Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10300 and EX31_RS10305 are separated by 0 nucleotides EX31_RS10305 and EX31_RS10310 are separated by 262 nucleotides
EX31_RS10300: EX31_RS10300 - LysR family transcriptional regulator, at 274,164 to 275,099
_RS10300
EX31_RS10305: EX31_RS10305 - PTS transporter subunit EIIB, at 275,100 to 275,366
_RS10305
EX31_RS10310: EX31_RS10310 - 2-hydroxyacid dehydrogenase, at 275,629 to 276,579
_RS10310
Position (kb) 275
276 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 274.145 kb on + strand at 274.145 kb on + strand at 274.248 kb on - strand at 274.262 kb on + strand, within EX31_RS10300 at 274.262 kb on + strand, within EX31_RS10300 at 274.262 kb on + strand, within EX31_RS10300 at 274.263 kb on - strand, within EX31_RS10300 at 274.268 kb on + strand, within EX31_RS10300 at 274.268 kb on + strand, within EX31_RS10300 at 274.271 kb on + strand, within EX31_RS10300 at 274.385 kb on + strand, within EX31_RS10300 at 274.385 kb on + strand, within EX31_RS10300 at 274.418 kb on + strand, within EX31_RS10300 at 274.484 kb on - strand, within EX31_RS10300 at 274.503 kb on + strand, within EX31_RS10300 at 274.525 kb on + strand, within EX31_RS10300 at 274.525 kb on + strand, within EX31_RS10300 at 274.529 kb on + strand, within EX31_RS10300 at 274.570 kb on + strand, within EX31_RS10300 at 274.793 kb on + strand, within EX31_RS10300 at 274.793 kb on + strand, within EX31_RS10300 at 274.793 kb on + strand, within EX31_RS10300 at 274.793 kb on + strand, within EX31_RS10300 at 274.794 kb on - strand, within EX31_RS10300 at 274.794 kb on - strand, within EX31_RS10300 at 274.839 kb on - strand, within EX31_RS10300 at 274.839 kb on - strand, within EX31_RS10300 at 274.856 kb on + strand, within EX31_RS10300 at 274.856 kb on + strand, within EX31_RS10300 at 274.857 kb on - strand, within EX31_RS10300 at 274.935 kb on + strand, within EX31_RS10300 at 274.936 kb on - strand, within EX31_RS10300 at 274.936 kb on - strand, within EX31_RS10300 at 274.955 kb on + strand, within EX31_RS10300 at 274.956 kb on - strand, within EX31_RS10300 at 274.957 kb on + strand, within EX31_RS10300 at 274.957 kb on + strand, within EX31_RS10300 at 274.958 kb on - strand, within EX31_RS10300 at 274.958 kb on - strand, within EX31_RS10300 at 274.958 kb on - strand, within EX31_RS10300 at 275.004 kb on + strand, within EX31_RS10300 at 275.004 kb on + strand, within EX31_RS10300 at 275.004 kb on + strand, within EX31_RS10300 at 275.004 kb on + strand, within EX31_RS10300 at 275.005 kb on - strand, within EX31_RS10300 at 275.005 kb on - strand, within EX31_RS10300 at 275.005 kb on - strand, within EX31_RS10300 at 275.005 kb on - strand, within EX31_RS10300 at 275.006 kb on + strand at 275.102 kb on - strand at 275.205 kb on + strand, within EX31_RS10305 at 275.232 kb on + strand, within EX31_RS10305 at 275.232 kb on + strand, within EX31_RS10305 at 275.233 kb on - strand, within EX31_RS10305 at 275.283 kb on - strand, within EX31_RS10305 at 275.283 kb