Strain Fitness in Rahnella sp. WP5 around EX31_RS07165

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07160 and EX31_RS07165 are separated by 192 nucleotidesEX31_RS07165 and EX31_RS07170 are separated by 212 nucleotides EX31_RS07160: EX31_RS07160 - HTH-type transcriptional regulator Cbl, at 227,354 to 228,307 _RS07160 EX31_RS07165: EX31_RS07165 - 2-hydroxyacid dehydrogenase, at 228,500 to 229,444 _RS07165 EX31_RS07170: EX31_RS07170 - glycogen debranching protein GlgX, at 229,657 to 231,939 _RS07170 Position (kb) 228 229 230Strain fitness (log2 ratio) -2 -1 0 1 2at 227.504 kb on - strand, within EX31_RS07160at 227.516 kb on + strand, within EX31_RS07160at 227.618 kb on - strand, within EX31_RS07160at 227.618 kb on - strand, within EX31_RS07160at 227.718 kb on + strand, within EX31_RS07160at 227.718 kb on + strand, within EX31_RS07160at 227.719 kb on - strand, within EX31_RS07160at 227.719 kb on - strand, within EX31_RS07160at 227.820 kb on + strand, within EX31_RS07160at 227.953 kb on - strand, within EX31_RS07160at 228.165 kb on - strand, within EX31_RS07160at 228.243 kb on - strandat 228.339 kb on + strandat 228.386 kb on - strandat 228.389 kb on + strandat 228.574 kb on + strandat 228.575 kb on - strandat 228.760 kb on + strand, within EX31_RS07165at 228.796 kb on + strand, within EX31_RS07165at 228.944 kb on - strand, within EX31_RS07165at 229.033 kb on + strand, within EX31_RS07165at 229.067 kb on + strand, within EX31_RS07165at 229.067 kb on + strand, within EX31_RS07165at 229.068 kb on - strand, within EX31_RS07165at 229.123 kb on + strand, within EX31_RS07165at 229.124 kb on - strand, within EX31_RS07165at 229.124 kb on - strand, within EX31_RS07165at 229.144 kb on + strand, within EX31_RS07165at 229.145 kb on - strand, within EX31_RS07165at 229.174 kb on + strand, within EX31_RS07165at 229.204 kb on + strand, within EX31_RS07165at 229.205 kb on - strand, within EX31_RS07165at 229.205 kb on - strand, within EX31_RS07165at 229.205 kb on - strand, within EX31_RS07165at 229.275 kb on - strand, within EX31_RS07165at 229.295 kb on + strand, within EX31_RS07165at 229.372 kb on + strandat 229.372 kb on + strandat 229.372 kb on + strandat 229.373 kb on - strandat 229.474 kb on - strandat 229.477 kb on + strandat 229.477 kb on + strandat 229.478 kb on - strandat 229.557 kb on - strandat 229.743 kb on + strandat 229.751 kb on + strandat 229.751 kb on + strandat 229.770 kb on + strandat 229.771 kb on - strandat 229.922 kb on + strand, within EX31_RS07170at 229.922 kb on + strand, within EX31_RS07170at 229.922 kb on + strand, within EX31_RS07170at 229.923 kb on - strand, within EX31_RS07170at 229.923 kb on - strand, within EX31_RS07170at 229.957 kb on + strand, within EX31_RS07170at 229.957 kb on + strand, within EX31_RS07170at 229.958 kb on - strand, within EX31_RS07170at 229.958 kb on - strand, within EX31_RS07170at 229.958 kb on - strand, within EX31_RS07170at 229.983 kb on + strand, within EX31_RS07170at 229.984 kb on - strand, within EX31_RS07170at 230.005 kb on + strand, within EX31_RS07170at 230.035 kb on + strand, within EX31_RS07170at 230.035 kb on + strand, within EX31_RS07170at 230.035 kb on + strand, within EX31_RS07170at 230.035 kb on + strand, within EX31_RS07170at 230.036 kb on - strand, within EX31_RS07170at 230.165 kb on - strand, within EX31_RS07170at 230.283 kb on + strand, within EX31_RS07170at 230.332 kb on - strand, within EX31_RS07170at 230.408 kb on - strand, within EX31_RS07170at 230.408 kb on - strand, within EX31_RS07170at 230.408 kb on - strand, within EX31_RS07170at 230.408 kb on - strand, within EX31_RS07170

