Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21470 and EX31_RS21475 are separated by 311 nucleotides EX31_RS21475 and EX31_RS21480 are separated by 270 nucleotides EX31_RS21480 and EX31_RS21485 are separated by 270 nucleotides EX31_RS21485 and EX31_RS21490 are separated by 253 nucleotides
EX31_RS21470: EX31_RS21470 - phosphoglycerate dehydrogenase, at 36,949 to 38,187
_RS21470
EX31_RS21475: EX31_RS21475 - acid resistance repetitive basic protein Asr, at 38,499 to 38,849
_RS21475
EX31_RS21480: EX31_RS21480 - 5-formyltetrahydrofolate cyclo-ligase, at 39,120 to 39,716
_RS21480
EX31_RS21485: EX31_RS21485 - cell division protein ZapA, at 39,987 to 40,316
_RS21485
EX31_RS21490: EX31_RS21490 - YecA family protein, at 40,570 to 41,142
_RS21490
Position (kb) 39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 38.188 kb on + strand at 38.188 kb on + strand at 38.188 kb on + strand at 38.188 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.242 kb on + strand at 38.242 kb on + strand at 38.258 kb on + strand at 38.280 kb on + strand at 38.280 kb on + strand at 38.280 kb on + strand at 38.280 kb on + strand at 38.281 kb on - strand at 38.307 kb on - strand at 38.391 kb on - strand at 38.456 kb on + strand at 38.456 kb on + strand at 38.457 kb on - strand at 38.457 kb on - strand at 38.490 kb on - strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.501 kb on - strand at 38.501 kb on - strand at 38.501 kb on - strand at 38.501 kb on - strand at 38.537 kb on + strand, within EX31_RS21475 at 38.537 kb on + strand, within EX31_RS21475 at 38.538 kb on - strand, within EX31_RS21475 at 38.714 kb on + strand, within EX31_RS21475 at 38.714 kb on + strand, within EX31_RS21475 at 38.714 kb on + strand, within EX31_RS21475 at 38.714 kb on + strand, within EX31_RS21475 at 38.715 kb on - strand, within EX31_RS21475 at 38.715 kb on - strand, within EX31_RS21475 at 38.754 kb on - strand, within EX31_RS21475 at 38.835 kb on + strand at 38.835 kb on + strand at 38.835 kb on + strand at 38.835 kb on + strand at 38.835 kb on + strand at 38.838 kb on + strand at 38.910 kb on + strand at 38.911 kb on - strand at 38.913 kb on + strand at 38.914 kb on - strand at 38.914 kb on - strand at 38.914 kb on - strand at 38.969 kb on + strand at 38.988 kb on + strand at 39.106 kb on + strand at 39.107 kb on - strand at 39.107 kb on - strand at 39.107 kb on - strand at 39.107 kb on - strand at 39.109 kb on - strand at 39.160 kb on - strand at 39.160 kb on - strand at 39.187 kb on - strand, within EX31_RS21480 at 39.268 kb on + strand, within EX31_RS21480 at 39.269 kb on - strand, within EX31_RS21480 at 39.288 kb on + strand, within EX31_RS21480 at 39.288 kb on + strand, within EX31_RS21480 at 39.288 kb on + strand, within EX31_RS21480 at 39.289 kb on - strand, within EX31_RS21480 at 39.289 kb on - strand, within EX31_RS21480 at 39.425 kb on + strand, within EX31_RS21480 at 39.425 kb on + strand, within EX31_RS21480 at 39.425 kb on + strand, within EX31_RS21480 at 39.426 kb on - strand, within EX31_RS21480 at 39.426 kb on - strand, within EX31_RS21480 at 39.428 kb on - strand, within EX31_RS21480 at 39.647 kb on + strand, within EX31_RS21480 at 39.647 kb on + strand, within EX31_RS21480 at 