Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19305 and EX31_RS19310 are separated by 72 nucleotides EX31_RS19310 and EX31_RS19315 are separated by 0 nucleotides EX31_RS19315 and EX31_RS19320 are separated by 139 nucleotides
EX31_RS19305: EX31_RS19305 - ribonucleoside-diphosphate reductase subunit alpha, at 485,193 to 487,475
_RS19305
EX31_RS19310: EX31_RS19310 - ribonucleotide-diphosphate reductase subunit beta, at 487,548 to 488,678
_RS19310
EX31_RS19315: EX31_RS19315 - 2Fe-2S ferredoxin-like protein, at 488,679 to 488,939
_RS19315
EX31_RS19320: EX31_RS19320 - nicotinamide mononucleotide deamidase-related protein YfaY, at 489,079 to 490,284
_RS19320
Position (kb) 487
488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 486.578 kb on + strand, within EX31_RS19305 at 486.578 kb on + strand, within EX31_RS19305 at 486.578 kb on + strand, within EX31_RS19305 at 486.578 kb on + strand, within EX31_RS19305 at 486.578 kb on + strand, within EX31_RS19305 at 486.578 kb on + strand, within EX31_RS19305 at 486.725 kb on + strand, within EX31_RS19305 at 486.725 kb on + strand, within EX31_RS19305 at 486.725 kb on + strand, within EX31_RS19305 at 486.725 kb on + strand, within EX31_RS19305 at 486.726 kb on - strand, within EX31_RS19305 at 486.746 kb on + strand, within EX31_RS19305 at 486.746 kb on + strand, within EX31_RS19305 at 486.746 kb on + strand, within EX31_RS19305 at 486.750 kb on + strand, within EX31_RS19305 at 486.750 kb on + strand, within EX31_RS19305 at 486.750 kb on + strand, within EX31_RS19305 at 486.750 kb on + strand, within EX31_RS19305 at 486.756 kb on + strand, within EX31_RS19305 at 486.756 kb on + strand, within EX31_RS19305 at 486.756 kb on + strand, within EX31_RS19305 at 486.759 kb on + strand, within EX31_RS19305 at 486.759 kb on + strand, within EX31_RS19305 at 486.759 kb on + strand, within EX31_RS19305 at 486.837 kb on + strand, within EX31_RS19305 at 486.837 kb on + strand, within EX31_RS19305 at 486.837 kb on + strand, within EX31_RS19305 at 486.837 kb on + strand, within EX31_RS19305 at 486.837 kb on + strand, within EX31_RS19305 at 486.840 kb on + strand, within EX31_RS19305 at 486.840 kb on + strand, within EX31_RS19305 at 486.909 kb on + strand, within EX31_RS19305 at 486.909 kb on + strand, within EX31_RS19305 at 486.935 kb on + strand, within EX31_RS19305 at 486.939 kb on + strand, within EX31_RS19305 at 486.939 kb on + strand, within EX31_RS19305 at 486.939 kb on + strand, within EX31_RS19305 at 486.939 kb on + strand, within EX31_RS19305 at 486.939 kb on + strand, within EX31_RS19305 at 486.939 kb on + strand, within EX31_RS19305 at 486.959 kb on + strand, within EX31_RS19305 at 486.959 kb on + strand, within EX31_RS19305 at 486.959 kb on + strand, within EX31_RS19305 at 487.017 kb on + strand, within EX31_RS19305 at 