Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12035 and EX31_RS12040 are separated by 121 nucleotides EX31_RS12040 and EX31_RS12045 are separated by 10 nucleotides EX31_RS12045 and EX31_RS12050 are separated by 116 nucleotides
EX31_RS12035: EX31_RS12035 - LysR family transcriptional regulator, at 72,593 to 73,495
_RS12035
EX31_RS12040: EX31_RS12040 - SDR family oxidoreductase, at 73,617 to 74,357
_RS12040
EX31_RS12045: EX31_RS12045 - tautomerase family protein, at 74,368 to 74,748
_RS12045
EX31_RS12050: EX31_RS12050 - DMT family transporter, at 74,865 to 75,770
_RS12050
Position (kb) 74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 73.384 kb on + strand, within EX31_RS12035 at 73.384 kb on + strand, within EX31_RS12035 at 73.384 kb on + strand, within EX31_RS12035 at 73.385 kb on - strand, within EX31_RS12035 at 73.385 kb on - strand, within EX31_RS12035 at 73.469 kb on + strand at 73.470 kb on - strand at 73.470 kb on - strand at 73.470 kb on - strand at 73.489 kb on + strand at 73.489 kb on + strand at 73.489 kb on + strand at 73.489 kb on + strand at 73.490 kb on - strand at 73.490 kb on - strand at 73.532 kb on + strand at 73.725 kb on + strand, within EX31_RS12040 at 73.726 kb on - strand, within EX31_RS12040 at 73.726 kb on - strand, within EX31_RS12040 at 73.726 kb on - strand, within EX31_RS12040 at 73.726 kb on - strand, within EX31_RS12040 at 73.726 kb on - strand, within EX31_RS12040 at 73.886 kb on + strand, within EX31_RS12040 at 73.887 kb on - strand, within EX31_RS12040 at 73.887 kb on - strand, within EX31_RS12040 at 73.895 kb on + strand, within EX31_RS12040 at 73.898 kb on + strand, within EX31_RS12040 at 73.898 kb on + strand, within EX31_RS12040 at 73.899 kb on - strand, within EX31_RS12040 at 73.899 kb on - strand, within EX31_RS12040 at 73.899 kb on - strand, within EX31_RS12040 at 73.899 kb on - strand, within EX31_RS12040 at 74.021 kb on + strand, within EX31_RS12040 at 74.021 kb on + strand, within EX31_RS12040 at 74.021 kb on + strand, within EX31_RS12040 at 74.021 kb on + strand, within EX31_RS12040 at 74.021 kb on + strand, within EX31_RS12040 at 74.021 kb on + strand, within EX31_RS12040 at 74.022 kb on - strand, within EX31_RS12040 at 74.022 kb on - strand, within EX31_RS12040 at 74.022 kb on - strand, within EX31_RS12040 at 74.022 kb on - strand, within EX31_RS12040 at 74.022 kb on - strand, within EX31_RS12040 at 74.022 kb on - strand, within EX31_RS12040 at 74.022 kb on - strand, within EX31_RS12040 at 74.022 kb on - strand, within EX31_RS12040 at 74.053 kb on + strand, within EX31_RS12040 at 74.053 kb on + strand, within EX31_RS12040 at 74.054 kb on - strand, within EX31_RS12040 at 74.055 kb on + strand, within EX31_RS12040 at 74.055 kb on + strand, within EX31_RS12040 at 74.055 kb