Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11185 and EX31_RS11190 are separated by 10 nucleotides EX31_RS11190 and EX31_RS11195 are separated by 41 nucleotides EX31_RS11195 and EX31_RS11200 are separated by 106 nucleotides
EX31_RS11185: EX31_RS11185 - MBL fold metallo-hydrolase, at 170,217 to 171,053
_RS11185
EX31_RS11190: EX31_RS11190 - hypothetical protein, at 171,064 to 171,390
_RS11190
EX31_RS11195: EX31_RS11195 - peptidylprolyl isomerase, at 171,432 to 171,995
_RS11195
EX31_RS11200: EX31_RS11200 - alpha/beta fold hydrolase, at 172,102 to 172,884
_RS11200
Position (kb) 171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.447 kb on + strand, within EX31_RS11185 at 170.576 kb on + strand, within EX31_RS11185 at 170.576 kb on + strand, within EX31_RS11185 at 170.651 kb on + strand, within EX31_RS11185 at 170.667 kb on + strand, within EX31_RS11185 at 170.726 kb on + strand, within EX31_RS11185 at 170.779 kb on - strand, within EX31_RS11185 at 170.855 kb on + strand, within EX31_RS11185 at 170.878 kb on - strand, within EX31_RS11185 at 170.891 kb on + strand, within EX31_RS11185 at 170.891 kb on + strand, within EX31_RS11185 at 170.892 kb on - strand, within EX31_RS11185 at 171.001 kb on - strand at 171.018 kb on - strand at 171.065 kb on + strand at 171.078 kb on - strand at 171.081 kb on + strand at 171.082 kb on - strand at 171.082 kb on - strand at 171.082 kb on - strand at 171.142 kb on + strand, within EX31_RS11190 at 171.146 kb on - strand, within EX31_RS11190 at 171.206 kb on - strand, within EX31_RS11190 at 171.206 kb on - strand, within EX31_RS11190 at 171.241 kb on + strand, within EX31_RS11190 at 171.242 kb on - strand, within EX31_RS11190 at 171.242 kb on - strand, within EX31_RS11190 at 171.258 kb on - strand, within EX31_RS11190 at 171.258 kb on - strand, within EX31_RS11190 at 171.273 kb on + strand, within EX31_RS11190 at 171.298 kb on + strand, within EX31_RS11190 at 171.369 kb on + strand at 171.371 kb on + strand at 171.371 kb on + strand at 171.372 kb on - strand at 171.372 kb on - strand at 171.378 kb on + strand at 171.379 kb on - strand at 171.379 kb on - strand at 171.379 kb on - strand at 171.381 kb on + strand at 171.433 kb on + strand at 171.434 kb on - strand at 171.435 kb on + strand at 171.438 kb on - strand at 171.453 kb on + strand at 171.454 kb on - strand at 171.528 kb on + strand, within EX31_RS11195 at 171.529 kb on - strand, within EX31_RS11195 at 171.529 kb on - strand, within EX31_RS11195 at 171.565 kb on + strand, within EX31_RS11195 at 171.566 kb on - strand, within EX31_RS11195 at 171.566 kb on - strand, within EX31_RS11195 at 171.725 kb on + strand, within EX31_RS11195 at 171.725 kb on + strand, within EX31_RS11195 at 171.726 kb on - strand, within EX31_RS11195 at 171.765 kb on + strand, within EX31_RS11195 at 171.765 kb on + strand, within EX31_RS11195 at 171.765 kb on + strand, within EX31_RS11195 at 171.765 kb on + strand, within EX31_RS11195 at 171.765 kb on + strand, within EX31_RS11195 at 171.766 kb on - strand, within EX31_RS11195 at 171.766 kb on - strand, within EX31_RS11195 at 171.766 kb on - strand, within EX31_RS11195 at 171.808 kb on - strand, within EX31_RS11195 at 171.820 kb on - strand, within EX31_RS11195 at 171.896 kb on + strand, within EX31_RS11195 at 171.900 kb on - strand, within EX31_RS11195 at 171.978 kb on - strand at 171.978 kb on - strand at 171.978 kb on - strand at 172.056 kb on - strand at 172.056 kb on - strand at 172.067 kb on + strand at 172.068 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.166 kb on + strand at 172.167 kb on - strand at 172.252 kb on - strand, within EX31_RS11200 at 172.299 kb on + strand, within EX31_RS11200 at 