Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07280 and EX31_RS07285 are separated by 883 nucleotides EX31_RS07285 and EX31_RS07290 are separated by 421 nucleotides
EX31_RS07280: EX31_RS07280 - cytochrome c, at 257,633 to 258,955
_RS07280
EX31_RS07285: EX31_RS07285 - GNAT family N-acetyltransferase, at 259,839 to 260,546
_RS07285
EX31_RS07290: EX31_RS07290 - C4-dicarboxylic acid transporter DauA, at 260,968 to 262,635
_RS07290
Position (kb) 259
260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 258.901 kb on + strand at 259.018 kb on + strand at 259.022 kb on + strand at 259.078 kb on - strand at 259.205 kb on - strand at 259.837 kb on + strand at 259.919 kb on + strand, within EX31_RS07285 at 259.921 kb on + strand, within EX31_RS07285 at 260.022 kb on + strand, within EX31_RS07285 at 260.067 kb on + strand, within EX31_RS07285 at 260.068 kb on - strand, within EX31_RS07285 at 260.117 kb on + strand, within EX31_RS07285 at 260.248 kb on + strand, within EX31_RS07285 at 260.265 kb on + strand, within EX31_RS07285 at 260.265 kb on + strand, within EX31_RS07285 at 260.265 kb on + strand, within EX31_RS07285 at 260.265 kb on + strand, within EX31_RS07285 at 260.266 kb on - strand, within EX31_RS07285 at 260.514 kb on + strand at 260.551 kb on + strand at 260.590 kb on + strand at 260.590 kb on + strand at 260.590 kb on + strand at 260.670 kb on - strand at 260.674 kb on - strand at 260.686 kb on + strand at 260.687 kb on - strand at 260.701 kb on + strand at 260.702 kb on - strand at 260.743 kb on + strand at 260.743 kb on + strand at 260.743 kb on + strand at 260.743 kb on + strand at 260.752 kb on + strand at 260.752 kb on + strand at 260.753 kb on - strand at 260.821 kb on + strand at 260.821 kb on + strand at 260.821 kb on + strand at 260.821 kb on + strand at 260.822 kb on - strand at 260.822 kb on - strand at 260.826 kb on + strand at 260.826 kb on + strand at 260.827 kb on - strand at 260.828 kb on + strand at 260.829 kb on - strand at 260.868 kb on + strand at 260.868 kb on + strand at 260.868 kb on + strand at 260.898 kb on + strand at 260.936 kb on + strand at 260.960 kb on + strand at 260.961 kb on - strand at 260.967 kb on + strand at 260.968 kb on - strand at 260.973 kb on + strand at 261.053 kb on + strand at 261.154 kb on + strand, within EX31_RS07290 at 261.155 kb on - strand, within EX31_RS07290 at 261.156 kb on + strand, within EX31_RS07290 at 261.156 kb on + strand, within EX31_RS07290 at 261.156 kb on + strand, within EX31_RS07290 at 261.157 kb on - strand, within EX31_RS07290 at 261.157 kb on - strand, within EX31_RS07290 at 261.157 kb on - strand, within EX31_RS07290 at 261.241 kb on - strand, within EX31_RS07290 at 261.309 kb on + strand, within EX31_RS07290 at 261.310 kb on - strand, within EX31_RS07290 at 261.355 kb on + strand, within EX31_RS07290 at 261.360 kb on - strand, within EX31_RS07290 at 261.467 kb on - strand, within EX31_RS07290 at 261.467 kb on - strand, within EX31_RS07290 at 261.474 kb on + strand, within EX31_RS07290
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 258,901 + +1.0 259,018 + +0.9 259,022 + -0.4 259,078 - -0.3 259,205 - +0.3 259,837 + +1.3 259,919 + EX31_RS07285 0.11 -1.5 259,921 + EX31_RS07285 0.12 +1.2 260,022 + EX31_RS07285 0.26 -0.4 260,067 + EX31_RS07285 0.32 -0.3 260,068 - EX31_RS07285 0.32 -1.3 260,117 + EX31_RS07285 0.39 -0.1 260,248 + EX31_RS07285 0.58 -2.5 260,265 + EX31_RS07285 0.60 -0.8 260,265 + EX31_RS07285 0.60 -0.4 260,265 + EX31_RS07285 0.60 +0.6 260,265 + EX31_RS07285 0.60 -1.0 260,266 - EX31_RS07285 0.60 -1.4 260,514 + -0.8 260,551 + +0.4 260,590 + +0.6 260,590 + -0.6 260,590 + -0.8 260,670 - -0.4 260,674 - +1.1 260,686 + +0.2 260,687 - +0.3 260,701 + +1.7 260,702 - +0.4 260,743 + -2.8 260,743 + -0.2 260,743 + +0.0 260,743 + +0.5 260,752 + +0.0 260,752 + +0.1 260,753 - +0.1 260,821 + -0.7 260,821 + -0.4 260,821 + -2.3 260,821 + -0.1 260,822 - -0.3 260,822 - +0.6 260,826 + -0.4 260,826 + -0.5 260,827 - -1.2 260,828 + +0.2 260,829 - -0.3 260,868 + -1.0 260,868 + -0.3 260,868 + -0.2 260,898 + +0.8 260,936 + +0.5 260,960 + +0.2 260,961 - -2.4 260,967 + -0.1 260,968 - +0.9 260,973 + -2.2 261,053 + -0.0 261,154 + EX31_RS07290 0.11 -0.7 261,155 - EX31_RS07290 0.11 +0.9 261,156 + EX31_RS07290 0.11 -0.1 261,156 + EX31_RS07290 0.11 -0.2 261,156 + EX31_RS07290 0.11 -1.5 261,157 - EX31_RS07290 0.11 -0.9 261,157 - EX31_RS07290 0.11 -0.2 261,157 - EX31_RS07290 0.11 +1.0 261,241 - EX31_RS07290 0.16 -1.2 261,309 + EX31_RS07290 0.20 -2.0 261,310 - EX31_RS07290 0.21 -0.3 261,355 + EX31_RS07290 0.23 +0.1 261,360 - EX31_RS07290 0.24 -0.7 261,467 - EX31_RS07290 0.30 +0.6 261,467 - EX31_RS07290 0.30 -0.6 261,474 + EX31_RS07290 0.30 -1.2
Or see this region's nucleotide sequence