487.017 kb on + strand, within EX31_RS19305 at 487.017 kb on + strand, within EX31_RS19305 at 487.028 kb on + strand, within EX31_RS19305 at 487.028 kb on + strand, within EX31_RS19305 at 487.167 kb on + strand, within EX31_RS19305 at 487.224 kb on + strand, within EX31_RS19305 at 487.243 kb on + strand, within EX31_RS19305 at 487.287 kb on + strand at 487.287 kb on + strand at 487.287 kb on + strand at 487.380 kb on + strand at 487.380 kb on + strand at 487.380 kb on + strand at 487.380 kb on + strand at 487.383 kb on + strand at 487.383 kb on + strand at 487.383 kb on + strand at 487.383 kb on + strand at 487.383 kb on + strand at 487.383 kb on + strand at 487.414 kb on + strand at 487.414 kb on + strand at 487.554 kb on + strand at 487.555 kb on - strand at 487.898 kb on + strand, within EX31_RS19310 at 487.914 kb on + strand, within EX31_RS19310 at 487.922 kb on + strand, within EX31_RS19310 at 487.922 kb on + strand, within EX31_RS19310 at 487.922 kb on + strand, within EX31_RS19310 at 487.922 kb on + strand, within EX31_RS19310 at 487.922 kb on + strand, within EX31_RS19310 at 487.922 kb on + strand, within EX31_RS19310 at 487.923 kb on - strand, within EX31_RS19310 at 487.925 kb on + strand, within EX31_RS19310 at 487.931 kb on + strand, within EX31_RS19310 at 488.019 kb on + strand, within EX31_RS19310 at 488.019 kb on + strand, within EX31_RS19310 at 488.046 kb on + strand, within EX31_RS19310 at 488.046 kb on + strand, within EX31_RS19310 at 488.046 kb on + strand, within EX31_RS19310 at 488.047 kb on - strand, within EX31_RS19310 at 488.049 kb on + strand, within EX31_RS19310 at 488.049 kb on + strand, within EX31_RS19310 at 488.050 kb on - strand, within EX31_RS19310 at 488.098 kb on + strand, within EX31_RS19310 at 488.098 kb on + strand, within EX31_RS19310 at 488.098 kb on + strand, within EX31_RS19310 at 488.098 kb on + strand, within EX31_RS19310 at 488.098 kb on + strand, within EX31_RS19310 at 488.098 kb on + strand, within EX31_RS19310 at 488.102 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.167 kb on + strand, within EX31_RS19310 at 488.175 kb on + strand, within EX31_RS19310 at 488.176 kb on - strand, within EX31_RS19310 at 488.415 kb on + strand, within EX31_RS19310 at 488.415 kb on + strand, within EX31_RS19310 at 488.469 kb on + strand, within EX31_RS19310 at 488.469 kb on + strand, within EX31_RS19310 at 488.469 kb on + strand, within EX31_RS19310 at 488.469 kb on + strand, within EX31_RS19310 at 488.478 kb on + strand, within EX31_RS19310 at 488.478 kb on + strand, within EX31_RS19310 at 488.478 kb on + strand, within EX31_RS19310 at 488.478 kb on + strand, within EX31_RS19310 at 488.479 kb on - strand, within EX31_RS19310 at 488.479 kb on - strand, within EX31_RS19310 at 488.496 kb on - strand, within EX31_RS19310 at 488.616 