Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06980 and EX31_RS06985 overlap by 14 nucleotides EX31_RS06985 and EX31_RS06990 are separated by 50 nucleotides EX31_RS06990 and EX31_RS06995 are separated by 265 nucleotides EX31_RS06995 and EX31_RS07000 are separated by 38 nucleotides
EX31_RS06980: EX31_RS06980 - iron ABC transporter ATP-binding protein FetA, at 185,741 to 186,412
_RS06980
EX31_RS06985: EX31_RS06985 - iron export ABC transporter permease subunit FetB, at 186,399 to 187,172
_RS06985
EX31_RS06990: EX31_RS06990 - GntR family transcriptional regulator, at 187,223 to 187,918
_RS06990
EX31_RS06995: EX31_RS06995 - hypothetical protein, at 188,184 to 188,792
_RS06995
EX31_RS07000: EX31_RS07000 - iron ABC transporter permease, at 188,831 to 190,561
_RS07000
Position (kb) 187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 186.256 kb on + strand, within EX31_RS06980 at 186.410 kb on + strand at 186.411 kb on - strand at 186.413 kb on + strand at 186.413 kb on + strand at 186.413 kb on + strand at 186.413 kb on + strand at 186.532 kb on + strand, within EX31_RS06985 at 186.657 kb on - strand, within EX31_RS06985 at 186.657 kb on - strand, within EX31_RS06985 at 186.675 kb on - strand, within EX31_RS06985 at 186.822 kb on + strand, within EX31_RS06985 at 186.834 kb on - strand, within EX31_RS06985 at 186.955 kb on + strand, within EX31_RS06985 at 187.047 kb on + strand, within EX31_RS06985 at 187.101 kb on - strand at 187.101 kb on - strand at 187.111 kb on - strand at 187.131 kb on + strand at 187.132 kb on - strand at 187.173 kb on + strand at 187.174 kb on - strand at 187.177 kb on + strand at 187.225 kb on - strand at 187.227 kb on - strand at 187.337 kb on - strand, within EX31_RS06990 at 187.583 kb on - strand, within EX31_RS06990 at 187.583 kb on - strand, within EX31_RS06990 at 187.583 kb on - strand, within EX31_RS06990 at 187.585 kb on + strand, within EX31_RS06990 at 187.586 kb on - strand, within EX31_RS06990 at 187.715 kb on - strand, within EX31_RS06990 at 187.715 kb on - strand, within EX31_RS06990 at 187.755 kb on - strand, within EX31_RS06990 at 187.913 kb on - strand at 187.961 kb on - strand at 187.990 kb on - strand at 187.990 kb on - strand at 188.039 kb on + strand at 188.247 kb on - strand, within EX31_RS06995 at 188.278 kb on + strand, within EX31_RS06995 at 188.279 kb on - strand, within EX31_RS06995 at 188.283 kb on - strand, within EX31_RS06995 at 188.396 kb on + strand, within EX31_RS06995 at 188.396 kb on + strand, within EX31_RS06995 at 188.396 kb on + strand, within EX31_RS06995 at 188.397 kb on - strand, within EX31_RS06995 at 188.397 kb on - strand, within EX31_RS06995 at 188.432 kb on + strand, within EX31_RS06995 at 188.484 kb on + strand, within EX31_RS06995 at 188.484 kb on + strand, within EX31_RS06995 at 188.485 kb on - strand, within EX31_RS06995 at 188.485 kb on - strand, within EX31_RS06995 at 188.509 kb on - strand, within EX31_RS06995 at 188.509 