Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15020 and EX31_RS15025 are separated by 89 nucleotides EX31_RS15025 and EX31_RS15030 are separated by 175 nucleotides
EX31_RS15020: EX31_RS15020 - ketol-acid reductoisomerase, at 17,932 to 19,407
_RS15020
EX31_RS15025: EX31_RS15025 - peptidylprolyl isomerase PpiC, at 19,497 to 19,778
_RS15025
EX31_RS15030: EX31_RS15030 - DNA helicase Rep, at 19,954 to 21,978
_RS15030
Position (kb) 19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.601 kb on - strand, within EX31_RS15020 at 18.601 kb on - strand, within EX31_RS15020 at 18.676 kb on + strand, within EX31_RS15020 at 18.677 kb on - strand, within EX31_RS15020 at 18.677 kb on - strand, within EX31_RS15020 at 18.766 kb on - strand, within EX31_RS15020 at 18.787 kb on + strand, within EX31_RS15020 at 18.787 kb on + strand, within EX31_RS15020 at 18.788 kb on - strand, within EX31_RS15020 at 18.904 kb on - strand, within EX31_RS15020 at 18.972 kb on + strand, within EX31_RS15020 at 18.972 kb on + strand, within EX31_RS15020 at 18.972 kb on + strand, within EX31_RS15020 at 18.972 kb on + strand, within EX31_RS15020 at 18.973 kb on - strand, within EX31_RS15020 at 18.991 kb on + strand, within EX31_RS15020 at 18.991 kb on + strand, within EX31_RS15020 at 18.991 kb on + strand, within EX31_RS15020 at 18.992 kb on - strand, within EX31_RS15020 at 18.992 kb on - strand, within EX31_RS15020 at 19.061 kb on + strand, within EX31_RS15020 at 19.061 kb on + strand, within EX31_RS15020 at 19.061 kb on + strand, within EX31_RS15020 at 19.061 kb on + strand, within EX31_RS15020 at 19.061 kb on + strand, within EX31_RS15020 at 19.061 kb on + strand, within EX31_RS15020 at 19.061 kb on + strand, within EX31_RS15020 at 19.062 kb on - strand, within EX31_RS15020 at 19.062 kb on - strand, within EX31_RS15020 at 19.062 kb on - strand, within EX31_RS15020 at 19.090 kb on + strand, within EX31_RS15020 at 19.090 kb on + strand, within EX31_RS15020 at 19.091 kb on - strand, within EX31_RS15020 at 19.091 kb on - strand, within EX31_RS15020 at 19.093 kb on + strand, within EX31_RS15020 at 19.093 kb on + strand, within EX31_RS15020 at 19.093 kb on + strand, within EX31_RS15020 at 19.094 kb on - strand, within EX31_RS15020 at 19.094 kb on - strand, within EX31_RS15020 at 19.094 kb on - strand, within EX31_RS15020 at 19.094 kb on - strand, within EX31_RS15020 at 19.094 kb on - strand, within EX31_RS15020 at 19.094 kb on - strand, within EX31_RS15020 at 19.140 kb on + strand, within EX31_RS15020 at 19.140 kb on + strand, within EX31_RS15020 at 19.140 kb on + strand, within EX31_RS15020 at 19.140 kb on + strand, within EX31_RS15020 at 19.140 kb on + strand, within EX31_RS15020 at 19.141 kb on - strand, within EX31_RS15020 at 19.167 kb on - strand, within EX31_RS15020 at 19.191 kb on + strand, within EX31_RS15020 at 19.191 kb on + strand, within EX31_RS15020 at 19.191 kb on + strand, within EX31_RS15020 at 19.192 kb on - strand, within EX31_RS15020 at 19.192 kb on - strand, within EX31_RS15020 at 19.195 kb on + strand, within EX31_RS15020 at 19.195 kb on + strand, within EX31_RS15020 at 19.195 kb on + strand, within EX31_RS15020 at 19.195 kb on + strand, within EX31_RS15020 at 19.195 kb on + strand, within EX31_RS15020 at 19.195 kb on + strand, within EX31_RS15020 at 19.195 kb on + strand, within EX31_RS15020 at 19.195 kb on + strand, within EX31_RS15020 at 19.196 kb on - strand, within EX31_RS15020 at 19.196 kb on - strand, within EX31_RS15020 at 19.196 kb on - strand, within EX31_RS15020 at 19.196 kb on - strand, within EX31_RS15020 at 19.196 kb on - strand, within EX31_RS15020 at 19.196 kb on - strand, within EX31_RS15020 at 19.196 kb on - strand, within EX31_RS15020 at 19.196 kb on - strand, within EX31_RS15020 at 19.196 kb on - strand, within EX31_RS15020 at 19.196 kb on - strand, within EX31_RS15020 at 19.196 kb on - strand, within EX31_RS15020 at 19.196 kb on - strand, within EX31_RS15020 at 19.369 kb on + strand at 19.369 kb on + strand at 19.369 kb on + strand at 19.369 kb on + strand at 19.369 kb on + strand at 19.369 kb on + strand at 19.370 kb on - strand at 19.370 kb on - strand at 19.370 kb on - strand at 19.370 kb on - strand at 19.370 kb on - strand at 19.370 kb on - strand at 19.370 kb on - strand at 19.370 kb on - strand at 19.371 kb on + strand at 19.371 kb on + strand at 19.371 kb on + strand at 19.372 kb on - strand at 19.372 kb on - strand at 19.372 kb on - strand at 19.372 kb on - strand at 19.405 kb on + strand at 19.406 kb on - strand at 19.406 kb on - strand at 19.424 kb on + strand at 19.431 kb on + strand at 19.437 kb on + strand at 19.437 kb on + strand at 19.438 kb on - strand at 19.498 kb on + strand at 19.498 kb on + strand at 19.498 kb on + strand at 19.498 kb on + strand at 19.498 kb on + strand at 19.498 kb on + strand at 19.498 kb on + strand at 19.499 kb on - strand at 19.499 kb on - strand at 19.499 kb on - strand at 19.507 kb on + strand at 19.518 kb on - strand at 19.518 kb on - strand at 19.589 kb on + strand, within EX31_RS15025 at 19.629 kb on + strand, within EX31_RS15025 at 19.630 kb on - strand, within EX31_RS15025 at 19.630 kb on - strand, within EX31_RS15025 at 19.630 kb on - strand, within EX31_RS15025 at 19.630 kb on - strand, within EX31_RS15025 at 19.630 kb on - strand, within EX31_RS15025 at 19.630 kb on - strand, within EX31_RS15025 at 19.674 kb on - strand, within EX31_RS15025 at 19.781 kb on + strand at 19.781 kb on + strand at 19.781 kb on + strand at 19.781 kb on + strand at 19.781 kb on + strand at 