Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09590 and EX31_RS09595 are separated by 167 nucleotides EX31_RS09595 and EX31_RS09600 are separated by 3 nucleotides EX31_RS09600 and EX31_RS09605 are separated by 5 nucleotides
EX31_RS09590: EX31_RS09590 - flagellar type III secretion system pore protein FliP, at 121,356 to 122,138
_RS09590
EX31_RS09595: EX31_RS09595 - flagellar biosynthesis protein FliQ, at 122,306 to 122,575
_RS09595
EX31_RS09600: EX31_RS09600 - flagellar type III secretion system protein FliR, at 122,579 to 123,364
_RS09600
EX31_RS09605: EX31_RS09605 - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 123,370 to 124,500
_RS09605
Position (kb) 122
123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 121.618 kb on + strand, within EX31_RS09590 at 121.725 kb on + strand, within EX31_RS09590 at 121.737 kb on + strand, within EX31_RS09590 at 121.921 kb on - strand, within EX31_RS09590 at 122.008 kb on + strand, within EX31_RS09590 at 122.008 kb on + strand, within EX31_RS09590 at 122.305 kb on + strand at 122.532 kb on - strand, within EX31_RS09595 at 122.549 kb on - strand at 122.561 kb on + strand at 122.562 kb on - strand at 122.562 kb on - strand at 122.562 kb on - strand at 122.562 kb on - strand at 122.624 kb on + strand at 122.624 kb on + strand at 122.625 kb on - strand at 122.728 kb on + strand, within EX31_RS09600 at 122.812 kb on + strand, within EX31_RS09600 at 122.918 kb on + strand, within EX31_RS09600 at 122.919 kb on - strand, within EX31_RS09600 at 123.114 kb on + strand, within EX31_RS09600 at 123.189 kb on + strand, within EX31_RS09600 at 123.452 kb on + strand at 123.453 kb on - strand at 123.453 kb on - strand at 123.464 kb on - strand at 123.483 kb on + strand, within EX31_RS09605 at 123.496 kb on - strand, within EX31_RS09605 at 123.790 kb on - strand, within EX31_RS09605 at 123.790 kb on - strand, within EX31_RS09605 at 123.790 kb on - strand, within EX31_RS09605 at 123.790 kb on - strand, within EX31_RS09605 at 123.906 kb on + strand, within EX31_RS09605 at 124.189 kb on - strand, within EX31_RS09605 at 124.289 kb on - strand, within EX31_RS09605 at 124.289 kb on - strand, within EX31_RS09605 at 124.330 kb on - strand, within EX31_RS09605
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 121,618 + EX31_RS09590 0.33 -0.2 121,725 + EX31_RS09590 0.47 -1.0 121,737 + EX31_RS09590 0.49 +0.0 121,921 - EX31_RS09590 0.72 -0.1 122,008 + EX31_RS09590 0.83 -2.5 122,008 + EX31_RS09590 0.83 +1.0 122,305 + +0.6 122,532 - EX31_RS09595 0.84 -1.0 122,549 - -1.6 122,561 + +0.9 122,562 - -0.4 122,562 - +0.9 122,562 - -0.3 122,562 - +1.0 122,624 + +0.4 122,624 + +2.3 122,625 - +0.4 122,728 + EX31_RS09600 0.19 +0.3 122,812 + EX31_RS09600 0.30 -1.1 122,918 + EX31_RS09600 0.43 -1.8 122,919 - EX31_RS09600 0.43 +0.3 123,114 + EX31_RS09600 0.68 -2.3 123,189 + EX31_RS09600 0.78 +0.4 123,452 + -0.7 123,453 - -0.4 123,453 - +0.2 123,464 - +1.1 123,483 + EX31_RS09605 0.10 +0.7 123,496 - EX31_RS09605 0.11 -0.5 123,790 - EX31_RS09605 0.37 +1.1 123,790 - EX31_RS09605 0.37 -1.6 123,790 - EX31_RS09605 0.37 -3.6 123,790 - EX31_RS09605 0.37 -1.1 123,906 + EX31_RS09605 0.47 +0.8 124,189 - EX31_RS09605 0.72 +1.0 124,289 - EX31_RS09605 0.81 +1.4 124,289 - EX31_RS09605 0.81 -0.3 124,330 - EX31_RS09605 0.85 -0.5
Or see this region's nucleotide sequence