172.300 kb on - strand, within EX31_RS11200 at 172.335 kb on - strand, within EX31_RS11200 at 172.335 kb on - strand, within EX31_RS11200 at 172.335 kb on - strand, within EX31_RS11200 at 172.387 kb on - strand, within EX31_RS11200 at 172.475 kb on - strand, within EX31_RS11200 at 172.475 kb on - strand, within EX31_RS11200 at 172.475 kb on - strand, within EX31_RS11200 at 172.530 kb on + strand, within EX31_RS11200 at 172.619 kb on + strand, within EX31_RS11200 at 172.620 kb on - strand, within EX31_RS11200 at 172.620 kb on - strand, within EX31_RS11200 at 172.886 kb on + strand at 172.886 kb on + strand at 172.887 kb on - strand at 172.897 kb on - strand at 172.938 kb on - strand at 172.964 kb on - strand at 172.964 kb on - strand at 172.965 kb on + strand at 172.965 kb on + strand at 172.966 kb on - strand at 172.966 kb on - strand at 172.966 kb on - strand at 172.966 kb on - strand at 172.966 kb on - strand at 172.991 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 170,447 + EX31_RS11185 0.27 +2.1 170,576 + EX31_RS11185 0.43 +0.7 170,576 + EX31_RS11185 0.43 -0.9 170,651 + EX31_RS11185 0.52 +0.8 170,667 + EX31_RS11185 0.54 +2.0 170,726 + EX31_RS11185 0.61 +1.8 170,779 - EX31_RS11185 0.67 +1.9 170,855 + EX31_RS11185 0.76 +0.3 170,878 - EX31_RS11185 0.79 +1.4 170,891 + EX31_RS11185 0.81 +0.8 170,891 + EX31_RS11185 0.81 -0.1 170,892 - EX31_RS11185 0.81 +1.4 171,001 - +1.5 171,018 - +1.1 171,065 + +1.6 171,078 - -1.2 171,081 + -1.7 171,082 - -0.0 171,082 - +0.2 171,082 - +0.7 171,142 + EX31_RS11190 0.24 +0.1 171,146 - EX31_RS11190 0.25 -0.0 171,206 - EX31_RS11190 0.43 -2.1 171,206 - EX31_RS11190 0.43 +0.3 171,241 + EX31_RS11190 0.54 -0.8 171,242 - EX31_RS11190 0.54 +0.8 171,242 - EX31_RS11190 0.54 -0.2 171,258 - EX31_RS11190 0.59 -2.0 171,258 - EX31_RS11190 0.59 +1.3 171,273 + EX31_RS11190 0.64 +0.9 171,298 + EX31_RS11190 0.72 -0.9 171,369 + +0.6 171,371 + +2.2 171,371 + -1.1 171,372 - -1.2 171,372 - +0.6 171,378 + +1.0 171,379 - +1.5 171,379 - -1.5 171,379 - -0.4 171,381 + -0.5 171,433 + +1.0 171,434 - +1.2 171,435 + +0.3 171,438 - -0.4 171,453 + -0.0 171,454 - -0.2 171,528 + EX31_RS11195 0.17 +0.6 171,529 - EX31_RS11195 0.17 -1.0 171,529 - EX31_RS11195 0.17 -2.1 171,565 + EX31_RS11195 0.24 +2.3 171,566 - EX31_RS11195 0.24 -0.6 171,566 - EX31_RS11195 0.24 +2.0 171,725 + EX31_RS11195 0.52 +0.8 171,725 + EX31_RS11195 0.52 +1.0 171,726 - EX31_RS11195 0.52 -0.1 171,765 + EX31_RS11195 0.59 +0.2 171,765 + EX31_RS11195 0.59 -0.3 171,765 + EX31_RS11195 0.59 +0.4 171,765 + EX31_RS11195 0.59 +1.7 171,765 + EX31_RS11195 0.59 -0.2 171,766 - EX31_RS11195 0.59 -0.9 171,766 - EX31_RS11195 0.59 +1.2 171,766 - EX31_RS11195 0.59 -0.6 171,808 - EX31_RS11195 0.67 -0.5 171,820 - EX31_RS11195 0.69 +0.1 171,896 + EX31_RS11195 0.82 -0.8 171,900 - EX31_RS11195 0.83 -1.9 171,978 - -0.0 171,978 - -0.6 171,978 - +0.7 172,056 - -0.4 172,056 - +0.7 172,067 + -0.7 172,068 - -1.5 172,111 - +0.1 172,111 - +0.9 172,166 + -0.1 172,167 - -1.6 172,252 - EX31_RS11200 0.19 +0.9 172,299 + EX31_RS11200 0.25 +0.1 172,300 - EX31_RS11200 0.25 +0.7 172,335 - EX31_RS11200 0.30 -2.3 172,335 - EX31_RS11200 0.30 +1.0 172,335 - EX31_RS11200 0.30 +1.5 172,387 - EX31_RS11200 0.36 +0.9 172,475 - EX31_RS11200 0.48 +0.0 172,475 - EX31_RS11200 0.48 +0.1 172,475 - EX31_RS11200 0.48 -1.9 172,530 + EX31_RS11200 0.55 -0.3 172,619 + EX31_RS11200 0.66 -2.2 172,620 - EX31_RS11200 0.66 -1.6 172,620 - EX31_RS11200 0.66 +0.8 172,886 + +1.0 172,886 + +0.1 172,887 - +0.6 172,897 - -0.4 172,938 - +1.1 172,964 - +1.4 172,964 - -0.5 172,965 + +0.5 172,965 + -0.7 172,966 - -1.3 172,966 - +0.0 172,966 - +0.6 172,966 - +0.3 172,966 - +0.3 172,991 - +0.3
Or see this region's nucleotide sequence