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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227,504 - EX31_RS07160 0.16 -0.2
227,516 + EX31_RS07160 0.17 +0.2
227,618 - EX31_RS07160 0.28 +0.3
227,618 - EX31_RS07160 0.28 -0.5
227,718 + EX31_RS07160 0.38 -0.9
227,718 + EX31_RS07160 0.38 -0.3
227,719 - EX31_RS07160 0.38 +0.3
227,719 - EX31_RS07160 0.38 -1.0
227,820 + EX31_RS07160 0.49 +0.8
227,953 - EX31_RS07160 0.63 -0.3
228,165 - EX31_RS07160 0.85 -1.1
228,243 - -0.1
228,339 + -0.2
228,386 - +0.9
228,389 + -0.5
228,574 + -0.4
228,575 - +0.5
228,760 + EX31_RS07165 0.28 -1.0
228,796 + EX31_RS07165 0.31 +0.2
228,944 - EX31_RS07165 0.47 -0.1
229,033 + EX31_RS07165 0.56 -1.8
229,067 + EX31_RS07165 0.60 -0.2
229,067 + EX31_RS07165 0.60 +0.4
229,068 - EX31_RS07165 0.60 +0.0
229,123 + EX31_RS07165 0.66 -1.1
229,124 - EX31_RS07165 0.66 -2.2
229,124 - EX31_RS07165 0.66 -0.1
229,144 + EX31_RS07165 0.68 -0.2
229,145 - EX31_RS07165 0.68 +0.1
229,174 + EX31_RS07165 0.71 -1.6
229,204 + EX31_RS07165 0.74 -0.9
229,205 - EX31_RS07165 0.75 -2.1
229,205 - EX31_RS07165 0.75 -0.2
229,205 - EX31_RS07165 0.75 -2.1
229,275 - EX31_RS07165 0.82 -1.2
229,295 + EX31_RS07165 0.84 -1.4
229,372 + -0.9
229,372 + +0.3
229,372 + +1.0
229,373 - -0.6
229,474 - -0.1
229,477 + +0.0
229,477 + +0.7
229,478 - -2.5
229,557 - +1.8
229,743 + -0.3
229,751 + +0.6
229,751 + -0.1
229,770 + +0.0
229,771 - -0.2
229,922 + EX31_RS07170 0.12 +0.3
229,922 + EX31_RS07170 0.12 -0.1
229,922 + EX31_RS07170 0.12 -1.0
229,923 - EX31_RS07170 0.12 +1.6
229,923 - EX31_RS07170 0.12 -0.6
229,957 + EX31_RS07170 0.13 +0.6
229,957 + EX31_RS07170 0.13 -0.5
229,958 - EX31_RS07170 0.13 +0.1
229,958 - EX31_RS07170 0.13 -0.3
229,958 - EX31_RS07170 0.13 -1.0
229,983 + EX31_RS07170 0.14 -2.6
229,984 - EX31_RS07170 0.14 -0.5
230,005 + EX31_RS07170 0.15 +0.0
230,035 + EX31_RS07170 0.17 -0.4
230,035 + EX31_RS07170 0.17 +0.0
230,035 + EX31_RS07170 0.17 -1.2
230,035 + EX31_RS07170 0.17 +1.6
230,036 - EX31_RS07170 0.17 -0.7
230,165 - EX31_RS07170 0.22 -0.3
230,283 + EX31_RS07170 0.27 +0.6
230,332 - EX31_RS07170 0.30 +0.1
230,408 - EX31_RS07170 0.33 -2.3
230,408 - EX31_RS07170 0.33 +0.1
230,408 - EX31_RS07170 0.33 -0.1
230,408 - EX31_RS07170 0.33 -0.7

Or see this region's nucleotide sequence