on + strand, within EX31_RS12040 at 74.055 kb on + strand, within EX31_RS12040 at 74.055 kb on + strand, within EX31_RS12040 at 74.055 kb on + strand, within EX31_RS12040 at 74.056 kb on - strand, within EX31_RS12040 at 74.056 kb on - strand, within EX31_RS12040 at 74.056 kb on - strand, within EX31_RS12040 at 74.056 kb on - strand, within EX31_RS12040 at 74.056 kb on - strand, within EX31_RS12040 at 74.067 kb on + strand, within EX31_RS12040 at 74.068 kb on - strand, within EX31_RS12040 at 74.068 kb on - strand, within EX31_RS12040 at 74.068 kb on - strand, within EX31_RS12040 at 74.068 kb on - strand, within EX31_RS12040 at 74.068 kb on - strand, within EX31_RS12040 at 74.076 kb on + strand, within EX31_RS12040 at 74.077 kb on - strand, within EX31_RS12040 at 74.077 kb on - strand, within EX31_RS12040 at 74.077 kb on - strand, within EX31_RS12040 at 74.077 kb on - strand, within EX31_RS12040 at 74.146 kb on + strand, within EX31_RS12040 at 74.156 kb on + strand, within EX31_RS12040 at 74.156 kb on + strand, within EX31_RS12040 at 74.157 kb on - strand, within EX31_RS12040 at 74.157 kb on - strand, within EX31_RS12040 at 74.157 kb on - strand, within EX31_RS12040 at 74.188 kb on + strand, within EX31_RS12040 at 74.189 kb on - strand, within EX31_RS12040 at 74.189 kb on - strand, within EX31_RS12040 at 74.352 kb on - strand at 74.355 kb on + strand at 74.355 kb on + strand at 74.355 kb on + strand at 74.375 kb on + strand at 74.376 kb on - strand at 74.452 kb on + strand, within EX31_RS12045 at 74.452 kb on + strand, within EX31_RS12045 at 74.452 kb on + strand, within EX31_RS12045 at 74.453 kb on - strand, within EX31_RS12045 at 74.492 kb on + strand, within EX31_RS12045 at 74.492 kb on + strand, within EX31_RS12045 at 74.492 kb on + strand, within EX31_RS12045 at 74.492 kb on + strand, within EX31_RS12045 at 74.493 kb on - strand, within EX31_RS12045 at 74.493 kb on - strand, within EX31_RS12045 at 74.493 kb on - strand, within EX31_RS12045 at 74.517 kb on + strand, within EX31_RS12045 at 74.518 kb on - strand, within EX31_RS12045 at 74.518 kb on - strand, within EX31_RS12045 at 74.518 kb on - strand, within EX31_RS12045 at 74.536 kb on + strand, within EX31_RS12045 at 74.537 kb on - strand, within EX31_RS12045 at 74.579 kb on + strand, within EX31_RS12045 at 74.580 kb on - strand, within EX31_RS12045 at 74.580 kb on - strand, within EX31_RS12045 at 74.628 kb on + strand, within EX31_RS12045 at 74.629 kb on - strand, within EX31_RS12045 at 74.629 kb on - strand, within EX31_RS12045 at 74.652 kb on + strand, within EX31_RS12045 at 74.652 kb on + strand, within EX31_RS12045 at 74.652 kb on + strand, within EX31_RS12045 at 74.652 kb on + strand, within EX31_RS12045 at 74.652 kb on + strand, within EX31_RS12045 at 74.652 kb on + strand, within EX31_RS12045 at 74.653 kb on - strand, within EX31_RS12045 at 74.653 kb on - strand, within EX31_RS12045 at 74.653 kb on - strand, within EX31_RS12045 at 74.653 kb on - strand, within EX31_RS12045 at 74.653 kb on - strand, within EX31_RS12045 at 74.675 kb on + strand, within EX31_RS12045 at 74.675 kb on + strand, within EX31_RS12045 at 74.675 kb on + strand, within EX31_RS12045 at 74.675 kb on + strand, within EX31_RS12045 at 74.675 kb on + strand, within EX31_RS12045 at 74.675 kb on + strand, within EX31_RS12045 at 74.675 kb on + strand, within EX31_RS12045 at 74.675 kb on + strand, within EX31_RS12045 at 74.676 kb on - strand, within EX31_RS12045 at 74.676 kb on - strand, within EX31_RS12045 at 74.676 kb on - strand, within EX31_RS12045 at 74.676 kb on - strand, within EX31_RS12045 at 74.676 kb on - strand, within EX31_RS12045 at 74.676 kb on - strand, within EX31_RS12045 at 74.676 kb on - strand, within EX31_RS12045 at 74.676 kb on - strand, within EX31_RS12045 at 74.733 kb on + strand at 74.733 kb on + strand at 74.733 kb on + strand at 74.733 kb on + strand at 74.733 kb on + strand at 74.733 kb on + strand at 74.734 kb on - strand at 74.734 kb on - strand at 74.734 kb on - strand at 74.734 kb on - strand at 74.737 kb on + strand at 74.738 kb on - strand at 74.738 kb on - strand at 74.738 kb on - strand at 74.738 kb on - strand at 74.738 kb on - strand at 74.751 kb on + strand at 74.751 kb on + strand at 74.751 kb on + strand at 74.751 kb on + strand at 74.751 kb on + strand at 74.752 kb on - strand at 74.752 kb on - strand at 74.752 kb on - strand at 74.763 kb on + strand at 74.763 kb on + strand at 74.764 kb on - strand at 74.789 kb on - strand at 74.789 kb on - strand at 74.807 kb on + strand at 74.807 kb on + strand at 74.807 kb on + strand at 74.807 kb on + strand at 74.807 kb on + strand at 74.807 kb on + strand at 74.807 kb on + strand at 74.808 kb on - strand at 74.808 kb on - strand at 74.808 kb on - strand at 74.808 kb on - strand at 74.866 kb on + strand at 75.032 kb on + strand, within EX31_RS12050 at 75.033 kb on - strand, within EX31_RS12050 at 75.038 kb on - strand, within EX31_RS12050 at 75.079 kb on + strand, within EX31_RS12050 at 75.080 kb on - strand, within EX31_RS12050 at 75.080 kb on - strand, within EX31_RS12050 at 75.080 kb on - strand, within EX31_RS12050 at 75.118 kb on + strand, within EX31_RS12050 at 75.118 kb on + strand, within EX31_RS12050 at 75.119 kb on - strand, within EX31_RS12050 at 75.137 kb on - strand, within EX31_RS12050 at 75.137 kb on - strand, within EX31_RS12050 at 75.208 kb on + strand, within EX31_RS12050 at 75.209 kb on - strand, within EX31_RS12050 at 75.209 kb on - strand, within EX31_RS12050 at 75.209 kb on - strand, within EX31_RS12050 at 75.220 kb on + strand, within