Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06785 and EX31_RS06790 are separated by 2 nucleotides EX31_RS06790 and EX31_RS06795 are separated by 16 nucleotides EX31_RS06795 and EX31_RS06800 overlap by 1 nucleotides
EX31_RS06785: EX31_RS06785 - hypothetical protein, at 143,906 to 145,228
_RS06785
EX31_RS06790: EX31_RS06790 - histidinol dehydrogenase, at 145,231 to 146,571
_RS06790
EX31_RS06795: EX31_RS06795 - ABC transporter ATP-binding protein, at 146,588 to 147,358
_RS06795
EX31_RS06800: EX31_RS06800 - ABC transporter permease, at 147,358 to 148,167
_RS06800
Position (kb) 145
146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 144.255 kb on - strand, within EX31_RS06785 at 144.262 kb on - strand, within EX31_RS06785 at 144.288 kb on + strand, within EX31_RS06785 at 144.344 kb on + strand, within EX31_RS06785 at 144.513 kb on - strand, within EX31_RS06785 at 144.534 kb on + strand, within EX31_RS06785 at 144.535 kb on - strand, within EX31_RS06785 at 144.621 kb on + strand, within EX31_RS06785 at 144.883 kb on - strand, within EX31_RS06785 at 144.919 kb on - strand, within EX31_RS06785 at 144.969 kb on + strand, within EX31_RS06785 at 144.969 kb on + strand, within EX31_RS06785 at 144.969 kb on + strand, within EX31_RS06785 at 144.970 kb on - strand, within EX31_RS06785 at 144.970 kb on - strand, within EX31_RS06785 at 144.970 kb on - strand, within EX31_RS06785 at 144.970 kb on - strand, within EX31_RS06785 at 144.970 kb on - strand, within EX31_RS06785 at 144.970 kb on - strand, within EX31_RS06785 at 144.970 kb on - strand, within EX31_RS06785 at 144.972 kb on + strand, within EX31_RS06785 at 144.973 kb on - strand, within EX31_RS06785 at 144.988 kb on + strand, within EX31_RS06785 at 145.046 kb on + strand, within EX31_RS06785 at 145.219 kb on + strand at 145.264 kb on + strand at 145.304 kb on + strand at 145.304 kb on + strand at 145.304 kb on + strand at 145.305 kb on - strand at 145.305 kb on - strand at 145.305 kb on - strand at 145.305 kb on - strand at 145.361 kb on + strand at 145.361 kb on + strand at 145.362 kb on - strand at 145.362 kb on - strand at 145.362 kb on - strand at 145.385 kb on + strand, within EX31_RS06790 at 145.484 kb on + strand, within EX31_RS06790 at 145.484 kb on + strand, within EX31_RS06790 at 145.642 kb on + strand, within EX31_RS06790 at 145.642 kb on + strand, within EX31_RS06790 at 145.645 kb on + strand, within EX31_RS06790 at 146.000 kb on + strand, within EX31_RS06790 at 146.000 kb on + strand, within EX31_RS06790 at 146.169 kb on - strand, within EX31_RS06790 at 146.169 kb on - strand, within EX31_RS06790 at 146.308 kb on + strand, within EX31_RS06790 at 146.350 kb on - strand, within EX31_RS06790 at 146.370 kb on + strand, within EX31_RS06790 at 146.370 kb on + strand, within EX31_RS06790 at 146.370 kb on + strand, within EX31_RS06790 at 146.760 kb on + strand, within EX31_RS06795 at 146.761 kb on - strand, within EX31_RS06795 at 146.761 kb on - strand, within EX31_RS06795 at 146.763 kb on - strand, within EX31_RS06795 at 146.831 kb on + strand, within EX31_RS06795 at 147.105 kb on + strand, within EX31_RS06795 at 147.106 kb on - strand, within EX31_RS06795 at 147.212 kb on + strand, within EX31_RS06795 at 147.213 kb on - strand, within EX31_RS06795 at 147.213 kb on - strand, within EX31_RS06795 at 147.213 kb on - strand, within EX31_RS06795 at 147.435 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 144,255 - EX31_RS06785 0.26 +0.1 144,262 - EX31_RS06785 0.27 -0.1 144,288 + EX31_RS06785 0.29 -1.7 144,344 + EX31_RS06785 0.33 +0.9 144,513 - EX31_RS06785 0.46 +0.4 144,534 + EX31_RS06785 0.47 -1.5 144,535 - EX31_RS06785 0.48 -1.4 144,621 + EX31_RS06785 0.54 +0.1 144,883 - EX31_RS06785 0.74 -0.1 144,919 - EX31_RS06785 0.77 -0.2 144,969 + EX31_RS06785 0.80 +0.7 144,969 + EX31_RS06785 0.80 +0.2 144,969 + EX31_RS06785 0.80 +1.3 144,970 - EX31_RS06785 0.80 +1.4 144,970 - EX31_RS06785 0.80 +0.5 144,970 - EX31_RS06785 0.80 -3.2 144,970 - EX31_RS06785 0.80 +1.2 144,970 - EX31_RS06785 0.80 +0.2 144,970 - EX31_RS06785 0.80 +1.9 144,970 - EX31_RS06785 0.80 -1.1 144,972 + EX31_RS06785 0.81 -1.3 144,973 - EX31_RS06785 0.81 -1.0 144,988 + EX31_RS06785 0.82 +0.5 145,046 + EX31_RS06785 0.86 -0.0 145,219 + -0.7 145,264 + +0.8 145,304 + -0.6 145,304 + -1.7 145,304 + -0.1 145,305 - -0.0 145,305 - -1.5 145,305 - -1.3 145,305 - -0.2 145,361 + +0.3 145,361 + -0.4 145,362 - -0.5 145,362 - -0.6 145,362 - +0.5 145,385 + EX31_RS06790 0.11 +0.8 145,484 + EX31_RS06790 0.19 -1.0 145,484 + EX31_RS06790 0.19 +0.1 145,642 + EX31_RS06790 0.31 -0.9 145,642 + EX31_RS06790 0.31 +1.6 145,645 + EX31_RS06790 0.31 -0.9 146,000 + EX31_RS06790 0.57 -1.6 146,000 + EX31_RS06790 0.57 -0.8 146,169 - EX31_RS06790 0.70 +0.5 146,169 - EX31_RS06790 0.70 -1.5 146,308 + EX31_RS06790 0.80 -1.3 146,350 - EX31_RS06790 0.83 +0.4 146,370 + EX31_RS06790 0.85 -0.6 146,370 + EX31_RS06790 0.85 -0.8 146,370 + EX31_RS06790 0.85 +0.0 146,760 + EX31_RS06795 0.22 +0.6 146,761 - EX31_RS06795 0.22 +0.5 146,761 - EX31_RS06795 0.22 +0.5 146,763 - EX31_RS06795 0.23 -0.1 146,831 + EX31_RS06795 0.32 +1.3 147,105 + EX31_RS06795 0.67 -0.8 147,106 - EX31_RS06795 0.67 +0.2 147,212 + EX31_RS06795 0.81 -1.5 147,213 - EX31_RS06795 0.81 -2.5 147,213 - EX31_RS06795 0.81 -0.8 147,213 - EX31_RS06795 0.81 +0.6 147,435 + +0.6
Or see this region's nucleotide sequence