Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11360 and EX31_RS11365 overlap by 1 nucleotides EX31_RS11365 and EX31_RS11370 are separated by 62 nucleotides EX31_RS11370 and EX31_RS11375 are separated by 121 nucleotides
EX31_RS11360: EX31_RS11360 - chemotaxis response regulator protein-glutamate methylesterase, at 202,902 to 203,951
_RS11360
EX31_RS11365: EX31_RS11365 - protein-glutamate O-methyltransferase CheR, at 203,951 to 204,823
_RS11365
EX31_RS11370: EX31_RS11370 - HAMP domain-containing protein, at 204,886 to 206,556
_RS11370
EX31_RS11375: EX31_RS11375 - HAMP domain-containing protein, at 206,678 to 208,372
_RS11375
Position (kb) 204
205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 204.059 kb on - strand, within EX31_RS11365 at 204.059 kb on - strand, within EX31_RS11365 at 204.273 kb on - strand, within EX31_RS11365 at 204.465 kb on + strand, within EX31_RS11365 at 204.557 kb on - strand, within EX31_RS11365 at 204.557 kb on - strand, within EX31_RS11365 at 204.559 kb on + strand, within EX31_RS11365 at 204.607 kb on + strand, within EX31_RS11365 at 204.607 kb on + strand, within EX31_RS11365 at 204.608 kb on - strand, within EX31_RS11365 at 204.608 kb on - strand, within EX31_RS11365 at 204.609 kb on + strand, within EX31_RS11365 at 204.609 kb on + strand, within EX31_RS11365 at 204.609 kb on + strand, within EX31_RS11365 at 204.609 kb on + strand, within EX31_RS11365 at 204.609 kb on + strand, within EX31_RS11365 at 204.609 kb on + strand, within EX31_RS11365 at 204.609 kb on + strand, within EX31_RS11365 at 204.609 kb on + strand, within EX31_RS11365 at 204.610 kb on - strand, within EX31_RS11365 at 204.610 kb on - strand, within EX31_RS11365 at 204.610 kb on - strand, within EX31_RS11365 at 204.610 kb on - strand, within EX31_RS11365 at 204.610 kb on - strand, within EX31_RS11365 at 204.610 kb on - strand, within EX31_RS11365 at 204.610 kb on - strand, within EX31_RS11365 at 204.625 kb on + strand, within EX31_RS11365 at 204.626 kb on - strand, within EX31_RS11365 at 204.664 kb on - strand, within EX31_RS11365 at 204.712 kb on - strand, within EX31_RS11365 at 204.712 kb on - strand, within EX31_RS11365 at 204.712 kb on - strand, within EX31_RS11365 at 204.715 kb on + strand, within EX31_RS11365 at 204.715 kb on + strand, within EX31_RS11365 at 204.715 kb on + strand, within EX31_RS11365 at 204.715 kb on + strand, within EX31_RS11365 at 204.715 kb on + strand, within EX31_RS11365 at 204.716 kb on - strand, within EX31_RS11365 at 204.716 kb on - strand, within EX31_RS11365 at 204.716 kb on - strand, within EX31_RS11365 at 204.716 kb on - strand, within EX31_RS11365 at 204.716 kb on - strand, within EX31_RS11365 at 204.716 kb on - strand, within EX31_RS11365 at 204.716 kb on - strand, within EX31_RS11365 at 204.716 kb on - strand, within EX31_RS11365 at 204.716 kb on - strand, within EX31_RS11365 at 204.726 kb on - strand, within EX31_RS11365 at 204.790 kb on + strand at 204.838 kb on - strand at 204.838 kb on - strand at 204.854 kb on + strand at 204.903 kb on + strand at 204.904 kb on - strand at 204.904 kb on - strand at 204.937 kb on + strand at 205.120 kb on - strand, within EX31_RS11370 at 205.306 kb on + strand, within EX31_RS11370 at 205.306 kb on + strand, within EX31_RS11370 at 205.307 kb on - strand, within EX31_RS11370 at 205.468 kb on - strand, within EX31_RS11370 at 205.822 kb on - strand, within EX31_RS11370 at 205.860 kb on + strand, within EX31_RS11370 at 205.861 kb on - strand, within EX31_RS11370 at 205.861 kb on - strand, within EX31_RS11370 at 205.861 kb on - strand, within EX31_RS11370 at 206.051 kb on + strand, within EX31_RS11370 at 206.052 kb on - strand, within EX31_RS11370 at 206.060 kb on + strand, within EX31_RS11370 at 206.060 kb on + strand, within EX31_RS11370 at 206.060 kb on + strand, within EX31_RS11370 at 206.061 kb on - strand, within EX31_RS11370 at 206.166 kb on + strand, within EX31_RS11370 at 206.167 kb on - strand, within EX31_RS11370 at 206.184 kb on - strand, within EX31_RS11370 at 206.255 kb on + strand, within EX31_RS11370 at 206.362 kb on - strand, within EX31_RS11370 at 206.362 kb on - strand, within EX31_RS11370 at 206.569 kb on + strand at 206.569 kb on + strand at 206.569 kb on + strand at 206.569 kb on + strand at 206.570 kb on - strand at 206.570 kb on - strand at 206.570 kb on - strand at 206.570 kb on - strand at 206.570 kb on - strand at 206.570 kb on - strand at 206.595 kb on + strand at 206.596 kb on - strand at 206.596 kb on - strand at 206.601 kb on + strand at 206.604 kb on - strand at 206.667 kb on + strand at 206.667 kb on + strand at 206.667 kb on + strand at 206.668 kb on - strand at 206.668 kb on - strand at 206.668 kb on - strand at 206.668 kb on - strand at 206.668 kb on - strand at 206.668 kb on - strand at 206.668 kb on - strand at 206.671 kb on + strand at 206.671 kb on + strand at 206.671 kb on + strand at 206.671 kb on + strand at 206.671 kb on + strand at 206.671 kb on + strand at 206.671 kb on + strand at 206.671 kb on + strand at 206.671 kb on + strand at 206.671 kb on + strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.672 kb on - strand at 206.680 kb on - strand at 206.680 kb on - strand at 206.680 kb on - strand at 206.728 kb on + strand at 206.738 kb on - strand at 206.806 kb on + strand at 206.806 kb on + strand at 206.807 kb on - strand at 206.807 kb on - strand at 206.807 kb on - strand at 207.008 kb on - strand, within EX31_RS11375 at 207.089 kb on - strand, within EX31_RS11375 at 207.122 kb on - strand, within EX31_RS11375 at 207.448 kb on + strand, within EX31_RS11375 at 207.449 kb on - strand, within EX31_RS11375 at 207.490 kb on + strand, within EX31_RS11375 at 207.540 kb on + strand, within EX31_RS11375 at 207.541 kb on - strand, within EX31_RS11375
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 204,059 - EX31_RS11365 0.12 -0.5 204,059 - EX31_RS11365 0.12 -0.4 204,273 - EX31_RS11365 0.37 -0.2 204,465 + EX31_RS11365 0.59 +0.9 204,557 - EX31_RS11365 0.69 +0.3 204,557 - EX31_RS11365 0.69 +1.5 204,559 + EX31_RS11365 0.70 -0.4 204,607 + EX31_RS11365 0.75 +0.1 204,607 + EX31_RS11365 0.75 -0.1 204,608 - EX31_RS11365 0.75 -0.0 204,608 - EX31_RS11365 0.75 +0.8 204,609 + EX31_RS11365 0.75 +0.1 204,609 + EX31_RS11365 0.75 -0.8 204,609 + EX31_RS11365 0.75 -1.0 204,609 + EX31_RS11365 0.75 +0.3 204,609 + EX31_RS11365 0.75 +1.8 204,609 + EX31_RS11365 0.75 -3.2 204,609 + EX31_RS11365 0.75 +0.2 204,609 + EX31_RS11365 0.75 -0.6 204,610 - EX31_RS11365 0.75 -0.3 204,610 - EX31_RS11365 0.75 -0.5 204,610 - EX31_RS11365 0.75 +0.7 204,610 - EX31_RS11365 0.75 -0.1 204,610 - EX31_RS11365 0.75 +0.3 204,610 - EX31_RS11365 0.75 -2.7 204,610 - EX31_RS11365 0.75 -1.0 204,625 + EX31_RS11365 0.77 -1.7 204,626 - EX31_RS11365 0.77 +0.7 204,664 - EX31_RS11365 0.82 -1.0 204,712 - EX31_RS11365 0.87 -1.5 204,712 - EX31_RS11365 0.87 -0.7 204,712 - EX31_RS11365 0.87 -1.1 204,715 + EX31_RS11365 0.88 +0.4 204,715 + EX31_RS11365 0.88 -0.2 204,715 + EX31_RS11365 0.88 -0.2 204,715 + EX31_RS11365 0.88 -0.1 204,715 + EX31_RS11365 0.88 -0.0 204,716 - EX31_RS11365 0.88 -0.8 204,716 - EX31_RS11365 0.88 +1.8 204,716 - EX31_RS11365 0.88 +0.1 204,716 - EX31_RS11365 0.88 +0.3 204,716 - EX31_RS11365 0.88 -1.5 204,716 - EX31_RS11365 0.88 -1.4 204,716 - EX31_RS11365 0.88 +0.3 204,716 - EX31_RS11365 0.88 +0.7 204,716 - EX31_RS11365 0.88 -1.1 204,726 - EX31_RS11365 0.89 +0.1 204,790 + +0.1 204,838 - -0.4 204,838 - -1.0 204,854 + +0.7 204,903 + +0.7 204,904 - +0.2 204,904 - +0.0 204,937 + +0.3 205,120 - EX31_RS11370 0.14 -0.3 205,306 + EX31_RS11370 0.25 -0.9 205,306 + EX31_RS11370 0.25 +0.4 205,307 - EX31_RS11370 0.25 +0.3 205,468 - EX31_RS11370 0.35 -1.9 205,822 - EX31_RS11370 0.56 -0.6 205,860 + EX31_RS11370 0.58 -2.3 205,861 - EX31_RS11370 0.58 +0.6 205,861 - EX31_RS11370 0.58 +1.7 205,861 - EX31_RS11370 0.58 +0.7 206,051 + EX31_RS11370 0.70 -2.5 206,052 - EX31_RS11370 0.70 +0.5 206,060 + EX31_RS11370 0.70 -0.6 206,060 + EX31_RS11370 0.70 -2.6 206,060 + EX31_RS11370 0.70 -0.4 206,061 - EX31_RS11370 0.70 -0.4 206,166 + EX31_RS11370 0.77 -2.6 206,167 - EX31_RS11370 0.77 -0.9 206,184 - EX31_RS11370 0.78 +0.7 206,255 + EX31_RS11370 0.82 -0.5 206,362 - EX31_RS11370 0.88 -0.2 206,362 - EX31_RS11370 0.88 -1.0 206,569 + -1.4 206,569 + +0.7 206,569 + +0.8 206,569 + +0.6 206,570 - -0.5 206,570 - -0.7 206,570 - -0.3 206,570 - +0.3 206,570 - +0.1 206,570 - +0.6 206,595 + +1.5 206,596 - -1.7 206,596 - +0.1 206,601 + +0.0 206,604 - -1.3 206,667 + -0.5 206,667 + -2.2 206,667 + -0.7 206,668 - -1.0 206,668 - +0.9 206,668 - +0.6 206,668 - +0.3 206,668 - -1.1 206,668 - -0.1 206,668 - +0.2 206,671 + +0.1 206,671 + -0.0 206,671 + -1.8 206,671 + -1.4 206,671 + +0.3 206,671 + +0.1 206,671 + -0.9 206,671 + +0.6 206,671 + +0.3 206,671 + +0.4 206,672 - +0.4 206,672 - +2.0 206,672 - -2.0 206,672 - -1.7 206,672 - +1.3 206,672 - -0.8 206,672 - -0.7 206,672 - +0.3 206,672 - -0.2 206,672 - +1.2 206,672 - +0.3 206,672 - -0.7 206,672 - +0.2 206,672 - -0.9 206,672 - +0.4 206,672 - -1.2 206,680 - -0.0 206,680 - -0.6 206,680 - +2.7 206,728 + +1.8 206,738 - -0.5 206,806 + -0.4 206,806 + -0.5 206,807 - +0.1 206,807 - -0.7 206,807 - -0.3 207,008 - EX31_RS11375 0.19 +0.9 207,089 - EX31_RS11375 0.24 -1.1 207,122 - EX31_RS11375 0.26 +0.2 207,448 + EX31_RS11375 0.45 -0.7 207,449 - EX31_RS11375 0.45 +1.2 207,490 + EX31_RS11375 0.48 +0.4 207,540 + EX31_RS11375 0.51 -0.9 207,541 - EX31_RS11375 0.51 -0.0
Or see this region's nucleotide sequence