EX31_RS12050 at 75.220 kb on + strand, within EX31_RS12050 at 75.224 kb on + strand, within EX31_RS12050 at 75.224 kb on + strand, within EX31_RS12050 at 75.224 kb on + strand, within EX31_RS12050 at 75.224 kb on + strand, within EX31_RS12050 at 75.225 kb on - strand, within EX31_RS12050 at 75.225 kb on - strand, within EX31_RS12050 at 75.295 kb on + strand, within EX31_RS12050 at 75.295 kb on + strand, within EX31_RS12050 at 75.295 kb on + strand, within EX31_RS12050 at 75.295 kb on + strand, within EX31_RS12050 at 75.380 kb on + strand, within EX31_RS12050 at 75.381 kb on - strand, within EX31_RS12050 at 75.381 kb on - strand, within EX31_RS12050 at 75.381 kb on - strand, within EX31_RS12050 at 75.383 kb on + strand, within EX31_RS12050 at 75.383 kb on + strand, within EX31_RS12050 at 75.383 kb on + strand, within EX31_RS12050 at 75.383 kb on + strand, within EX31_RS12050 at 75.384 kb on - strand, within EX31_RS12050 at 75.514 kb on + strand, within EX31_RS12050 at 75.514 kb on + strand, within EX31_RS12050 at 75.515 kb on - strand, within EX31_RS12050 at 75.515 kb on - strand, within EX31_RS12050 at 75.515 kb on - strand, within EX31_RS12050 at 75.515 kb on - strand, within EX31_RS12050 at 75.515 kb on - strand, within EX31_RS12050 at 75.529 kb on + strand, within EX31_RS12050 at 75.529 kb on + strand, within EX31_RS12050 at 75.529 kb on + strand, within EX31_RS12050 at 75.529 kb on + strand, within EX31_RS12050 at 75.529 kb on + strand, within EX31_RS12050 at 75.530 kb on - strand, within EX31_RS12050 at 75.530 kb on - strand, within EX31_RS12050 at 75.530 kb on - strand, within EX31_RS12050 at 75.530 kb on - strand, within EX31_RS12050 at 75.539 kb on - strand, within EX31_RS12050 at 75.667 kb on + strand, within EX31_RS12050 at 75.667 kb on + strand, within EX31_RS12050 at 75.709 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 73,384 + EX31_RS12035 0.88 +0.9 73,384 + EX31_RS12035 0.88 -0.3 73,384 + EX31_RS12035 0.88 +0.2 73,385 - EX31_RS12035 0.88 -0.1 73,385 - EX31_RS12035 0.88 -0.3 73,469 + +0.6 73,470 - -0.1 73,470 - -0.9 73,470 - -0.0 73,489 + -0.1 73,489 + -0.3 73,489 + +1.3 73,489 + +0.6 73,490 - -0.1 73,490 - +0.1 73,532 + +0.7 73,725 + EX31_RS12040 0.15 +0.2 73,726 - EX31_RS12040 0.15 -1.2 73,726 - EX31_RS12040 0.15 -1.6 73,726 - EX31_RS12040 0.15 +1.0 73,726 - EX31_RS12040 0.15 -0.0 73,726 - EX31_RS12040 0.15 -0.5 73,886 + EX31_RS12040 0.36 -0.2 73,887 - EX31_RS12040 0.36 +0.2 73,887 - EX31_RS12040 0.36 -0.6 73,895 + EX31_RS12040 0.38 +0.1 73,898 + EX31_RS12040 0.38 +0.3 73,898 + EX31_RS12040 0.38 -1.0 73,899 - EX31_RS12040 0.38 +0.1 73,899 - EX31_RS12040 0.38 -0.4 73,899 - EX31_RS12040 0.38 -0.6 73,899 - EX31_RS12040 0.38 -0.5 74,021 + EX31_RS12040 0.55 -0.7 74,021 + EX31_RS12040 0.55 -0.7 74,021 + EX31_RS12040 