,297 + +0.1 291,297 + -0.1 291,297 + -0.0 291,297 + +1.0 291,297 + +0.3 291,297 + +1.0 291,298 - -2.8 291,298 - -0.8 291,298 - +0.7 291,299 + -1.2 291,333 + -0.5 291,334 + -0.6 291,387 + EX31_RS22670 0.11 -0.2 291,388 - EX31_RS22670 0.11 +0.8 291,432 + EX31_RS22670 0.13 +0.2 291,559 + EX31_RS22670 0.18 +0.0 291,559 + EX31_RS22670 0.18 -0.1 291,560 - EX31_RS22670 0.18 +0.4 291,560 - EX31_RS22670 0.18 +0.5 291,613 - EX31_RS22670 0.21 +0.2
Or see this region's nucleotide sequence