Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09675 and EX31_RS09680 are separated by 445 nucleotides EX31_RS09680 and EX31_RS09685 overlap by 8 nucleotides EX31_RS09685 and EX31_RS09690 are separated by 280 nucleotides EX31_RS09690 and EX31_RS09695 are separated by 71 nucleotides
EX31_RS09675: EX31_RS09675 - porin OmpC, at 136,262 to 137,371
_RS09675
EX31_RS09680: EX31_RS09680 - hypothetical protein, at 137,817 to 138,104
_RS09680
EX31_RS09685: EX31_RS09685 - GNAT family N-acetyltransferase, at 138,097 to 138,612
_RS09685
EX31_RS09690: EX31_RS09690 - undecaprenyl-diphosphate phosphatase, at 138,893 to 139,498
_RS09690
EX31_RS09695: EX31_RS09695 - D-alanyl-D-alanine carboxypeptidase, at 139,570 to 140,781
_RS09695
Position (kb) 138
139 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 137.120 kb on - strand, within EX31_RS09675 at 137.204 kb on - strand, within EX31_RS09675 at 137.204 kb on - strand, within EX31_RS09675 at 137.204 kb on - strand, within EX31_RS09675 at 137.204 kb on - strand, within EX31_RS09675 at 137.204 kb on - strand, within EX31_RS09675 at 137.204 kb on - strand, within EX31_RS09675 at 137.204 kb on - strand, within EX31_RS09675 at 137.204 kb on - strand, within EX31_RS09675 at 137.204 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.206 kb on - strand, within EX31_RS09675 at 137.282 kb on - strand at 137.364 kb on - strand at 137.393 kb on - strand at 137.395 kb on - strand at 137.446 kb on - strand at 137.574 kb on - strand at 137.629 kb on + strand at 137.676 kb on + strand at 137.816 kb on - strand at 137.904 kb on + strand, within EX31_RS09680 at 137.905 kb on - strand, within EX31_RS09680 at 137.905 kb on - strand, within EX31_RS09680 at 137.962 kb on + strand, within EX31_RS09680 at 137.963 kb on - strand, within EX31_RS09680 at 138.013 kb on + strand, within EX31_RS09680 at 138.014 kb on - strand, within EX31_RS09680 at 138.017 kb on + strand, within EX31_RS09680 at 138.017 kb on + strand, within EX31_RS09680 at 138.017 kb on + strand, within EX31_RS09680 at 138.018 kb on - strand, within EX31_RS09680 at 138.018 kb on - strand, within EX31_RS09680 at 138.018 kb on - strand, within EX31_RS09680 at 138.019 kb on + strand, within EX31_RS09680 at 138.019 kb on + strand, within EX31_RS09680 at 138.020 kb on - strand, within EX31_RS09680 at 138.020 kb on - strand, within EX31_RS09680 at 138.020 kb on - strand, within EX31_RS09680 at 138.050 kb on + strand, within EX31_RS09680 at 138.098 kb on + strand at 138.155 kb on + strand, within EX31_RS09685 at 138.155 kb on + strand, within EX31_RS09685 at 138.156 kb on - strand, within EX31_RS09685 at 138.156 kb on - strand, within EX31_RS09685 at 138.156 kb on - strand, within EX31_RS09685 at 138.216 kb on + strand, within EX31_RS09685 at 138.329 kb on + strand, within EX31_RS09685 at 138.330 kb on - strand, within EX31_RS09685 at 138.330 kb on - strand, within EX31_RS09685 at 138.330 kb on - strand, within EX31_RS09685 at 138.341 kb on - strand, within EX31_RS09685 at 138.382 kb on - strand, within EX31_RS09685 at 138.725 kb on + strand at 138.726 kb on - strand at 138.726 kb on - strand at 138.807 kb on - strand at 138.807 kb on - strand at 138.862 kb on + strand at 138.862 kb on + strand at 138.862 kb on + strand at 138.874 kb on + strand at 138.875 kb on - strand at 138.875 kb on - strand at 138.876 kb on + strand at 138.877 kb on - strand at 138.877 kb on - strand at 138.886 kb on + strand at 138.887 kb on - strand at 138.887 kb on - strand at 138.889 kb on + strand at 138.890 kb on - strand at 138.982 kb on + strand, within EX31_RS09690 at 139.054 kb on + strand, within EX31_RS09690 at 139.076 kb on - strand, within EX31_RS09690 at 139.171 kb on + strand, within EX31_RS09690 at 139.171 kb on + strand, within EX31_RS09690 at 139.219 kb on + strand, within