kb on + strand at 488.617 kb on - strand at 488.623 kb on + strand at 488.676 kb on + strand at 488.676 kb on + strand at 488.729 kb on + strand, within EX31_RS19315 at 488.729 kb on + strand, within EX31_RS19315 at 488.730 kb on - strand, within EX31_RS19315 at 488.787 kb on + strand, within EX31_RS19315 at 488.873 kb on + strand, within EX31_RS19315 at 488.893 kb on + strand, within EX31_RS19315 at 488.893 kb on + strand, within EX31_RS19315 at 489.080 kb on + strand at 489.081 kb on - strand at 489.081 kb on - strand at 489.154 kb on - strand at 489.187 kb on + strand at 489.187 kb on + strand at 489.188 kb on - strand at 489.188 kb on - strand at 489.265 kb on + strand, within EX31_RS19320 at 489.266 kb on - strand, within EX31_RS19320 at 489.481 kb on + strand, within EX31_RS19320 at 489.482 kb on - strand, within EX31_RS19320 at 489.482 kb on - strand, within EX31_RS19320 at 489.482 kb on - strand, within EX31_RS19320 at 489.482 kb on - strand, within EX31_RS19320
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 486,578 + EX31_RS19305 0.61 -0.2 486,578 + EX31_RS19305 0.61 -1.6 486,578 + EX31_RS19305 0.61 +0.2 486,578 + EX31_RS19305 0.61 -0.1 486,578 + EX31_RS19305 0.61 -0.5 486,578 + EX31_RS19305 0.61 -0.0 486,725 + EX31_RS19305 0.67 -1.6 486,725 + EX31_RS19305 0.67 +0.5 486,725 + EX31_RS19305 0.67 -0.4 486,725 + EX31_RS19305 0.67 -0.8 486,726 - EX31_RS19305 0.67 +0.5 486,746 + EX31_RS19305 0.68 -0.4 486,746 + EX31_RS19305 0.68 +0.2 486,746 + EX31_RS19305 0.68 -0.7 486,750 + EX31_RS19305 0.68 -1.1 486,750 + EX31_RS19305 0.68 -1.8 486,750 + EX31_RS19305 0.68 -0.5 486,750 + EX31_RS19305 0.68 -0.2 486,756 + EX31_RS19305 0.68 +0.2 486,756 + EX31_RS19305 0.68 -0.3 486,756 + EX31_RS19305 0.68 -1.8 486,759 + EX31_RS19305 0.69 -1.4 486,759 + EX31_RS19305 0.69 -1.5 486,759 + EX31_RS19305 0.69 -0.2 486,837 + EX31_RS19305 0.72 +0.4 486,837 + EX31_RS19305 0.72 +0.2 486,837 + EX31_RS19305 0.72 -0.8 486,837 + EX31_RS19305 0.72 -1.0 486,837 + EX31_RS19305 0.72 -0.7 486,840 + EX31_RS19305 0.72 -0.1 486,840 + EX31_RS19305 0.72 +0.0 486,909 + EX31_RS19305 0.75 -0.1 486,909 + EX31_RS19305 0.75 -0.5 486,935 + EX31_RS19305 0.76 +0.8 486,939 + EX31_RS19305 0.76 +0.2 486,939 + EX31_RS19305 0.76 -0.5 486,939 + EX31_RS19305 0.76 -1.7 486,939 + EX31_RS19305 0.76 -1.7 486,939 + EX31_RS19305 0.76 -0.7 486,939 + EX31_RS19305 0.76 -0.6 486,959 + EX31_RS19305 0.77 -0.1 486,959 + EX31_RS19305 0.77 -0.2 486,959 + EX31_RS19305 0.77 +0.3 487,017 + EX31_RS19305 0.80 +0.1 487,017 + EX31_RS19305 0.80 -1.1 487,017 + EX31_RS19305 0.80 +0.6 487,028 + EX31_RS19305 0.80 -0.4 487,028 + EX31_RS19305 0.80 -1.4 487,167 + EX31_RS19305 0.86 -0.6 487,224 + EX31_RS19305 0.89 +0.1 487,243 + EX31_RS19305 0.90 -0.5 487,287 + -0.8 487,287 + -0.3 487,287 + +0.3 487,380 + -0.5 487,380 + -0.8 487,380 + -1.1 