39.648 kb on - strand, within EX31_RS21480 at 39.664 kb on - strand at 39.710 kb on - strand at 39.710 kb on - strand at 39.716 kb on + strand at 39.716 kb on + strand at 39.716 kb on + strand at 39.717 kb on - strand at 39.717 kb on - strand at 39.717 kb on - strand at 39.717 kb on - strand at 39.717 kb on - strand at 39.717 kb on - strand at 39.720 kb on + strand at 39.720 kb on + strand at 39.720 kb on + strand at 39.720 kb on + strand at 39.720 kb on + strand at 39.720 kb on + strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.742 kb on - strand at 39.742 kb on - strand at 39.831 kb on - strand at 39.891 kb on + strand at 39.892 kb on - strand at 39.892 kb on - strand at 39.892 kb on - strand at 39.896 kb on - strand at 40.069 kb on - strand, within EX31_RS21485 at 40.071 kb on - strand, within EX31_RS21485 at 40.071 kb on - strand, within EX31_RS21485 at 40.071 kb on - strand, within EX31_RS21485 at 40.071 kb on - strand, within EX31_RS21485 at 40.071 kb on - strand, within EX31_RS21485 at 40.071 kb on - strand, within EX31_RS21485 at 40.071 kb on - strand, within EX31_RS21485 at 40.071 kb on - strand, within EX31_RS21485 at 40.071 kb on - strand, within EX31_RS21485 at 40.071 kb on - strand, within EX31_RS21485 at 40.083 kb on - strand, within EX31_RS21485 at 40.094 kb on - strand, within EX31_RS21485 at 40.094 kb on - strand, within EX31_RS21485 at 40.094 kb on - strand, within EX31_RS21485 at 40.135 kb on - strand, within EX31_RS21485 at 40.135 kb on - strand, within EX31_RS21485 at 40.135 kb on - strand, within EX31_RS21485 at 40.135 kb on - strand, within EX31_RS21485 at 40.135 kb on - strand, within EX31_RS21485 at 40.135 kb on - strand, within EX31_RS21485 at 40.135 kb on - strand, within EX31_RS21485 at 40.135 kb on - strand, within EX31_RS21485 at 40.135 kb on - strand, within EX31_RS21485 at 40.135 kb on - strand, within EX31_RS21485 at 40.135 kb on - strand, within EX31_RS21485 at 40.135 kb on - strand, within EX31_RS21485 at 40.182 kb on - strand, within EX31_RS21485 at 40.182 kb on - strand, within EX31_RS21485 at 40.295 kb on + strand at 40.295 kb on + strand at 40.296 kb on - strand at 40.336 kb on - strand at 40.361 kb on - strand at 40.361 kb on - strand at 40.396 kb on + strand at 40.396 kb on + strand at 40.396 kb on + strand at 40.397 kb on - strand at 40.397 kb on - strand at 40.397 kb on - strand at 40.397 kb on - strand at 40.397 kb on - strand at 40.397 kb on - strand at 40.397 kb on - strand at 40.397 kb on - strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.398 kb on + strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.399 kb on - strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.411 kb on - strand at 40.418 kb on + strand at 40.418 kb on + strand at 40.418 kb on + strand at 40.419 kb on - strand at 40.419 kb on - strand at 40.419 kb on - strand at 40.475 kb on + strand at 40.500 kb on - strand at 40.507 kb on + strand at 40.507 kb on + strand at 40.508 kb on - strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.533 kb on + strand at 40.533 kb on + strand at 40.533 kb on + strand at 40.533 kb on + strand at 40.534 kb on - strand at 40.534 kb on - strand at 40.534 kb on - strand at 40.544 kb on + strand