0.55 -0.8 74,021 + EX31_RS12040 0.55 -1.6 74,021 + EX31_RS12040 0.55 -1.1 74,021 + EX31_RS12040 0.55 -0.5 74,022 - EX31_RS12040 0.55 +0.2 74,022 - EX31_RS12040 0.55 -1.0 74,022 - EX31_RS12040 0.55 +0.6 74,022 - EX31_RS12040 0.55 +0.1 74,022 - EX31_RS12040 0.55 +0.3 74,022 - EX31_RS12040 0.55 +0.4 74,022 - EX31_RS12040 0.55 -0.0 74,022 - EX31_RS12040 0.55 -0.2 74,053 + EX31_RS12040 0.59 +0.0 74,053 + EX31_RS12040 0.59 -0.4 74,054 - EX31_RS12040 0.59 -0.6 74,055 + EX31_RS12040 0.59 -0.1 74,055 + EX31_RS12040 0.59 +0.8 74,055 + EX31_RS12040 0.59 -0.7 74,055 + EX31_RS12040 0.59 +1.1 74,055 + EX31_RS12040 0.59 +0.6 74,055 + EX31_RS12040 0.59 -0.2 74,056 - EX31_RS12040 0.59 -0.7 74,056 - EX31_RS12040 0.59 +0.8 74,056 - EX31_RS12040 0.59 +2.0 74,056 - EX31_RS12040 0.59 +0.6 74,056 - EX31_RS12040 0.59 -0.4 74,067 + EX31_RS12040 0.61 -0.0 74,068 - EX31_RS12040 0.61 +0.1 74,068 - EX31_RS12040 0.61 +0.4 74,068 - EX31_RS12040 0.61 -0.4 74,068 - EX31_RS12040 0.61 +1.1 74,068 - EX31_RS12040 0.61 +1.7 74,076 + EX31_RS12040 0.62 -3.0 74,077 - EX31_RS12040 0.62 -1.0 74,077 - EX31_RS12040 0.62 -2.0 74,077 - EX31_RS12040 0.62 -0.2 74,077 - EX31_RS12040 0.62 -0.3 74,146 + EX31_RS12040 0.71 +2.0 74,156 + EX31_RS12040 0.73 +1.1 74,156 + EX31_RS12040 0.73 -0.0 74,157 - EX31_RS12040 0.73 +0.3 74,157 - EX31_RS12040 0.73 -0.9 74,157 - EX31_RS12040 0.73 +0.5 74,188 + EX31_RS12040 0.77 +0.3 74,189 - EX31_RS12040 0.77 +1.7 74,189 - EX31_RS12040 0.77 +0.1 74,352 - +0.0 74,355 + -0.7 74,355 + -0.2 74,355 + -0.3 74,375 + +0.3 74,376 - +0.1 74,452 + EX31_RS12045 0.22 +0.3 74,452 + EX31_RS12045 0.22 +0.8 74,452 + EX31_RS12045 0.22 +0.3 74,453 - EX31_RS12045 0.22 +0.1 74,492 + EX31_RS12045 0.33 -0.7 74,492 + EX31_RS12045 0.33 +0.9 74,492 + EX31_RS12045 0.33 -1.1 74,492 + EX31_RS12045 0.33 -0.4 74,493 - EX31_RS12045 0.33 -1.3 74,493 - EX31_RS12045 0.33 -0.1 74,493 - EX31_RS12045 0.33 +0.2 74,517 + EX31_RS12045 0.39 -0.9 74,518 - EX31_RS12045 0.39 -1.1 74,518 - EX31_RS12045 0.39 +0.5 74,518 - EX31_RS12045 0.39 -0.5 74,536 + EX31_RS12045 0.44 +0.7 74,537 - EX31_RS12045 0.44 -0.6 74,579 + EX31_RS12045 0.55 +1.0 74,580 - EX31_RS12045 0.56 -0.0 74,580 - EX31_RS12045 0.56 -0.6 74,628 + EX31_RS12045 0.68 -0.2 74,629 - EX31_RS12045 0.69 -0.0 74,629 - EX31_RS12045 0.69 -0.0 74,652 + EX31_RS12045 0.75 +0.4 74,652 + EX31_RS12045 0.75 +0.4 74,652 + EX31_RS12045 0.75 -0.3 74,652 + EX31_RS12045 0.75 -0.4 74,652 + EX31_RS12045 0.75 +0.1 74,652 + EX31_RS12045 0.75 +1.0 74,653 - EX31_RS12045 0.75 +0.2 74,653 - EX31_RS12045 0.75 -0.8 74,653 - EX31_RS12045 0.75 +1.1 74,653 - EX31_RS12045 0.75 +1.3 74,653 - EX31_RS12045 0.75 -0.1 74,675 + EX31_RS12045 0.81 -0.3 74,675 + EX31_RS12045 0.81 -1.3 74,675 + EX31_RS12045 0.81 -0.6 74,675 + EX31_RS12045 0.81 -0.1 74,675 + EX31_RS12045 