EX31_RS09690 at 139.219 kb on + strand, within EX31_RS09690 at 139.220 kb on - strand, within EX31_RS09690 at 139.264 kb on + strand, within EX31_RS09690 at 139.322 kb on + strand, within EX31_RS09690 at 139.368 kb on + strand, within EX31_RS09690 at 139.372 kb on + strand, within EX31_RS09690 at 139.372 kb on + strand, within EX31_RS09690 at 139.372 kb on + strand, within EX31_RS09690 at 139.372 kb on + strand, within EX31_RS09690 at 139.372 kb on + strand, within EX31_RS09690 at 139.373 kb on - strand, within EX31_RS09690 at 139.373 kb on - strand, within EX31_RS09690 at 139.373 kb on - strand, within EX31_RS09690 at 139.584 kb on + strand at 139.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 137,120 - EX31_RS09675 0.77 +0.0 137,204 - EX31_RS09675 0.85 +0.2 137,204 - EX31_RS09675 0.85 -0.3 137,204 - EX31_RS09675 0.85 -0.3 137,204 - EX31_RS09675 0.85 +0.3 137,204 - EX31_RS09675 0.85 +0.7 137,204 - EX31_RS09675 0.85 +1.0 137,204 - EX31_RS09675 0.85 -1.1 137,204 - EX31_RS09675 0.85 -0.5 137,204 - EX31_RS09675 0.85 -0.0 137,206 - EX31_RS09675 0.85 -0.2 137,206 - EX31_RS09675 0.85 +0.7 137,206 - EX31_RS09675 0.85 -1.7 137,206 - EX31_RS09675 0.85 +0.3 137,206 - EX31_RS09675 0.85 +0.0 137,206 - EX31_RS09675 0.85 -0.2 137,206 - EX31_RS09675 0.85 -0.3 137,206 - EX31_RS09675 0.85 -0.5 137,206 - EX31_RS09675 0.85 +0.1 137,206 - EX31_RS09675 0.85 +0.4 137,206 - EX31_RS09675 0.85 -0.1 137,206 - EX31_RS09675 0.85 +0.2 137,206 - EX31_RS09675 0.85 +0.0 137,206 - EX31_RS09675 0.85 -0.0 137,206 - EX31_RS09675 0.85 +0.7 137,206 - EX31_RS09675 0.85 -1.7 137,206 - EX31_RS09675 0.85 -0.3 137,206 - EX31_RS09675 0.85 -0.3 137,206 - EX31_RS09675 0.85 +0.3 137,282 - +0.1 137,364 - -0.6 137,393 - -1.3 137,395 - +0.2 137,446 - +0.3 137,574 - -0.4 137,629 + -0.9 137,676 + -2.2 137,816 - +0.3 137,904 + EX31_RS09680 0.30 -0.8 137,905 - EX31_RS09680 0.31 -1.1 137,905 - EX31_RS09680 0.31 +2.9 137,962 + EX31_RS09680 0.50 +0.7 137,963 - EX31_RS09680 0.51 +0.2 138,013 + EX31_RS09680 0.68 -1.4 138,014 - EX31_RS09680 0.68 -2.0 138,017 + EX31_RS09680 0.69 +0.1 138,017 + EX31_RS09680 0.69 +0.5 138,017 + EX31_RS09680 0.69 -0.5 138,018 - EX31_RS09680 0.70 -0.1 138,018 - EX31_RS09680 0.70 +0.4 138,018 - EX31_RS09680 0.70 +0.7 138,019 + EX31_RS09680 0.70 -0.3 138,019 + EX31_RS09680 0.70 +0.4 138,020 - EX31_RS09680 0.70 +0.0 138,020 - EX31_RS09680 0.70 +1.2 138,020 - EX31_RS09680 0.70 -2.0 138,050 + EX31_RS09680 0.81 -0.1 138,098 + +1.0 138,155 + EX31_RS09685 0.11 -0.5 138,155 + EX31_RS09685 0.11 +0.1 138,156 - EX31_RS09685 0.11 +0.9 138,156 - EX31_RS09685 0.11 +0.9 138,156 - EX31_RS09685 0.11 -0.8 138,216 + EX31_RS09685 0.23 -1.8 138,329 + EX31_RS09685 0.45 -2.6 138,330 - EX31_RS09685 0.45 -0.6 138,330 - EX31_RS09685 0.45 -1.9 138,330 - EX31_RS09685 0.45 -0.7 138,341 - EX31_RS09685 0.47 +0.4 138,382 - EX31_RS09685 0.55 -1.6 138,725 + +1.6 138,726 - +0.0 138,726 - -1.2 138,807 - -0.3 138,807 - +0.3 138,862 + -0.6 138,862 + -0.2 138,862 + +1.9 138,874 + +0.1 138,875 - +1.2 138,875 - +0.5 138,876 + -1.0 138,877 - +0.7 138,877 - +0.2 138,886 + +1.3 138,887 - -0.5 138,887 - -0.2 138,889 + +0.1 138,890 - +0.8 138,982 + EX31_RS09690 0.15 +0.4 139,054 + EX31_RS09690 0.27 +0.1 139,076 - EX31_RS09690 0.30 -1.3 139,171 + EX31_RS09690 0.46 -0.4 139,171 + EX31_RS09690 0.46 -0.9 139,219 + EX31_RS09690 0.54 +0.5 139,219 + EX31_RS09690 0.54 +0.4 139,220 - EX31_RS09690 0.54 +1.1 139,264 + EX31_RS09690 0.61 +1.6 139,322 + EX31_RS09690 0.71 -0.2 139,368 + EX31_RS09690 0.78 +0.1 139,372 + EX31_RS09690 0.79 +1.9 139,372 + EX31_RS09690 0.79 +1.0 139,372 + EX31_RS09690 0.79 -0.7 139,372 + EX31_RS09690 0.79 -0.3 139,372 + EX31_RS09690 0.79 +0.8 139,373 - EX31_RS09690 0.79 +0.5 139,373 - EX31_RS09690 0.79 -1.0 139,373 - EX31_RS09690 0.79 +0.7 139,584 + +1.2 139,585 - -1.4
Or see this region's nucleotide sequence