Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06560 and EX31_RS06565 are separated by 73 nucleotides EX31_RS06565 and EX31_RS06570 are separated by 119 nucleotides EX31_RS06570 and EX31_RS06575 are separated by 105 nucleotides
EX31_RS06560: EX31_RS06560 - NarK family nitrate/nitrite MFS transporter, at 87,936 to 89,354
_RS06560
EX31_RS06565: EX31_RS06565 - Ni(II)/Co(II)-binding transcriptional repressor RcnR, at 89,428 to 89,700
_RS06565
EX31_RS06570: EX31_RS06570 - nickel/cobalt efflux protein RcnA, at 89,820 to 90,695
_RS06570
EX31_RS06575: EX31_RS06575 - alpha/beta hydrolase, at 90,801 to 91,781
_RS06575
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.908 kb on + strand, within EX31_RS06560 at 88.908 kb on + strand, within EX31_RS06560 at 89.000 kb on + strand, within EX31_RS06560 at 89.001 kb on - strand, within EX31_RS06560 at 89.043 kb on + strand, within EX31_RS06560 at 89.271 kb on + strand at 89.271 kb on + strand at 89.304 kb on + strand at 89.304 kb on + strand at 89.317 kb on + strand at 89.317 kb on + strand at 89.318 kb on - strand at 89.439 kb on - strand at 89.508 kb on + strand, within EX31_RS06565 at 89.508 kb on + strand, within EX31_RS06565 at 89.508 kb on + strand, within EX31_RS06565 at 89.508 kb on + strand, within EX31_RS06565 at 89.509 kb on - strand, within EX31_RS06565 at 89.623 kb on - strand, within EX31_RS06565 at 89.623 kb on - strand, within EX31_RS06565 at 89.737 kb on + strand at 89.764 kb on - strand at 89.798 kb on + strand at 89.798 kb on + strand at 89.816 kb on + strand at 89.843 kb on - strand at 89.843 kb on - strand at 89.881 kb on + strand at 89.976 kb on - strand, within EX31_RS06570 at 89.980 kb on + strand, within EX31_RS06570 at 90.008 kb on + strand, within EX31_RS06570 at 90.045 kb on + strand, within EX31_RS06570 at 90.045 kb on + strand, within EX31_RS06570 at 90.045 kb on + strand, within EX31_RS06570 at 90.045 kb on + strand, within EX31_RS06570 at 90.045 kb on + strand, within EX31_RS06570 at 90.045 kb on + strand, within EX31_RS06570 at 90.046 kb on - strand, within EX31_RS06570 at 90.046 kb on - strand, within EX31_RS06570 at 90.046 kb on - strand, within EX31_RS06570 at 90.269 kb on + strand, within EX31_RS06570 at 90.270 kb on - strand, within EX31_RS06570 at 90.270 kb on - strand, within EX31_RS06570 at 90.270 kb on - strand, within EX31_RS06570 at 90.270 kb on - strand, within EX31_RS06570 at 90.471 kb on - strand, within EX31_RS06570 at 90.499 kb on + strand, within EX31_RS06570 at 90.499 kb on + strand, within EX31_RS06570 at 90.535 kb on + strand, within EX31_RS06570 at 90.657 kb on + strand at 90.657 kb on + strand at 90.657 kb on + strand at 90.657 kb on + strand at 90.657 kb on + strand at 90.658 kb on - strand at 90.658 kb on - strand at 90.763 kb on + strand at 90.786 kb on + strand at 90.786 kb on + strand at 90.786 kb on + strand at 91.074 kb on + strand, within EX31_RS06575 at 91.074 kb on + strand, within EX31_RS06575 at 91.147 kb on + strand, within EX31_RS06575 at 91.147 kb on + strand, within EX31_RS06575 at 91.368 kb on + strand, within EX31_RS06575 at 91.471 kb on - strand, within EX31_RS06575 at 91.510 kb on - strand, within EX31_RS06575
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 88,908 + EX31_RS06560 0.68 -0.4 88,908 + EX31_RS06560 0.68 -0.7 89,000 + EX31_RS06560 0.75 +0.4 89,001 - EX31_RS06560 0.75 +0.0 89,043 + EX31_RS06560 0.78 -0.5 89,271 + +0.2 89,271 + -2.4 89,304 + +0.8 89,304 + -1.6 89,317 + -0.6 89,317 + -1.1 89,318 - +1.4 89,439 - +0.1 89,508 + EX31_RS06565 0.29 -2.5 89,508 + EX31_RS06565 0.29 -0.1 89,508 + EX31_RS06565 0.29 -0.2 89,508 + EX31_RS06565 0.29 +0.1 89,509 - EX31_RS06565 0.30 -0.3 89,623 - EX31_RS06565 0.71 +0.6 89,623 - EX31_RS06565 0.71 +0.8 89,737 + +0.5 89,764 - -2.1 89,798 + -0.1 89,798 + -1.4 89,816 + -2.6 89,843 - +1.4 89,843 - -0.7 89,881 + +0.5 89,976 - EX31_RS06570 0.18 +0.1 89,980 + EX31_RS06570 0.18 -0.3 90,008 + EX31_RS06570 0.21 +0.1 90,045 + EX31_RS06570 0.26 -1.2 90,045 + EX31_RS06570 0.26 +0.4 90,045 + EX31_RS06570 0.26 -0.1 90,045 + EX31_RS06570 0.26 -2.2 90,045 + EX31_RS06570 0.26 -2.2 90,045 + EX31_RS06570 0.26 -0.5 90,046 - EX31_RS06570 0.26 +2.4 90,046 - EX31_RS06570 0.26 -0.2 90,046 - EX31_RS06570 0.26 -1.0 90,269 + EX31_RS06570 0.51 -0.8 90,270 - EX31_RS06570 0.51 -0.3 90,270 - EX31_RS06570 0.51 -0.5 90,270 - EX31_RS06570 0.51 +0.0 90,270 - EX31_RS06570 0.51 +0.2 90,471 - EX31_RS06570 0.74 -3.7 90,499 + EX31_RS06570 0.78 +0.0 90,499 + EX31_RS06570 0.78 -1.0 90,535 + EX31_RS06570 0.82 +0.1 90,657 + +0.2 90,657 + +0.5 90,657 + +0.4 90,657 + +0.8 90,657 + +0.1 90,658 - +0.4 90,658 - -1.5 90,763 + +0.6 90,786 + +0.2 90,786 + -0.4 90,786 + +0.2 91,074 + EX31_RS06575 0.28 +0.2 91,074 + EX31_RS06575 0.28 -1.1 91,147 + EX31_RS06575 0.35 +0.2 91,147 + EX31_RS06575 0.35 -0.1 91,368 + EX31_RS06575 0.58 +0.1 91,471 - EX31_RS06575 0.68 +0.7 91,510 - EX31_RS06575 0.72 -2.9
Or see this region's nucleotide sequence