Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07515 and EX31_RS07520 are separated by 1 nucleotides EX31_RS07520 and EX31_RS07525 overlap by 8 nucleotides EX31_RS07525 and EX31_RS07530 overlap by 8 nucleotides
EX31_RS07515: EX31_RS07515 - D-cysteine desulfhydrase family protein, at 317,896 to 318,894
_RS07515
EX31_RS07520: EX31_RS07520 - ornithine cyclodeaminase, at 318,896 to 319,894
_RS07520
EX31_RS07525: EX31_RS07525 - sulfurtransferase, at 319,887 to 320,756
_RS07525
EX31_RS07530: EX31_RS07530 - ABC transporter ATP-binding protein, at 320,749 to 322,377
_RS07530
Position (kb) 319
320
321 Strain fitness (log2 ratio) -2
-1
0
1 at 319.769 kb on + strand, within EX31_RS07520 at 319.770 kb on - strand, within EX31_RS07520 at 319.770 kb on - strand, within EX31_RS07520 at 319.770 kb on - strand, within EX31_RS07520 at 319.770 kb on - strand, within EX31_RS07520 at 319.883 kb on + strand at 319.884 kb on - strand at 319.926 kb on - strand at 320.053 kb on - strand, within EX31_RS07525 at 320.053 kb on - strand, within EX31_RS07525 at 320.053 kb on - strand, within EX31_RS07525 at 320.058 kb on - strand, within EX31_RS07525 at 320.309 kb on - strand, within EX31_RS07525 at 320.309 kb on - strand, within EX31_RS07525 at 320.613 kb on - strand, within EX31_RS07525 at 320.691 kb on + strand at 320.692 kb on - strand at 320.692 kb on - strand at 320.692 kb on - strand at 320.692 kb on - strand at 320.750 kb on + strand at 320.804 kb on - strand at 320.880 kb on - strand at 321.155 kb on - strand, within EX31_RS07530 at 321.155 kb on - strand, within EX31_RS07530 at 321.244 kb on - strand, within EX31_RS07530 at 321.629 kb on + strand, within EX31_RS07530 at 321.630 kb on - strand, within EX31_RS07530
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 319,769 + EX31_RS07520 0.87 +0.2 319,770 - EX31_RS07520 0.87 -0.6 319,770 - EX31_RS07520 0.87 -0.0 319,770 - EX31_RS07520 0.87 -0.7 319,770 - EX31_RS07520 0.87 -0.8 319,883 + +0.9 319,884 - -0.1 319,926 - +0.1 320,053 - EX31_RS07525 0.19 -0.7 320,053 - EX31_RS07525 0.19 +0.6 320,053 - EX31_RS07525 0.19 -1.3 320,058 - EX31_RS07525 0.20 -0.5 320,309 - EX31_RS07525 0.49 -0.2 320,309 - EX31_RS07525 0.49 -0.9 320,613 - EX31_RS07525 0.83 -1.1 320,691 + +1.4 320,692 - +0.9 320,692 - +0.7 320,692 - -2.2 320,692 - -0.6 320,750 + +0.7 320,804 - -1.4 320,880 - -0.0 321,155 - EX31_RS07530 0.25 +0.7 321,155 - EX31_RS07530 0.25 -0.3 321,244 - EX31_RS07530 0.30 +0.1 321,629 + EX31_RS07530 0.54 -1.7 321,630 - EX31_RS07530 0.54 +0.6
Or see this region's nucleotide sequence