Strain Fitness in Rahnella sp. WP5 around EX31_RS17710

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17705 and EX31_RS17710 are separated by 26 nucleotidesEX31_RS17710 and EX31_RS17715 are separated by 140 nucleotides EX31_RS17705: EX31_RS17705 - efflux RND transporter periplasmic adaptor subunit, at 94,149 to 95,291 _RS17705 EX31_RS17710: EX31_RS17710 - hypothetical protein, at 95,318 to 95,482 _RS17710 EX31_RS17715: EX31_RS17715 - MipA/OmpV family protein, at 95,623 to 96,408 _RS17715 Position (kb) 95 96Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 94.397 kb on + strand, within EX31_RS17705at 94.398 kb on - strand, within EX31_RS17705at 94.454 kb on + strand, within EX31_RS17705at 94.545 kb on + strand, within EX31_RS17705at 94.546 kb on - strand, within EX31_RS17705at 94.551 kb on + strand, within EX31_RS17705at 94.552 kb on - strand, within EX31_RS17705at 94.553 kb on + strand, within EX31_RS17705at 94.553 kb on + strand, within EX31_RS17705at 94.553 kb on + strand, within EX31_RS17705at 94.553 kb on + strand, within EX31_RS17705at 94.553 kb on + strand, within EX31_RS17705at 94.554 kb on - strand, within EX31_RS17705at 94.554 kb on - strand, within EX31_RS17705at 94.554 kb on - strand, within EX31_RS17705at 94.554 kb on - strand, within EX31_RS17705at 94.554 kb on - strand, within EX31_RS17705at 94.554 kb on - strand, within EX31_RS17705at 94.556 kb on + strand, within EX31_RS17705at 94.556 kb on + strand, within EX31_RS17705at 94.556 kb on + strand, within EX31_RS17705at 94.854 kb on + strand, within EX31_RS17705at 94.855 kb on - strand, within EX31_RS17705at 94.855 kb on - strand, within EX31_RS17705at 94.855 kb on - strand, within EX31_RS17705at 94.863 kb on - strand, within EX31_RS17705at 94.863 kb on - strand, within EX31_RS17705at 94.965 kb on - strand, within EX31_RS17705at 95.068 kb on - strand, within EX31_RS17705at 95.068 kb on - strand, within EX31_RS17705at 95.282 kb on + strandat 95.283 kb on - strandat 95.283 kb on - strandat 95.320 kb on - strandat 95.352 kb on + strand, within EX31_RS17710at 95.353 kb on - strand, within EX31_RS17710at 95.432 kb on + strand, within EX31_RS17710at 95.432 kb on + strand, within EX31_RS17710at 95.433 kb on - strand, within EX31_RS17710at 95.433 kb on - strand, within EX31_RS17710at 95.433 kb on - strand, within EX31_RS17710at 95.474 kb on - strandat 95.540 kb on - strandat 95.558 kb on + strandat 95.558 kb on + strandat 95.559 kb on - strandat 95.559 kb on - strandat 95.604 kb on + strandat 95.605 kb on - strandat 95.605 kb on - strandat 95.639 kb on + strandat 95.640 kb on - strandat 95.755 kb on + strand, within EX31_RS17715at 95.876 kb on - strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.897 kb on - strand, within EX31_RS17715at 96.095 kb on + strand, within EX31_RS17715at 96.163 kb on + strand, within EX31_RS17715at 96.163 kb on + strand, within EX31_RS17715at 96.164 kb on - strand, within EX31_RS17715at 96.165 kb on + strand, within EX31_RS17715at 96.165 kb on + strand, within EX31_RS17715at 96.165 kb on + strand, within EX31_RS17715at 96.165 kb on + strand, within EX31_RS17715at 96.165 kb on + strand, within EX31_RS17715at 96.165 kb on + strand, within EX31_RS17715at 96.166 kb on - strand, within EX31_RS17715at 96.166 kb on - strand, within EX31_RS17715at 96.166 kb on - strand, within EX31_RS17715at 96.171 kb on + strand, within EX31_RS17715at 96.172 kb on - strand, within EX31_RS17715at 96.178 kb on + strand, within EX31_RS17715at 96.178 kb on + strand, within EX31_RS17715at 96.178 kb on + strand, within EX31_RS17715at 96.179 kb