Strain Fitness in Rahnella sp. WP5 around EX31_RS06720

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06715 and EX31_RS06720 overlap by 4 nucleotidesEX31_RS06720 and EX31_RS06725 are separated by 170 nucleotides EX31_RS06715: EX31_RS06715 - N-formylglutamate deformylase, at 127,625 to 128,461 _RS06715 EX31_RS06720: EX31_RS06720 - imidazolonepropionase, at 128,458 to 129,720 _RS06720 EX31_RS06725: EX31_RS06725 - histidine utilization repressor, at 129,891 to 130,709 _RS06725 Position (kb) 128 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 127.564 kb on - strandat 127.642 kb on + strandat 127.645 kb on - strandat 127.726 kb on - strand, within EX31_RS06715at 127.752 kb on + strand, within EX31_RS06715at 127.752 kb on + strand, within EX31_RS06715at 127.752 kb on + strand, within EX31_RS06715at 127.753 kb on - strand, within EX31_RS06715at 127.753 kb on - strand, within EX31_RS06715at 127.753 kb on - strand, within EX31_RS06715at 127.753 kb on - strand, within EX31_RS06715at 127.822 kb on + strand, within EX31_RS06715at 127.823 kb on - strand, within EX31_RS06715at 127.824 kb on + strand, within EX31_RS06715at 127.824 kb on + strand, within EX31_RS06715at 127.835 kb on - strand, within EX31_RS06715at 127.846 kb on + strand, within EX31_RS06715at 127.846 kb on + strand, within EX31_RS06715at 128.154 kb on - strand, within EX31_RS06715at 128.154 kb on - strand, within EX31_RS06715at 128.167 kb on - strand, within EX31_RS06715at 128.188 kb on + strand, within EX31_RS06715at 128.190 kb on + strand, within EX31_RS06715at 128.191 kb on - strand, within EX31_RS06715at 128.387 kb on - strandat 128.407 kb on + strandat 128.408 kb on - strandat 128.480 kb on - strandat 128.480 kb on - strandat 128.563 kb on + strandat 128.564 kb on - strandat 128.682 kb on + strand, within EX31_RS06720at 128.682 kb on + strand, within EX31_RS06720at 128.682 kb on + strand, within EX31_RS06720at 128.683 kb on - strand, within EX31_RS06720at 128.683 kb on - strand, within EX31_RS06720at 128.816 kb on + strand, within EX31_RS06720at 128.833 kb on + strand, within EX31_RS06720at 128.969 kb on - strand, within EX31_RS06720at 129.003 kb on + strand, within EX31_RS06720at 129.098 kb on - strand, within EX31_RS06720at 129.120 kb on + strand, within EX31_RS06720at 129.121 kb on - strand, within EX31_RS06720at 129.121 kb on - strand, within EX31_RS06720at 129.122 kb on + strand, within EX31_RS06720at 129.122 kb on + strand, within EX31_RS06720at 129.123 kb on - strand, within EX31_RS06720at 129.123 kb on - strand, within EX31_RS06720at 129.248 kb on - strand, within EX31_RS06720at 129.271 kb on - strand, within EX31_RS06720at 129.311 kb on - strand, within EX31_RS06720at 129.311 kb on - strand, within EX31_RS06720at 129.474 kb on + strand, within EX31_RS06720at 129.621 kb on - strandat 129.661 kb on + strandat 129.661 kb on + strandat 129.661 kb on + strandat 129.662 kb on - strandat 129.662 kb on - strandat 129.759 kb on - strandat 129.769 kb on + strandat 129.820 kb on + strandat 129.876 kb on + strandat 129.919 kb on - strandat 129.919 kb on - strandat 129.941 kb on - strandat 130.108 kb on + strand, within EX31_RS06725at 130.108 kb on + strand, within EX31_RS06725at 130.109 kb on - strand, within EX31_RS06725at 130.109 kb on - strand, within EX31_RS06725at 130.109 kb on - strand, within EX31_RS06725at 130.109 kb on - strand, within EX31_RS06725at 130.109 kb on - strand, within EX31_RS06725at 