Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07295 and EX31_RS07300 are separated by 94 nucleotides EX31_RS07300 and EX31_RS07305 are separated by 2 nucleotides EX31_RS07305 and EX31_RS07310 are separated by 19 nucleotides
EX31_RS07295: EX31_RS07295 - 3-deoxy-8-phosphooctulonate synthase, at 262,699 to 263,553
_RS07295
EX31_RS07300: EX31_RS07300 - tetratricopeptide repeat-containing protein, at 263,648 to 264,457
_RS07300
EX31_RS07305: EX31_RS07305 - siroheme synthase, at 264,460 to 264,849
_RS07305
EX31_RS07310: EX31_RS07310 - peptide chain release factor N(5)-glutamine methyltransferase, at 264,869 to 265,738
_RS07310
Position (kb) 263
264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 262.691 kb on - strand at 262.691 kb on - strand at 262.701 kb on - strand at 262.701 kb on - strand at 263.639 kb on - strand at 263.660 kb on - strand at 263.660 kb on - strand at 263.785 kb on - strand, within EX31_RS07300 at 263.812 kb on - strand, within EX31_RS07300 at 263.838 kb on - strand, within EX31_RS07300 at 264.008 kb on - strand, within EX31_RS07300 at 264.008 kb on - strand, within EX31_RS07300 at 264.083 kb on - strand, within EX31_RS07300 at 264.083 kb on - strand, within EX31_RS07300 at 264.206 kb on - strand, within EX31_RS07300 at 264.206 kb on - strand, within EX31_RS07300 at 264.345 kb on - strand, within EX31_RS07300 at 264.431 kb on - strand at 264.458 kb on - strand at 264.458 kb on - strand at 264.458 kb on - strand at 264.458 kb on - strand at 264.458 kb on - strand at 264.458 kb on - strand at 264.458 kb on - strand at 264.462 kb on - strand at 264.470 kb on - strand at 264.479 kb on - strand at 264.532 kb on - strand, within EX31_RS07305 at 264.600 kb on - strand, within EX31_RS07305 at 264.600 kb on - strand, within EX31_RS07305 at 264.600 kb on - strand, within EX31_RS07305 at 264.604 kb on - strand, within EX31_RS07305 at 264.604 kb on - strand, within EX31_RS07305 at 264.604 kb on - strand, within EX31_RS07305 at 264.604 kb on - strand, within EX31_RS07305 at 264.604 kb on - strand, within EX31_RS07305 at 264.607 kb on - strand, within EX31_RS07305 at 264.692 kb on - strand, within EX31_RS07305 at 264.692 kb on - strand, within EX31_RS07305 at 264.692 kb on - strand, within EX31_RS07305 at 264.706 kb on - strand, within EX31_RS07305 at 264.751 kb on - strand, within EX31_RS07305 at 264.782 kb on - strand, within EX31_RS07305 at 264.799 kb on - strand, within EX31_RS07305 at 264.811 kb on - strand at 264.811 kb on - strand at 264.843 kb on - strand at 264.843 kb on - strand at 264.843 kb on - strand at 264.843 kb on - strand at 264.843 kb on - strand at 264.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 262,691 - +0.7 262,691 - -0.9 262,701 - -0.7 262,701 - -1.6 263,639 - +0.7 263,660 - -0.3 263,660 - -0.6 263,785 - EX31_RS07300 0.17 +0.8 263,812 - EX31_RS07300 0.20 -0.1 263,838 - EX31_RS07300 0.23 -0.6 264,008 - EX31_RS07300 0.44 -0.5 264,008 - EX31_RS07300 0.44 -0.3 264,083 - EX31_RS07300 0.54 -1.2 264,083 - EX31_RS07300 0.54 -0.1 264,206 - EX31_RS07300 0.69 -0.5 264,206 - EX31_RS07300 0.69 -0.1 264,345 - EX31_RS07300 0.86 -1.1 264,431 - -0.3 264,458 - +0.5 264,458 - +0.1 264,458 - -1.2 264,458 - +0.8 264,458 - +0.0 264,458 - -0.4 264,458 - +0.6 264,462 - -0.8 264,470 - -0.8 264,479 - +0.6 264,532 - EX31_RS07305 0.18 -0.7 264,600 - EX31_RS07305 0.36 -0.1 264,600 - EX31_RS07305 0.36 -0.0 264,600 - EX31_RS07305 0.36 +1.6 264,604 - EX31_RS07305 0.37 -3.0 264,604 - EX31_RS07305 0.37 -0.8 264,604 - EX31_RS07305 0.37 +0.3 264,604 - EX31_RS07305 0.37 -0.3 264,604 - EX31_RS07305 0.37 +1.0 264,607 - EX31_RS07305 0.38 +0.0 264,692 - EX31_RS07305 0.59 -0.4 264,692 - EX31_RS07305 0.59 +0.5 264,692 - EX31_RS07305 0.59 -0.7 264,706 - EX31_RS07305 0.63 +0.4 264,751 - EX31_RS07305 0.75 +1.0 264,782 - EX31_RS07305 0.83 -0.3 264,799 - EX31_RS07305 0.87 +0.1 264,811 - -0.1 264,811 - +0.6 264,843 - -0.4 264,843 - -0.8 264,843 - -0.2 264,843 - -0.4 264,843 - -1.3 264,843 - -0.5
Or see this region's nucleotide sequence