0.81 +0.8 74,675 + EX31_RS12045 0.81 -0.4 74,675 + EX31_RS12045 0.81 -2.9 74,675 + EX31_RS12045 0.81 -0.8 74,676 - EX31_RS12045 0.81 -0.2 74,676 - EX31_RS12045 0.81 -0.9 74,676 - EX31_RS12045 0.81 +0.0 74,676 - EX31_RS12045 0.81 -0.4 74,676 - EX31_RS12045 0.81 -0.0 74,676 - EX31_RS12045 0.81 -0.8 74,676 - EX31_RS12045 0.81 +0.1 74,676 - EX31_RS12045 0.81 -0.3 74,733 + +1.0 74,733 + +0.8 74,733 + -0.6 74,733 + +0.8 74,733 + -0.7 74,733 + -1.1 74,734 - -1.4 74,734 - +0.0 74,734 - -0.4 74,734 - +0.5 74,737 + +0.1 74,738 - +1.0 74,738 - -0.1 74,738 - +0.5 74,738 - +0.5 74,738 - -0.7 74,751 + +0.8 74,751 + +1.0 74,751 + -0.5 74,751 + -0.8 74,751 + +0.4 74,752 - -0.6 74,752 - -1.0 74,752 - -0.8 74,763 + +0.2 74,763 + -0.7 74,764 - +0.4 74,789 - +0.6 74,789 - -0.1 74,807 + +0.2 74,807 + -0.7 74,807 + +0.3 74,807 + +0.6 74,807 + +0.7 74,807 + -0.2 74,807 + -0.6 74,808 - -1.4 74,808 - -0.6 74,808 - -0.4 74,808 - +0.6 74,866 + -0.6 75,032 + EX31_RS12050 0.18 -1.2 75,033 - EX31_RS12050 0.19 +0.2 75,038 - EX31_RS12050 0.19 -0.7 75,079 + EX31_RS12050 0.24 +0.9 75,080 - EX31_RS12050 0.24 -0.3 75,080 - EX31_RS12050 0.24 -0.7 75,080 - EX31_RS12050 0.24 -0.3 75,118 + EX31_RS12050 0.28 +0.3 75,118 + EX31_RS12050 0.28 +0.0 75,119 - EX31_RS12050 0.28 -0.6 75,137 - EX31_RS12050 0.30 +0.7 75,137 - EX31_RS12050 0.30 +0.5 75,208 + EX31_RS12050 0.38 -0.2 75,209 - EX31_RS12050 0.38 -0.4 75,209 - EX31_RS12050 0.38 +0.2 75,209 - EX31_RS12050 0.38 -0.1 75,220 + EX31_RS12050 0.39 +0.5 75,220 + EX31_RS12050 0.39 +0.3 75,224 + EX31_RS12050 0.40 -0.9 75,224 + EX31_RS12050 0.40 +0.0 75,224 + EX31_RS12050 0.40 -1.1 75,224 + EX31_RS12050 0.40 -0.5 75,225 - EX31_RS12050 0.40 +0.1 75,225 - EX31_RS12050 0.40 -0.3 75,295 + EX31_RS12050 0.47 -0.2 75,295 + EX31_RS12050 0.47 -0.6 75,295 + EX31_RS12050 0.47 -2.9 75,295 + EX31_RS12050 0.47 -1.3 75,380 + EX31_RS12050 0.57 +0.3 75,381 - EX31_RS12050 0.57 -0.2 75,381 - EX31_RS12050 0.57 -1.4 75,381 - EX31_RS12050 0.57 -0.8 75,383 + EX31_RS12050 0.57 -0.7 75,383 + EX31_RS12050 0.57 +0.4 75,383 + EX31_RS12050 0.57 -1.0 75,383 + EX31_RS12050 0.57 -1.0 75,384 - EX31_RS12050 0.57 +0.2 75,514 + EX31_RS12050 0.72 -0.3 75,514 + EX31_RS12050 0.72 +0.7 75,515 - EX31_RS12050 0.72 +0.2 75,515 - EX31_RS12050 0.72 +0.1 75,515 - EX31_RS12050 0.72 -0.1 75,515 - EX31_RS12050 0.72 -0.1 75,515 - EX31_RS12050 0.72 -0.6 75,529 + EX31_RS12050 0.73 -0.6 75,529 + EX31_RS12050 0.73 -0.3 75,529 + EX31_RS12050 0.73 -1.7 75,529 + EX31_RS12050 0.73 -1.1 75,529 + EX31_RS12050 0.73 +0.1 75,530 - EX31_RS12050 0.73 +0.4 75,530 - EX31_RS12050 0.73 -0.4 75,530 - EX31_RS12050 0.73 +0.8 75,530 - EX31_RS12050 0.73 +0.0 75,539 - EX31_RS12050 0.74 -0.5 75,667 + EX31_RS12050 0.89 -0.4 75,667 + EX31_RS12050 0.89 +0.8 75,709 + -0.4
Or see this region's nucleotide sequence