Strain Fitness in Rahnella sp. WP5 around EX31_RS07475

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS07465 and EX31_RS07470 are separated by 25 nucleotidesEX31_RS07470 and EX31_RS07475 are separated by 334 nucleotidesEX31_RS07475 and EX31_RS07480 are separated by 268 nucleotides EX31_RS07465: EX31_RS07465 - LysR family transcriptional regulator, at 304,911 to 305,798 _RS07465 EX31_RS07470: EX31_RS07470 - hypothetical protein, at 305,824 to 306,240 _RS07470 EX31_RS07475: EX31_RS07475 - hypothetical protein, at 306,575 to 307,147 _RS07475 EX31_RS07480: EX31_RS07480 - flavocytochrome c, at 307,416 to 310,193 _RS07480 Position (kb) 306 307 308Strain fitness (log2 ratio) -1 0 1at 305.684 kb on - strand, within EX31_RS07465at 305.686 kb on + strand, within EX31_RS07465at 305.720 kb on + strandat 305.845 kb on - strandat 305.904 kb on + strand, within EX31_RS07470at 306.042 kb on - strand, within EX31_RS07470at 306.170 kb on - strand, within EX31_RS07470at 306.242 kb on + strandat 306.655 kb on + strand, within EX31_RS07475at 306.655 kb on + strand, within EX31_RS07475at 306.821 kb on - strand, within EX31_RS07475at 307.084 kb on - strand, within EX31_RS07475at 307.126 kb on + strandat 307.169 kb on - strandat 307.467 kb on - strandat 307.467 kb on - strandat 307.828 kb on + strand, within EX31_RS07480at 307.829 kb on - strand, within EX31_RS07480at 307.945 kb on + strand, within EX31_RS07480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
remove
305,684 - EX31_RS07465 0.87 -1.5
305,686 + EX31_RS07465 0.87 +1.0
305,720 + -1.5
305,845 - +1.2
305,904 + EX31_RS07470 0.19 +0.4
306,042 - EX31_RS07470 0.52 +0.3
306,170 - EX31_RS07470 0.83 +0.2
306,242 + -0.8
306,655 + EX31_RS07475 0.14 +0.0
306,655 + EX31_RS07475 0.14 -1.1
306,821 - EX31_RS07475 0.43 +0.2
307,084 - EX31_RS07475 0.89 -0.5
307,126 + -0.5
307,169 - +1.3
307,467 - +0.7
307,467 - +0.0
307,828 + EX31_RS07480 0.15 -1.5
307,829 - EX31_RS07480 0.15 +0.2
307,945 + EX31_RS07480 0.19 -1.1

Or see this region's nucleotide sequence