on - strand, within EX31_RS17715at 96.179 kb on - strand, within EX31_RS17715at 96.179 kb on - strand, within EX31_RS17715at 96.224 kb on - strand, within EX31_RS17715at 96.316 kb on + strand, within EX31_RS17715at 96.316 kb on + strand, within EX31_RS17715at 96.380 kb on - strandat 96.397 kb on + strandat 96.398 kb on - strandat 96.398 kb on - strandat 96.398 kb on - strandat 96.398 kb on - strandat 96.399 kb on + strandat 96.400 kb on - strandat 96.400 kb on - strandat 96.400 kb on - strandat 96.400 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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94,397 + EX31_RS17705 0.22 +0.4
94,398 - EX31_RS17705 0.22 -1.2
94,454 + EX31_RS17705 0.27 +0.9
94,545 + EX31_RS17705 0.35 -0.9
94,546 - EX31_RS17705 0.35 -1.5
94,551 + EX31_RS17705 0.35 +0.7
94,552 - EX31_RS17705 0.35 +0.7
94,553 + EX31_RS17705 0.35 +0.1
94,553 + EX31_RS17705 0.35 -0.3
94,553 + EX31_RS17705 0.35 -1.6
94,553 + EX31_RS17705 0.35 -1.0
94,553 + EX31_RS17705 0.35 -2.8
94,554 - EX31_RS17705 0.35 -0.4
94,554 - EX31_RS17705 0.35 +0.2
94,554 - EX31_RS17705 0.35 +1.8
94,554 - EX31_RS17705 0.35 -0.0
94,554 - EX31_RS17705 0.35 +1.0
94,554 - EX31_RS17705 0.35 +0.3
94,556 + EX31_RS17705 0.36 +0.4
94,556 + EX31_RS17705 0.36 +0.4
94,556 + EX31_RS17705 0.36 -1.8
94,854 + EX31_RS17705 0.62 -0.8
94,855 - EX31_RS17705 0.62 +0.7
94,855 - EX31_RS17705 0.62 +0.2
94,855 - EX31_RS17705 0.62 -0.0
94,863 - EX31_RS17705 0.62 +0.4
94,863 - EX31_RS17705 0.62 +0.0
94,965 - EX31_RS17705 0.71 +0.6
95,068 - EX31_RS17705 0.80 -0.5
95,068 - EX31_RS17705 0.80 +0.4
95,282 + +0.3
95,283 - +1.2
95,283 - -0.1
95,320 - -1.6
95,352 + EX31_RS17710 0.21 -2.8
95,353 - EX31_RS17710 0.21 -0.6
95,432 + EX31_RS17710 0.69 -1.0
95,432 + EX31_RS17710 0.69 -1.6
95,433 - EX31_RS17710 0.70 -0.4
95,433 - EX31_RS17710 0.70 -0.2
95,433 - EX31_RS17710 0.70 -0.7
95,474 - -0.5
95,540 - +0.6
95,558 + -0.7
95,558 + -0.2
95,559 - +0.5
95,559 - -0.3
95,604 + -0.1
95,605 - +0.6
95,605 - +0.5
95,639 + -0.7
95,640 - +0.8
95,755 + EX31_RS17715 0.17 +1.4
95,876 - EX31_RS17715 0.32 +0.9
95,886 + EX31_RS17715 0.33 +0.4
95,886 + EX31_RS17715 0.33 +0.8
95,886 + EX31_RS17715 0.33 -0.2
95,886 + EX31_RS17715 0.33 +0.9
95,886 + EX31_RS17715 0.33 +0.2
95,886 + EX31_RS17715 0.33 -1.8
95,886 + EX31_RS17715 0.33 +0.1
95,886 + EX31_RS17715 0.33 +0.1
95,886 + EX31_RS17715 0.33 -1.6
95,887 - EX31_RS17715 0.34 +0.6
95,887 - EX31_RS17715 0.34 +0.0
95,887 - EX31_RS17715 0.34 -0.9
95,887 - EX31_RS17715 0.34 -0.5
95,887 - EX31_RS17715 0.34 -0.4
95,887 - EX31_RS17715 0.34 +0.3
95,887 - EX31_RS17715 0.34 +0.2
95,897 - EX31_RS17715 0.35 -1.9
96,095 + EX31_RS17715 0.60 +0.8
96,163 + EX31_RS17715 0.69 -0.1
96,163 + EX31_RS17715 0.69 -1.4
96,164 - EX31_RS17715 0.69 +0.8
96,165 + EX31_RS17715 0.69 +0.3
96,165 + EX31_RS17715 0.69 -0.6
96,165 + EX31_RS17715 0.69 -0.2
96,165 + EX31_RS17715 0.69 -0.9
96,165 + EX31_RS17715 0.69 +0.3
96,165 + EX31_RS17715 0.69 +0.2
96,166 - EX31_RS17715 0.69 -0.3
96,166 - EX31_RS17715 0.69 -0.3
96,166 - EX31_RS17715 0.69 -0.8
96,171 + EX31_RS17715 0.70 -1.6
96,172 - EX31_RS17715 0.70 -0.6
96,178 + EX31_RS17715 0.71 +0.8
96,178 + EX31_RS17715 0.71 +1.1
96,178 + EX31_RS17715 0.71 -1.2
96,179 - EX31_RS17715 0.71 -0.7
96,179 - EX31_RS17715 0.71 -0.0
96,179 - EX31_RS17715 0.71 -0.3
96,224 - EX31_RS17715 0.76 +0.1
96,316 + EX31_RS17715 0.88 +0.5
96,316 + EX31_RS17715 0.88 -2.6
96,380 - +0.8
96,397 + -2.6
96,398 - -0.2
96,398 - -1.6
96,398 - -1.3
96,398 - -0.4
96,399 + +0.6
96,400 - -0.1
96,400 - -0.1
96,400 - +0.6
96,400 - +0.0

Or see this region's nucleotide sequence