130.109 kb on - strand, within EX31_RS06725at 130.109 kb on - strand, within EX31_RS06725at 130.113 kb on - strand, within EX31_RS06725at 130.113 kb on - strand, within EX31_RS06725at 130.113 kb on - strand, within EX31_RS06725at 130.113 kb on - strand, within EX31_RS06725at 130.148 kb on - strand, within EX31_RS06725at 130.211 kb on - strand, within EX31_RS06725at 130.229 kb on - strand, within EX31_RS06725at 130.229 kb on - strand, within EX31_RS06725at 130.583 kb on - strand, within EX31_RS06725at 130.598 kb on + strand, within EX31_RS06725at 130.709 kb on + strandat 130.709 kb on + strandat 130.710 kb on - strandat 130.710 kb on - strandat 130.710 kb on - strandat 130.710 kb on - strandat 130.710 kb on - strandat 130.710 kb on - strandat 130.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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127,564 - +0.8
127,642 + -0.1
127,645 - -0.6
127,726 - EX31_RS06715 0.12 +0.4
127,752 + EX31_RS06715 0.15 -0.5
127,752 + EX31_RS06715 0.15 -2.3
127,752 + EX31_RS06715 0.15 -2.5
127,753 - EX31_RS06715 0.15 -0.6
127,753 - EX31_RS06715 0.15 -1.5
127,753 - EX31_RS06715 0.15 -0.1
127,753 - EX31_RS06715 0.15 -2.1
127,822 + EX31_RS06715 0.24 -2.1
127,823 - EX31_RS06715 0.24 +0.3
127,824 + EX31_RS06715 0.24 +0.3
127,824 + EX31_RS06715 0.24 -1.8
127,835 - EX31_RS06715 0.25 -0.3
127,846 + EX31_RS06715 0.26 +1.3
127,846 + EX31_RS06715 0.26 -0.5
128,154 - EX31_RS06715 0.63 +1.0
128,154 - EX31_RS06715 0.63 -1.3
128,167 - EX31_RS06715 0.65 -1.4
128,188 + EX31_RS06715 0.67 -1.1
128,190 + EX31_RS06715 0.68 -0.1
128,191 - EX31_RS06715 0.68 +0.6
128,387 - -0.0
128,407 + -0.9
128,408 - +0.1
128,480 - +0.0
128,480 - +0.4
128,563 + -3.6
128,564 - -2.1
128,682 + EX31_RS06720 0.18 +0.1
128,682 + EX31_RS06720 0.18 -0.3
128,682 + EX31_RS06720 0.18 -1.6
128,683 - EX31_RS06720 0.18 -0.2
128,683 - EX31_RS06720 0.18 -0.7
128,816 + EX31_RS06720 0.28 -0.7
128,833 + EX31_RS06720 0.30 -1.5
128,969 - EX31_RS06720 0.40 +0.3
129,003 + EX31_RS06720 0.43 -0.8
129,098 - EX31_RS06720 0.51 -0.6
129,120 + EX31_RS06720 0.52 -0.6
129,121 - EX31_RS06720 0.52 -0.7
129,121 - EX31_RS06720 0.52 -0.8
129,122 + EX31_RS06720 0.53 -0.7
129,122 + EX31_RS06720 0.53 -0.6
129,123 - EX31_RS06720 0.53 +0.6
129,123 - EX31_RS06720 0.53 +0.1
129,248 - EX31_RS06720 0.63 +2.3
129,271 - EX31_RS06720 0.64 -0.2
129,311 - EX31_RS06720 0.68 -0.7
129,311 - EX31_RS06720 0.68 -1.4
129,474 + EX31_RS06720 0.80 -2.8
129,621 - +0.2
129,661 + -0.1
129,661 + +1.1
129,661 + -0.8
129,662 - +1.4
129,662 - +0.2
129,759 - +0.0
129,769 + -0.0
129,820 + +0.8
129,876 + -0.2
129,919 - -1.8
129,919 - -0.4
129,941 - -0.2
130,108 + EX31_RS06725 0.26 +0.0
130,108 + EX31_RS06725 0.26 -2.4
130,109 - EX31_RS06725 0.27 +0.2
130,109 - EX31_RS06725 0.27 -2.2
130,109 - EX31_RS06725 0.27 +1.6
130,109 - EX31_RS06725 0.27 -1.6
130,109 - EX31_RS06725 0.27 +0.7
130,109 - EX31_RS06725 0.27 -0.6
130,109 - EX31_RS06725 0.27 +0.4
130,113 - EX31_RS06725 0.27 -0.2
130,113 - EX31_RS06725 0.27 -1.2
130,113 - EX31_RS06725 0.27 +0.1
130,113 - EX31_RS06725 0.27 +0.5
130,148 - EX31_RS06725 0.31 -0.1
130,211 - EX31_RS06725 0.39 +0.1
130,229 - EX31_RS06725 0.41 -0.2
130,229 - EX31_RS06725 0.41 -1.4
130,583 - EX31_RS06725 0.84 -2.1
130,598 + EX31_RS06725 0.86 -0.6
130,709 + +2.0
130,709 + -2.6
130,710 - -0.1
130,710 - +0.6
130,710 - +0.3
130,710 - -0.4
130,710 - -0.6
130,710 - +0.4
130,717 - -0.7

Or see this region's nucleotide sequence