on - strand, within EX31_RS10305 at 275.293 kb on + strand, within EX31_RS10305 at 275.293 kb on + strand, within EX31_RS10305 at 275.293 kb on + strand, within EX31_RS10305 at 275.293 kb on + strand, within EX31_RS10305 at 275.294 kb on - strand, within EX31_RS10305 at 275.294 kb on - strand, within EX31_RS10305 at 275.294 kb on - strand, within EX31_RS10305 at 275.303 kb on + strand, within EX31_RS10305 at 275.304 kb on - strand, within EX31_RS10305 at 275.340 kb on + strand at 275.341 kb on - strand at 275.387 kb on - strand at 275.405 kb on + strand at 275.405 kb on + strand at 275.405 kb on + strand at 275.406 kb on - strand at 275.406 kb on - strand at 275.406 kb on - strand at 275.406 kb on - strand at 275.406 kb on - strand at 275.406 kb on - strand at 275.463 kb on + strand at 275.536 kb on + strand at 275.536 kb on + strand at 275.536 kb on + strand at 275.537 kb on - strand at 275.537 kb on - strand at 275.537 kb on - strand at 275.574 kb on + strand at 275.575 kb on - strand at 275.604 kb on - strand at 275.670 kb on - strand at 275.724 kb on + strand, within EX31_RS10310 at 275.725 kb on - strand, within EX31_RS10310 at 275.725 kb on - strand, within EX31_RS10310 at 275.725 kb on - strand, within EX31_RS10310 at 275.725 kb on - strand, within EX31_RS10310 at 275.887 kb on - strand, within EX31_RS10310 at 275.923 kb on + strand, within EX31_RS10310 at 275.924 kb on - strand, within EX31_RS10310 at 276.007 kb on + strand, within EX31_RS10310 at 276.007 kb on + strand, within EX31_RS10310 at 276.008 kb on - strand, within EX31_RS10310 at 276.008 kb on - strand, within EX31_RS10310 at 276.008 kb on - strand, within EX31_RS10310 at 276.008 kb on - strand, within EX31_RS10310 at 276.008 kb on - strand, within EX31_RS10310 at 276.008 kb on - strand, within EX31_RS10310 at 276.026 kb on + strand, within EX31_RS10310 at 276.072 kb on + strand, within EX31_RS10310 at 276.072 kb on + strand, within EX31_RS10310 at 276.073 kb on - strand, within EX31_RS10310 at 276.075 kb on + strand, within EX31_RS10310 at 276.075 kb on + strand, within EX31_RS10310 at 276.075 kb on + strand, within EX31_RS10310 at 276.075 kb on + strand, within EX31_RS10310 at 276.076 kb on - strand, within EX31_RS10310 at 276.076 kb on - strand, within EX31_RS10310 at 276.076 kb on - strand, within EX31_RS10310 at 276.154 kb on - strand, within EX31_RS10310 at 276.239 kb on - strand, within EX31_RS10310 at 276.277 kb on + strand, within EX31_RS10310 at 276.333 kb on + strand, within EX31_RS10310
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 274,145 + -0.4 274,145 + -2.5 274,248 - -0.3 274,262 + EX31_RS10300 0.10 -0.1 274,262 + EX31_RS10300 0.10 -0.9 274,262 + EX31_RS10300 0.10 +0.5 274,263 - EX31_RS10300 0.11 +0.1 274,268 + EX31_RS10300 0.11 +1.7 274,268 + EX31_RS10300 0.11 -0.8 274,271 + EX31_RS10300 0.11 +1.4 274,385 + EX31_RS10300 0.24 -1.7 274,385 + EX31_RS10300 0.24 +1.0 274,418 + EX31_RS10300 0.27 +0.7 274,484 - EX31_RS10300 0.34 -0.4 274,503 + EX31_RS10300 0.36 -0.3 274,525 + EX31_RS10300 0.39 -0.9 274,525 + EX31_RS10300 0.39 -0.5 274,529 + EX31_RS10300 0.39 +0.8 274,570 + EX31_RS10300 0.43 +0.0 274,793 + EX31_RS10300 0.67 +0.9 274,793 + EX31_RS10300 0.67 +0.3 274,793 + EX31_RS10300 0.67 -0.5 274,793 + EX31_RS10300 0.67 -1.5 274,794 - EX31_RS10300 0.67 +1.1 274,794 - EX31_RS10300 0.67 -0.2 274,839 - EX31_RS10300 0.72 +0.2 274,839 - EX31_RS10300 0.72 +0.3 274,856 + EX31_RS10300 0.74 +0.6 274,856 + EX31_RS10300 0.74 -1.3 274,857 - EX31_RS10300 0.74 +0.2 274,935 + EX31_RS10300 0.82 -0.8 274,936 - EX31_RS10300 0.82 -0.1 274,936 - EX31_RS10300 0.82 -0.3 274,955 + EX31_RS10300 0.85 -2.4 274,956 - EX31_RS10300 0.85 -0.6 274,957 + EX31_RS10300 0.85 -1.2 274,957 + EX31_RS10300 0.85 +0.1 274,958 - EX31_RS10300 0.85 -0.3 274,958 - EX31_RS10300 0.85 -1.9 274,958 - EX31_RS10300 0.85 +0.5 275,004 + EX31_RS10300 0.90 +0.3 275,004 + EX31_RS10300 0.90 +0.4 275,004 + EX31_RS10300 0.90 +0.2 275,004 + EX31_RS10300 0.90 -0.0 275,005 - EX31_RS10300 0.90 +0.3 275,005 - EX31_RS10300 0.90 -0.8 275,005 - EX31_RS10300 0.90 -0.3 275,005 - EX31_RS10300 0.90 +1.9 275,006 + +0.8 275,102 - +0.3 275,205 + EX31_RS10305 0.39 -2.3 275,232 + EX31_RS10305 0.49 +0.1 275,232 + EX31_RS10305 0.49 -0.5 275,233 - EX31_RS10305 0.50 -0.5 275,283 - EX31_RS10305 0.69 -0.1 275,283 - EX31_RS10305 0.69 +0.5 275,293 + EX31_RS10305 0.72 -2.0 275,293 + EX31_RS10305 0.72 -0.1 275,293 + EX31_RS10305 0.72 -2.2 275,293 + EX31_RS10305 0.72 -0.8 275,294 - EX31_RS10305 0.73 -0.4 275,294 - EX31_RS10305 0.73 +1.1 275,294 - EX31_RS10305 0.73 -0.3 275,303 + EX31_RS10305 0.76 +0.2 275,304 - EX31_RS10305 0.76 -0.5 275,340 + +0.1 275,341 - -0.1 275,387 - -0.8 275,405 + +1.7 275,405 + +1.2 275,405 + -2.4 275,406 - +0.1 275,406 - -0.8 275,406 - +0.4 275,406 - -0.3 275,406 - -1.4 275,406 - +0.0 275,463 + +0.4 275,536 + +0.2 275,536 + +1.1 275,536 + -0.8 275,537 - +1.5 275,537 - +1.3 275,537 - -0.6 275,574 + +1.3 275,575 - -0.9 275,604 - -1.6 275,670 - -1.9 275,724 + EX31_RS10310 0.10 -0.5 275,725 - EX31_RS10310 0.10 +0.7 275,725 - EX31_RS10310 0.10 -0.4 275,725 - EX31_RS10310 0.10 -3.2 275,725 - EX31_RS10310 0.10 -1.0 275,887 - EX31_RS10310 0.27 -0.3 275,923 + EX31_RS10310 0.31 +0.4 275,924 - EX31_RS10310 0.31 -0.7 276,007 + EX31_RS10310 0.40 -0.8 276,007 + EX31_RS10310 0.40 +0.7 276,008 - EX31_RS10310 0.40 -0.3 276,008 - EX31_RS10310 0.40 +0.2 276,008 - EX31_RS10310 0.40 +0.4 276,008 - EX31_RS10310 0.40 -0.2 276,008 - EX31_RS10310 0.40 -0.6 276,008 - EX31_RS10310 0.40 +0.2 276,026 + EX31_RS10310 0.42 +0.3 276,072 + EX31_RS10310 0.47 +1.6 276,072 + EX31_RS10310 0.47 -1.1 276,073 - EX31_RS10310 0.47 -0.1 276,075 + EX31_RS10310 0.47 +1.2 276,075 + EX31_RS10310 0.47 +1.0 276,075 + EX31_RS10310 0.47 +1.6 276,075 + EX31_RS10310 0.47 +1.2 276,076 - EX31_RS10310 0.47 -0.2 276,076 - EX31_RS10310 0.47 -0.2 276,076 - EX31_RS10310 0.47 +0.4 276,154 - EX31_RS10310 0.55 -0.8 276,239 - EX31_RS10310 0.64 +0.1 276,277 + EX31_RS10310 0.68 -0.7 276,333 + EX31_RS10310 0.74 +0.2
Or see this region's nucleotide sequence