kb on - strand, within EX31_RS06995 at 188.509 kb on - strand, within EX31_RS06995 at 188.589 kb on + strand, within EX31_RS06995 at 188.589 kb on + strand, within EX31_RS06995 at 188.589 kb on + strand, within EX31_RS06995 at 188.589 kb on + strand, within EX31_RS06995 at 188.590 kb on - strand, within EX31_RS06995 at 188.591 kb on + strand, within EX31_RS06995 at 188.591 kb on + strand, within EX31_RS06995 at 188.645 kb on + strand, within EX31_RS06995 at 188.645 kb on + strand, within EX31_RS06995 at 188.646 kb on - strand, within EX31_RS06995 at 188.662 kb on + strand, within EX31_RS06995 at 188.662 kb on + strand, within EX31_RS06995 at 188.663 kb on - strand, within EX31_RS06995 at 188.676 kb on + strand, within EX31_RS06995 at 188.680 kb on + strand, within EX31_RS06995 at 188.680 kb on + strand, within EX31_RS06995 at 188.849 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 186,256 + EX31_RS06980 0.77 +1.2 186,410 + -2.8 186,411 - +0.0 186,413 + -0.4 186,413 + +0.7 186,413 + -0.5 186,413 + +0.6 186,532 + EX31_RS06985 0.17 +1.1 186,657 - EX31_RS06985 0.33 +0.7 186,657 - EX31_RS06985 0.33 +0.2 186,675 - EX31_RS06985 0.36 -1.1 186,822 + EX31_RS06985 0.55 -0.0 186,834 - EX31_RS06985 0.56 +0.4 186,955 + EX31_RS06985 0.72 -1.5 187,047 + EX31_RS06985 0.84 -0.5 187,101 - +1.3 187,101 - +0.3 187,111 - +1.6 187,131 + -0.2 187,132 - +0.0 187,173 + -2.5 187,174 - +1.8 187,177 + +0.7 187,225 - -2.5 187,227 - -0.7 187,337 - EX31_RS06990 0.16 -1.8 187,583 - EX31_RS06990 0.52 -0.5 187,583 - EX31_RS06990 0.52 -0.3 187,583 - EX31_RS06990 0.52 +0.0 187,585 + EX31_RS06990 0.52 +0.5 187,586 - EX31_RS06990 0.52 -0.5 187,715 - EX31_RS06990 0.71 -1.6 187,715 - EX31_RS06990 0.71 -1.9 187,755 - EX31_RS06990 0.76 +0.4 187,913 - +0.1 187,961 - -0.3 187,990 - +0.5 187,990 - +0.0 188,039 + +1.0 188,247 - EX31_RS06995 0.10 +0.8 188,278 + EX31_RS06995 0.15 -0.2 188,279 - EX31_RS06995 0.16 +0.6 188,283 - EX31_RS06995 0.16 -0.2 188,396 + EX31_RS06995 0.35 +0.2 188,396 + EX31_RS06995 0.35 +0.4 188,396 + EX31_RS06995 0.35 -1.0 188,397 - EX31_RS06995 0.35 -0.6 188,397 - EX31_RS06995 0.35 -0.3 188,432 + EX31_RS06995 0.41 -0.5 188,484 + EX31_RS06995 0.49 -0.1 188,484 + EX31_RS06995 0.49 +1.0 188,485 - EX31_RS06995 0.49 -2.1 188,485 - EX31_RS06995 0.49 +0.7 188,509 - EX31_RS06995 0.53 -0.1 188,509 - EX31_RS06995 0.53 -0.1 188,509 - EX31_RS06995 0.53 +1.1 188,589 + EX31_RS06995 0.67 -2.5 188,589 + EX31_RS06995 0.67 -1.0 188,589 + EX31_RS06995 0.67 +0.1 188,589 + EX31_RS06995 0.67 -1.1 188,590 - EX31_RS06995 0.67 -1.1 188,591 + EX31_RS06995 0.67 -2.3 188,591 + EX31_RS06995 0.67 +0.7 188,645 + EX31_RS06995 0.76 -1.2 188,645 + EX31_RS06995 0.76 -0.6 188,646 - EX31_RS06995 0.76 +1.6 188,662 + EX31_RS06995 0.78 -0.1 188,662 + EX31_RS06995 0.78 -1.0 188,663 - EX31_RS06995 0.79 -2.1 188,676 + EX31_RS06995 0.81 +1.0 188,680 + EX31_RS06995 0.81 +1.8 188,680 + EX31_RS06995 0.81 -0.1 188,849 + -0.5
Or see this region's nucleotide sequence