19.782 kb on - strand at 19.782 kb on - strand at 19.782 kb on - strand at 19.782 kb on - strand at 19.782 kb on - strand at 19.782 kb on - strand at 19.782 kb on - strand at 19.814 kb on + strand at 19.814 kb on + strand at 19.814 kb on + strand at 19.814 kb on + strand at 19.814 kb on + strand at 19.815 kb on - strand at 19.815 kb on - strand at 19.815 kb on - strand at 19.815 kb on - strand at 19.815 kb on - strand at 19.815 kb on - strand at 19.815 kb on - strand at 19.819 kb on + strand at 19.819 kb on + strand at 19.819 kb on + strand at 19.819 kb on + strand at 19.820 kb on - strand at 19.820 kb on - strand at 19.820 kb on - strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.861 kb on + strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.862 kb on - strand at 19.880 kb on + strand at 19.880 kb on + strand at 19.881 kb on - strand at 19.913 kb on - strand at 19.932 kb on - strand at 19.948 kb on + strand at 19.961 kb on + strand at 20.624 kb on - strand, within EX31_RS15030
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 18,601 - EX31_RS15020 0.45 +0.5 18,601 - EX31_RS15020 0.45 -0.3 18,676 + EX31_RS15020 0.50 +0.8 18,677 - EX31_RS15020 0.50 -0.2 18,677 - EX31_RS15020 0.50 -0.3 18,766 - EX31_RS15020 0.57 +0.3 18,787 + EX31_RS15020 0.58 +0.2 18,787 + EX31_RS15020 0.58 -0.3 18,788 - EX31_RS15020 0.58 +0.1 18,904 - EX31_RS15020 0.66 +0.4 18,972 + EX31_RS15020 0.70 -0.1 18,972 + EX31_RS15020 0.70 -1.1 18,972 + EX31_RS15020 0.70 -0.6 18,972 + EX31_RS15020 0.70 -0.1 18,973 - EX31_RS15020 0.71 -0.2 18,991 + EX31_RS15020 0.72 -0.2 18,991 + EX31_RS15020 0.72 +0.2 18,991 + EX31_RS15020 0.72 -0.2 18,992 - EX31_RS15020 0.72 +0.3 18,992 - EX31_RS15020 0.72 -1.0 19,061 + EX31_RS15020 0.76 -0.8 19,061 + EX31_RS15020 0.76 -0.5 19,061 + EX31_RS15020 0.76 -2.3 19,061 + EX31_RS15020 0.76 -0.2 19,061 + EX31_RS15020 0.76 -1.2 19,061 + EX31_RS15020 0.76 -0.3 19,061 + EX31_RS15020 0.76 -0.9 19,062 - EX31_RS15020 0.77 +0.2 19,062 - EX31_RS15020 0.77 -0.5 19,062 - EX31_RS15020 0.77 +0.3 19,090 + EX31_RS15020 0.78 -0.4 19,090 + EX31_RS15020 0.78 +0.1 19,091 - EX31_RS15020 0.79 +0.1 19,091 - EX31_RS15020 0.79 +0.5 19,093 + EX31_RS15020 0.79 -2.2 19,093 + EX31_RS15020 0.79 -0.1 19,093 + EX31_RS15020 0.79 -0.4 19,094 - EX31_RS15020 0.79 +0.0 19,094 - EX31_RS15020 0.79 -2.9 19,094 - EX31_RS15020 0.79 +0.3 19,094 - EX31_RS15020 0.79 -0.4 19,094 - EX31_RS15020 0.79 -0.5 19,094 - EX31_RS15020 0.79 +0.3 19,140 + EX31_RS15020 0.82 -0.0 19,140 + EX31_RS15020 0.82 -0.1 19,140 + EX31_RS15020 0.82 -0.7 19,140 + EX31_RS15020 0.82 -0.3 19,140 + EX31_RS15020 0.82 -0.6 19,141 - EX31_RS15020 0.82 +0.8 19,167 - EX31_RS15020 0.84 -1.4 19,191 + EX31_RS15020 0.85 -0.2 19,191 + EX31_RS15020 0.85 +0.2 19,191 + EX31_RS15020 0.85 -0.2 19,192 - EX31_RS15020 0.85 -1.1 19,192 - EX31_RS15020 0.85 +0.2 19,195 + EX31_RS15020 0.86 +0.2 19,195 + EX31_RS15020 0.86 +0.4 19,195 + EX31_RS15020 0.86 -1.1 19,195 + EX31_RS15020 0.86 -0.1 19,195 + EX31_RS15020 0.86 +0.3 19,195 + EX31_RS15020 0.86 -0.8 19,195 + EX31_RS15020 0.86 +0.3 19,195 + EX31_RS15020 0.86 +0.5 19,196 - EX31_RS15020 0.86 +0.3 19,196 - EX31_RS15020 0.86 -0.5 19,196 - EX31_RS15020 0.86 -1.2 19,196 - EX31_RS15020 0.86 -0.5 19,196 - EX31_RS15020 0.86 +0.4 19,196 - EX31_RS15020 0.86 -0.6 19,196 - EX31_RS15020 0.86 +0.1 19,196 - EX31_RS15020 0.86 +0.2 19,196 - EX31_RS15020 0.86 +0.4 19,196 - EX31_RS15020 0.86 +0.3 19,196 - EX31_RS15020 0.86 -0.2 19,196 - EX31_RS15020 0.86 +0.4 19,369 + -0.3 19,369 + +0.8 19,369 + -0.6 19,369 + -1.0 19,369 + +0.4 19,369 + -0.6 19,370 - -0.4 19,370 - +0.2 19,370 - +0.2 19,370 - -0.0 19,370 - +0.5 19,370 - +0.0 19,370 - +0.3 19,370 - -0.1 19,371 + +0.1 19,371 + +0.0 19,371 + -0.1 19,372 - +0.0 19,372 - +0.4 19,372 - -0.7 19,372 - +0.7 19,405 + +0.4 19,406 - +0.3 19,406 - -0.1 19,424 + +0.5 19,431 + +0.4 19,437 + -0.3 19,437 + -0.3 19,438 - -0.1 19,498 + -0.6 19,498 + -0.9 19,498 + -0.4 19,498 + -0.3 19,498 + +0.1 19,498 + -0.6 19,498 + +1.1 19,499 - +0.1 19,499 - -0.5 19,499 - +0.3 19,507 + +0.9 19,518 - -1.0 19,518 - +0.8 19,589 + EX31_RS15025 0.33 -0.6 19,629 + EX31_RS15025 0.47 -0.9 19,630 - EX31_RS15025 0.47 -0.1 19,630 - EX31_RS15025 0.47 -0.7 19,630 - EX31_RS15025 0.47 -0.3 19,630 - EX31_RS15025 0.47 +0.0 19,630 - EX31_RS15025 0.47 +0.0 19,630 - EX31_RS15025 0.47 -0.7 19,674 - EX31_RS15025 0.63 -1.4 19,781 + +0.7 19,781 + -0.4 19,781 + +0.0 19,781 + -0.6 19,781 + -0.6 19,782 - +0.1 19,782 - -0.4 19,782 - -0.2 19,782 - -0.2 19,782 - +0.6 19,782 - +0.5 19,782 - +0.3 19,814 + -0.3 19,814 + -0.2 19,814 + +0.0 19,814 + -0.4 19,814 + +0.4 19,815 - +0.0 19,815 - -0.3 19,815 - -1.3 19,815 - +0.6 19,815 - -0.8 19,815 - +0.5 19,815 - +0.2 19,819 + -1.4 19,819 + +0.2 19,819 + -0.6 19,819 + +0.1 19,820 - +0.4 19,820 - +0.3 19,820 - +0.1 19,861 + +0.4 19,861 + -0.7 19,861 + +0.2 19,861 + -1.4 19,861 + -1.1 19,861 + +0.2 19,861 + +0.3 19,861 + +0.2 19,861 + -0.2 19,861 + +0.1 19,861 + +0.1 19,861 + -0.2 19,861 + +0.5 19,861 + -0.1 19,861 + +0.4 19,861 + -0.5 19,861 + +1.0 19,861 + +0.3 19,861 + -0.5 19,862 - +0.8 19,862 - +0.5 19,862 - +0.3 19,862 - -1.1 19,862 - +1.8 19,862 - +0.1 19,862 - +0.2 19,862 - +0.3 19,862 - -0.2 19,862 - -0.2 19,862 - -0.3 19,862 - -0.1 19,862 - +0.8 19,862 - -0.2 19,862 - +1.9 19,862 - +0.1 19,862 - +1.0 19,862 - -0.2 19,862 - +0.4 19,862 - +0.1 19,862 - -1.3 19,862 - +0.3 19,862 - -0.3 19,880 + -0.3 19,880 + +0.7 19,881 - +0.7 19,913 - +1.3 19,932 - +0.1 19,948 + +0.9 19,961 + +0.2 20,624 - EX31_RS15030 0.33 +0.1
Or see this region's nucleotide sequence