at 40.544 kb on + strand at 40.544 kb on + strand at 40.575 kb on + strand at 40.575 kb on + strand at 40.575 kb on + strand at 40.575 kb on + strand at 40.575 kb on + strand at 40.575 kb on + strand at 40.575 kb on + strand at 40.576 kb on - strand at 40.576 kb on - strand at 40.576 kb on - strand at 40.576 kb on - strand at 40.576 kb on - strand at 40.578 kb on - strand at 40.584 kb on + strand at 40.584 kb on + strand at 40.584 kb on + strand at 40.584 kb on + strand at 40.584 kb on + strand at 40.584 kb on + strand at 40.584 kb on + strand at 40.585 kb on - strand at 40.585 kb on - strand at 40.585 kb on - strand at 40.588 kb on + strand at 40.588 kb on + strand at 40.589 kb on - strand at 40.593 kb on + strand at 40.593 kb on + strand at 40.593 kb on + strand at 40.593 kb on + strand at 40.593 kb on + strand at 40.593 kb on + strand at 40.593 kb on + strand at 40.594 kb on - strand at 40.594 kb on - strand at 40.594 kb on - strand at 40.597 kb on + strand at 40.597 kb on + strand at 40.597 kb on + strand at 40.598 kb on - strand at 40.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 38,188 + -0.4 38,188 + -0.1 38,188 + -0.1 38,188 + +1.1 38,212 + +0.0 38,212 + -0.5 38,212 + +1.0 38,212 + +0.4 38,212 + +0.6 38,212 + +1.0 38,242 + +0.1 38,242 + -0.8 38,258 + +0.5 38,280 + +1.5 38,280 + +0.1 38,280 + -0.2 38,280 + -0.5 38,281 - +0.3 38,307 - +1.0 38,391 - -0.2 38,456 + -0.3 38,456 + +0.4 38,457 - -0.5 38,457 - +0.7 38,490 - -0.3 38,500 + +0.5 38,500 + -0.3 38,500 + -0.3 38,500 + -0.5 38,500 + -0.4 38,500 + -0.6 38,501 - +1.4 38,501 - +1.0 38,501 - -0.4 38,501 - -0.9 38,537 + EX31_RS21475 0.11 +0.6 38,537 + EX31_RS21475 0.11 -0.8 38,538 - EX31_RS21475 0.11 -0.2 38,714 + EX31_RS21475 0.61 -0.1 38,714 + EX31_RS21475 0.61 +0.8 38,714 + EX31_RS21475 0.61 -0.5 38,714 + EX31_RS21475 0.61 -0.5 38,715 - EX31_RS21475 0.62 -1.1 38,715 - EX31_RS21475 0.62 +0.2 38,754 - EX31_RS21475 0.73 +0.8 38,835 + +0.6 38,835 + -1.0 38,835 + -1.2 38,835 + -1.2 38,835 + +1.8 38,838 + +1.1 38,910 + +0.3 38,911 - -0.7 38,913 + -0.2 38,914 - +0.5 38,914 - -1.5 38,914 - +1.2 38,969 + -1.0 38,988 + +0.5 39,106 + +0.4 39,107 - +0.4 39,107 - +0.2 39,107 - +0.1 39,107 - -2.0 39,109 - -0.3 39,160 - +0.9 39,160 - -1.3 39,187 - EX31_RS21480 0.11 -1.1 39,268 + EX31_RS21480 0.25 -3.1 39,269 - EX31_RS21480 0.25 +0.6 39,288 + EX31_RS21480 0.28 +0.2 39,288 + EX31_RS21480 0.28 -0.8 39,288 + EX31_RS21480 0.28 -0.6 39,289 - EX31_RS21480 0.28 +0.3 39,289 - EX31_RS21480 0.28 -0.4 39,425 + EX31_RS21480 0.51 +0.1 39,425 + EX31_RS21480 0.51 -1.0 39,425 + EX31_RS21480 0.51 -1.0 39,426 - EX31_RS21480 0.51 -2.1 39,426 - EX31_RS21480 0.51 -1.2 39,428 - EX31_RS21480 0.52 +0.0 39,647 + EX31_RS21480 0.88 +0.2 39,647 + EX31_RS21480 0.88 +0.8 39,648 - EX31_RS21480 0.88 +0.5 39,664 - -1.6 39,710 - +0.9 39,710 - +0.5 39,716 + +3.1 39,716 + +0.2 39,716 + +0.3 39,717 - +0.2 39,717 - -0.8 39,717 - -0.2 39,717 - +0.0 39,717 - -0.4 39,717 - -0.5 39,720 + -0.6 39,720 + -0.9 39,720 + +0.2 39,720 + +0.3 39,720 + -0.6 39,720 + -0.2 39,721 - -0.9 39,721 - +0.1 39,721 - -0.8 39,721 - -1.0 39,721 - -0.4 39,721 - -0.9 39,721 - +1.1 39,721 - +0.3 39,721 - -0.0 39,721 - +0.5 39,721 - +0.4 39,742 - +0.1 39,742 - -0.1 39,831 - -0.9 