Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07070 and EX31_RS07075 are separated by 126 nucleotides EX31_RS07075 and EX31_RS07080 are separated by 127 nucleotides
EX31_RS07070: EX31_RS07070 - aldo/keto reductase, at 207,231 to 208,286
_RS07070
EX31_RS07075: EX31_RS07075 - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 208,413 to 209,162
_RS07075
EX31_RS07080: EX31_RS07080 - NCS2 family permease, at 209,290 to 210,585
_RS07080
Position (kb) 208
209
210 Strain fitness (log2 ratio) -2
-1
0
1 at 207.542 kb on + strand, within EX31_RS07070 at 207.543 kb on - strand, within EX31_RS07070 at 207.600 kb on + strand, within EX31_RS07070 at 207.600 kb on + strand, within EX31_RS07070 at 207.601 kb on - strand, within EX31_RS07070 at 207.759 kb on - strand, within EX31_RS07070 at 207.759 kb on - strand, within EX31_RS07070 at 207.786 kb on + strand, within EX31_RS07070 at 207.787 kb on - strand, within EX31_RS07070 at 207.813 kb on + strand, within EX31_RS07070 at 208.172 kb on + strand, within EX31_RS07070 at 208.284 kb on + strand at 208.301 kb on + strand at 208.301 kb on + strand at 208.301 kb on + strand at 208.354 kb on + strand at 208.354 kb on + strand at 208.368 kb on - strand at 208.418 kb on + strand at 208.557 kb on + strand, within EX31_RS07075 at 208.557 kb on + strand, within EX31_RS07075 at 208.592 kb on + strand, within EX31_RS07075 at 208.632 kb on - strand, within EX31_RS07075 at 208.746 kb on + strand, within EX31_RS07075 at 208.746 kb on + strand, within EX31_RS07075 at 208.746 kb on + strand, within EX31_RS07075 at 208.746 kb on + strand, within EX31_RS07075 at 208.747 kb on - strand, within EX31_RS07075 at 208.747 kb on - strand, within EX31_RS07075 at 209.013 kb on + strand, within EX31_RS07075 at 209.018 kb on + strand, within EX31_RS07075 at 209.163 kb on + strand at 209.163 kb on + strand at 209.163 kb on + strand at 209.164 kb on - strand at 209.164 kb on - strand at 209.211 kb on - strand at 209.289 kb on - strand at 209.289 kb on - strand at 209.289 kb on - strand at 209.341 kb on - strand at 209.432 kb on + strand, within EX31_RS07080 at 209.432 kb on + strand, within EX31_RS07080 at 209.433 kb on - strand, within EX31_RS07080 at 209.678 kb on + strand, within EX31_RS07080 at 209.678 kb on + strand, within EX31_RS07080 at 209.679 kb on - strand, within EX31_RS07080 at 209.679 kb on - strand, within EX31_RS07080 at 209.679 kb on - strand, within EX31_RS07080
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 207,542 + EX31_RS07070 0.29 -1.0 207,543 - EX31_RS07070 0.30 -0.1 207,600 + EX31_RS07070 0.35 +0.2 207,600 + EX31_RS07070 0.35 +0.9 207,601 - EX31_RS07070 0.35 +0.5 207,759 - EX31_RS07070 0.50 +0.8 207,759 - EX31_RS07070 0.50 -0.9 207,786 + EX31_RS07070 0.53 -1.3 207,787 - EX31_RS07070 0.53 -0.9 207,813 + EX31_RS07070 0.55 -0.6 208,172 + EX31_RS07070 0.89 -1.1 208,284 + +0.4 208,301 + +0.1 208,301 + -1.1 208,301 + +0.9 208,354 + -1.2 208,354 + +1.0 208,368 - +0.6 208,418 + -0.9 208,557 + EX31_RS07075 0.19 -1.3 208,557 + EX31_RS07075 0.19 -1.6 208,592 + EX31_RS07075 0.24 +0.1 208,632 - EX31_RS07075 0.29 -0.8 208,746 + EX31_RS07075 0.44 +0.2 208,746 + EX31_RS07075 0.44 -0.3 208,746 + EX31_RS07075 0.44 +0.1 208,746 + EX31_RS07075 0.44 +0.4 208,747 - EX31_RS07075 0.45 -1.1 208,747 - EX31_RS07075 0.45 -0.3 209,013 + EX31_RS07075 0.80 -1.5 209,018 + EX31_RS07075 0.81 -0.9 209,163 + -1.1 209,163 + -0.9 209,163 + +0.2 209,164 - -1.2 209,164 - +1.7 209,211 - -0.4 209,289 - -0.5 209,289 - -1.8 209,289 - -0.8 209,341 - +0.1 209,432 + EX31_RS07080 0.11 -0.4 209,432 + EX31_RS07080 0.11 +0.1 209,433 - EX31_RS07080 0.11 +1.1 209,678 + EX31_RS07080 0.30 +0.6 209,678 + EX31_RS07080 0.30 +0.3 209,679 - EX31_RS07080 0.30 -0.5 209,679 - EX31_RS07080 0.30 +0.9 209,679 - EX31_RS07080 0.30 -0.1
Or see this region's nucleotide sequence