487,380 + +0.4 487,383 + +0.8 487,383 + -0.0 487,383 + -0.1 487,383 + -0.3 487,383 + -0.1 487,383 + +0.4 487,414 + +0.3 487,414 + +0.2 487,554 + -0.9 487,555 - +0.2 487,898 + EX31_RS19310 0.31 +0.2 487,914 + EX31_RS19310 0.32 -0.4 487,922 + EX31_RS19310 0.33 -0.4 487,922 + EX31_RS19310 0.33 -0.6 487,922 + EX31_RS19310 0.33 -1.2 487,922 + EX31_RS19310 0.33 -0.0 487,922 + EX31_RS19310 0.33 -0.6 487,922 + EX31_RS19310 0.33 +0.6 487,923 - EX31_RS19310 0.33 -0.8 487,925 + EX31_RS19310 0.33 +0.3 487,931 + EX31_RS19310 0.34 -0.8 488,019 + EX31_RS19310 0.42 -0.3 488,019 + EX31_RS19310 0.42 -0.4 488,046 + EX31_RS19310 0.44 -0.2 488,046 + EX31_RS19310 0.44 +1.0 488,046 + EX31_RS19310 0.44 -0.4 488,047 - EX31_RS19310 0.44 -0.1 488,049 + EX31_RS19310 0.44 -0.5 488,049 + EX31_RS19310 0.44 -0.3 488,050 - EX31_RS19310 0.44 -0.9 488,098 + EX31_RS19310 0.49 -0.1 488,098 + EX31_RS19310 0.49 -2.8 488,098 + EX31_RS19310 0.49 -1.4 488,098 + EX31_RS19310 0.49 -1.3 488,098 + EX31_RS19310 0.49 -0.2 488,098 + EX31_RS19310 0.49 -1.5 488,102 + EX31_RS19310 0.49 -0.8 488,117 + EX31_RS19310 0.50 +0.5 488,117 + EX31_RS19310 0.50 -1.1 488,117 + EX31_RS19310 0.50 -0.3 488,117 + EX31_RS19310 0.50 -0.9 488,117 + EX31_RS19310 0.50 -0.7 488,117 + EX31_RS19310 0.50 -1.7 488,117 + EX31_RS19310 0.50 -0.2 488,117 + EX31_RS19310 0.50 -0.4 488,117 + EX31_RS19310 0.50 -0.7 488,130 + EX31_RS19310 0.51 -1.6 488,130 + EX31_RS19310 0.51 -0.3 488,130 + EX31_RS19310 0.51 -0.0 488,130 + EX31_RS19310 0.51 -0.4 488,130 + EX31_RS19310 0.51 -1.8 488,130 + EX31_RS19310 0.51 -0.2 488,130 + EX31_RS19310 0.51 +0.6 488,167 + EX31_RS19310 0.55 -0.5 488,175 + EX31_RS19310 0.55 -0.3 488,176 - EX31_RS19310 0.56 -2.6 488,415 + EX31_RS19310 0.77 -1.0 488,415 + EX31_RS19310 0.77 +0.2 488,469 + EX31_RS19310 0.81 -0.5 488,469 + EX31_RS19310 0.81 +0.4 488,469 + EX31_RS19310 0.81 -1.7 488,469 + EX31_RS19310 0.81 +0.5 488,478 + EX31_RS19310 0.82 -0.6 488,478 + EX31_RS19310 0.82 -0.4 488,478 + EX31_RS19310 0.82 +0.5 488,478 + EX31_RS19310 0.82 +0.0 488,479 - EX31_RS19310 0.82 -0.9 488,479 - EX31_RS19310 0.82 -1.6 488,496 - EX31_RS19310 0.84 -0.4 488,616 + -0.6 488,617 - -0.3 488,623 + -0.3 488,676 + +0.3 488,676 + +1.8 488,729 + EX31_RS19315 0.19 -0.0 488,729 + EX31_RS19315 0.19 +0.1 488,730 - EX31_RS19315 0.20 +0.5 488,787 + EX31_RS19315 0.41 -0.5 488,873 + EX31_RS19315 0.74 +1.7 488,893 + EX31_RS19315 0.82 -0.8 488,893 + EX31_RS19315 0.82 +0.1 489,080 + +1.0 489,081 - -0.0 489,081 - -1.7 489,154 - -0.1 489,187 + +1.0 489,187 + +0.1 489,188 - -0.1 489,188 - +1.2 489,265 + EX31_RS19320 0.15 +1.2 489,266 - EX31_RS19320 0.16 +0.1 489,481 + EX31_RS19320 0.33 +0.2 489,482 - EX31_RS19320 0.33 +1.0 489,482 - EX31_RS19320 0.33 -0.3 489,482 - EX31_RS19320 0.33 -0.2 489,482 - EX31_RS19320 0.33 -0.6
Or see this region's nucleotide sequence