39,891 + +0.4 39,892 - -0.6 39,892 - -0.3 39,892 - -0.3 39,896 - +0.4 40,069 - EX31_RS21485 0.25 -0.6 40,071 - EX31_RS21485 0.25 -1.3 40,071 - EX31_RS21485 0.25 +0.1 40,071 - EX31_RS21485 0.25 +0.0 40,071 - EX31_RS21485 0.25 +0.4 40,071 - EX31_RS21485 0.25 -0.5 40,071 - EX31_RS21485 0.25 +0.6 40,071 - EX31_RS21485 0.25 +0.5 40,071 - EX31_RS21485 0.25 -0.5 40,071 - EX31_RS21485 0.25 +0.3 40,071 - EX31_RS21485 0.25 -0.9 40,083 - EX31_RS21485 0.29 -0.1 40,094 - EX31_RS21485 0.32 -0.1 40,094 - EX31_RS21485 0.32 +0.2 40,094 - EX31_RS21485 0.32 -0.7 40,135 - EX31_RS21485 0.45 -0.0 40,135 - EX31_RS21485 0.45 +0.1 40,135 - EX31_RS21485 0.45 +0.2 40,135 - EX31_RS21485 0.45 -0.4 40,135 - EX31_RS21485 0.45 -0.0 40,135 - EX31_RS21485 0.45 -0.1 40,135 - EX31_RS21485 0.45 +0.3 40,135 - EX31_RS21485 0.45 -0.6 40,135 - EX31_RS21485 0.45 +0.0 40,135 - EX31_RS21485 0.45 -0.0 40,135 - EX31_RS21485 0.45 +0.2 40,135 - EX31_RS21485 0.45 -0.6 40,182 - EX31_RS21485 0.59 -0.4 40,182 - EX31_RS21485 0.59 -0.4 40,295 + -1.3 40,295 + +0.5 40,296 - +0.0 40,336 - -0.3 40,361 - -0.0 40,361 - -0.3 40,396 + -0.2 40,396 + -0.0 40,396 + +0.5 40,397 - +0.0 40,397 - -0.9 40,397 - -0.6 40,397 - -0.5 40,397 - -0.3 40,397 - +0.1 40,397 - +0.5 40,397 - +1.3 40,398 + +0.7 40,398 + -0.5 40,398 + -0.6 40,398 + -1.5 40,398 + -2.4 40,398 + -0.3 40,398 + -0.2 40,398 + -0.2 40,398 + -0.4 40,398 + +0.7 40,398 + -0.4 40,398 + -0.1 40,398 + -0.1 40,398 + +0.3 40,398 + +0.4 40,398 + -2.1 40,398 + -0.2 40,398 + -0.1 40,398 + -0.6 40,399 - -0.3 40,399 - +0.7 40,399 - +0.3 40,399 - -0.9 40,399 - -0.4 40,399 - -0.4 40,399 - +0.1 40,399 - -0.8 40,399 - -0.1 40,399 - -0.2 40,399 - +1.3 40,399 - +0.1 40,399 - +0.3 40,399 - +0.4 40,399 - +0.1 40,399 - -1.4 40,399 - +0.1 40,399 - -0.3 40,399 - -0.1 40,399 - -0.4 40,399 - -1.6 40,399 - -0.0 40,399 - +1.3 40,399 - -0.1 40,399 - +0.4 40,399 - +0.2 40,399 - -0.2 40,399 - -0.2 40,399 - +0.3 40,399 - -0.4 40,402 + -0.4 40,402 + -0.5 40,402 + -0.7 40,402 + -0.2 40,402 + -1.1 40,402 + -1.2 40,402 + -0.4 40,402 + -0.3 40,402 + -0.1 40,402 + +0.0 40,402 + -1.6 40,403 - +0.4 40,403 - -1.7 40,403 - -0.3 40,403 - +0.6 40,403 - -0.2 40,403 - -0.3 40,403 - -0.4 40,403 - +0.6 40,403 - +2.1 40,411 - +0.7 40,418 + +0.3 40,418 + +0.4 40,418 + -0.6 40,419 - +0.3 40,419 - -1.6 40,419 - -0.8 40,475 + +0.6 40,500 - +0.3 40,507 + +0.2 40,507 + -0.7 40,508 - -0.3 40,510 + -0.4 40,510 + +0.4 40,510 + -0.3 40,510 + +0.5 40,510 + -0.6 40,511 - -0.2 40,511 - +0.9 40,533 + +0.0 40,533 + +0.4 40,533 + -0.1 40,533 + +0.4 40,534 - +0.3 40,534 - +0.3 40,534 - +0.4 40,544 + -0.6 40,544 + +0.1 40,544 + -0.1 40,575 + +0.0 40,575 + +1.1 40,575 + +1.1 40,575 + -0.8 40,575 + +0.6 40,575 + +1.1 40,575 + +0.0 40,576 - +1.3 40,576 - -0.7 40,576 - +1.0 40,576 - +0.3 40,576 - -0.1 40,578 - -0.1 40,584 + +0.3 40,584 + -0.4 40,584 + +0.2 40,584 + -0.8 40,584 + -0.3 40,584 + +1.0 40,584 + -0.8 40,585 - -0.0 40,585 - +0.3 40,585 - +1.1 40,588 + +0.1 40,588 + +0.8 40,589 - +0.3 40,593 + +0.4 40,593 + -0.1 40,593 + +0.5 40,593 + -0.1 40,593 + +0.6 40,593 + -0.4 40,593 + -0.9 40,594 - -0.2 40,594 - +0.1 40,594 - +0.7 40,597 + -1.4 40,597 + +0.1 40,597 + +0.5 40,598 - -0.9 40,598 - -1.2
Or see this region's nucleotide sequence